URI: linkml:Any
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| + | + | + | + |
| used by | +used in | +type | +used | +
|---|---|---|---|
| InformationEntity | +describes | +range | +Any | +
| MathematicalOperation | +inputs | +range | +Any | +
| MathematicalOperation | +outputs | +range | +Any | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml:Any | +
| native | +linkml_common:Any | +
name: Any
+from_schema: https://w3id.org/linkml/linkml-common
+class_uri: linkml:Any
+
+name: Any
+from_schema: https://w3id.org/linkml/linkml-common
+class_uri: linkml:Any
+
+URI: linkml_common:BasicFoodType
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:BasicFoodType | +
| native | +linkml_common:BasicFoodType | +
name: BasicFoodType
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: FoodTypeConcept
+
+name: BasicFoodType
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: FoodTypeConcept
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: BasicFoodType
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: BasicFoodType
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: BasicFoodType
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: BasicFoodType
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: BasicFoodType
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: BasicFoodType
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A binary (true or false) value
+URI: xsd:boolean
+ +URI: linkml_common:ClinicalCohort
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| definition | +0..1 ClinicalCohortDefinition |
++ | direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| ClinicalCohortEnrollment | +cohort | +range | +ClinicalCohort | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:ClinicalCohort | +
| native | +linkml_common:ClinicalCohort | +
name: ClinicalCohort
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ definition:
+ name: definition
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ rank: 1000
+ range: ClinicalCohortDefinition
+
+name: ClinicalCohort
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ definition:
+ name: definition
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ rank: 1000
+ alias: definition
+ owner: ClinicalCohort
+ domain_of:
+ - ClinicalCohort
+ range: ClinicalCohortDefinition
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: ClinicalCohort
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: ClinicalCohort
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: ClinicalCohort
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: ClinicalCohort
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: ClinicalCohort
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: ClinicalCohort
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:ClinicalCohortDefinition
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| ClinicalCohort | +definition | +range | +ClinicalCohortDefinition | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:ClinicalCohortDefinition | +
| native | +linkml_common:ClinicalCohortDefinition | +
| exact | +omopschema:COHORT_DEFINITION | +
name: ClinicalCohortDefinition
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:COHORT_DEFINITION
+is_a: NamedThing
+
+name: ClinicalCohortDefinition
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:COHORT_DEFINITION
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: ClinicalCohortDefinition
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:ClinicalCohortEnrollment
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| patient | +0..1 Patient |
++ | direct | +
| cohort | +0..1 ClinicalCohort |
++ | direct | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:ClinicalCohortEnrollment | +
| native | +linkml_common:ClinicalCohortEnrollment | +
| exact | +omopschema:COHORT | +
name: ClinicalCohortEnrollment
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:COHORT
+is_a: Event
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ range: Patient
+ cohort:
+ name: cohort
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ rank: 1000
+ range: ClinicalCohort
+
+name: ClinicalCohortEnrollment
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:COHORT
+is_a: Event
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ alias: patient
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - HealthcareEncounter
+ - HealthcareConditionOccurrence
+ - ClinicalCohortEnrollment
+ range: Patient
+ cohort:
+ name: cohort
+ from_schema: https://w3id.org/linkml-common/clinicalresearch
+ rank: 1000
+ alias: cohort
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - ClinicalCohortEnrollment
+ range: ClinicalCohort
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: ClinicalCohortEnrollment
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A group of things. The collection may be heterogeneous or homogeneous.
+ +| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| members | +0..* Entity |
+The members of the collection | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Collection | +
| native | +linkml_common:Collection | +
name: Collection
+description: A group of things. The collection may be heterogeneous or homogeneous.
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ members:
+ name: members
+ description: The members of the collection
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ range: Entity
+ inlined: true
+ inlined_as_list: true
+
+name: Collection
+description: A group of things. The collection may be heterogeneous or homogeneous.
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ members:
+ name: members
+ description: The members of the collection
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: members
+ owner: Collection
+ domain_of:
+ - Collection
+ range: Entity
+ inlined: true
+ inlined_as_list: true
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Collection
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+URI: linkml_common:CompositeFoodType
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:CompositeFoodType | +
| native | +linkml_common:CompositeFoodType | +
name: CompositeFoodType
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: FoodTypeConcept
+
+name: CompositeFoodType
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: FoodTypeConcept
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: CompositeFoodType
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: CompositeFoodType
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: CompositeFoodType
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: CompositeFoodType
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: CompositeFoodType
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: CompositeFoodType
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Concept | +
| native | +linkml_common:Concept | +
| exact | +biolink:OntologyClass, fhir:CodableConcept | +
name: Concept
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- biolink:OntologyClass
+- fhir:CodableConcept
+is_a: NamedThing
+
+name: Concept
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- biolink:OntologyClass
+- fhir:CodableConcept
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Concept
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Concept
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Concept
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Concept
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Concept
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Concept
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+a compact URI
+URI: xsd:string
+ +A currency
+URI: linkml_common:CurrencyConcept
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| MoneyQuantity | +unit | +range | +CurrencyConcept | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:CurrencyConcept | +
| native | +linkml_common:CurrencyConcept | +
name: CurrencyConcept
+description: A currency
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+
+name: CurrencyConcept
+description: A currency
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: CurrencyConcept
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: CurrencyConcept
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: CurrencyConcept
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: CurrencyConcept
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: CurrencyConcept
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: CurrencyConcept
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:DataGenerationFromSample
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 InvestigativeProtocol |
++ | PlannedProcess, InvestigativeProcess | +
| part_of | +0..1 Investigation |
++ | InvestigativeProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:DataGenerationFromSample | +
| native | +linkml_common:DataGenerationFromSample | +
name: DataGenerationFromSample
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: InvestigativeProcess
+
+name: DataGenerationFromSample
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: InvestigativeProcess
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: follows_procedure
+ owner: DataGenerationFromSample
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: InvestigativeProtocol
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: part_of
+ owner: DataGenerationFromSample
+ domain_of:
+ - InvestigativeProcess
+ - EngineeringProcess
+ range: Investigation
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: DataGenerationFromSample
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: DataGenerationFromSample
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: DataGenerationFromSample
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: DataGenerationFromSample
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: DataGenerationFromSample
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: DataGenerationFromSample
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: DataGenerationFromSample
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: DataGenerationFromSample
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: DataGenerationFromSample
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:DataStructure
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:DataStructure | +
| native | +linkml_common:DataStructure | +
name: DataStructure
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+
+name: DataStructure
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: DataStructure
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+Either a date or a datetime
+ + +The combination of a date and time
+URI: xsd:dateTime
+ +A real number with arbitrary precision that conforms to the xsd:decimal specification
+URI: xsd:decimal
+ +A real number that conforms to the xsd:double specification
+URI: xsd:double
+ +URI: linkml_common:EngineeringMaterialProcessing
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | PlannedProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:EngineeringMaterialProcessing | +
| native | +linkml_common:EngineeringMaterialProcessing | +
name: EngineeringMaterialProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+
+name: EngineeringMaterialProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: EngineeringMaterialProcessing
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:EngineeringProcess
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 EngineeringSpecification |
++ | direct | +
| part_of | +0..1 EngineeringProcess |
++ | direct | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| EngineeringProcess | +part_of | +range | +EngineeringProcess | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:EngineeringProcess | +
| native | +linkml_common:EngineeringProcess | +
name: EngineeringProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/engineering
+ range: EngineeringSpecification
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/engineering
+ range: EngineeringProcess
+
+name: EngineeringProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/engineering
+ alias: follows_procedure
+ owner: EngineeringProcess
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: EngineeringSpecification
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/engineering
+ alias: part_of
+ owner: EngineeringProcess
+ domain_of:
+ - InvestigativeProcess
+ - EngineeringProcess
+ range: EngineeringProcess
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: EngineeringProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: EngineeringProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: EngineeringProcess
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: EngineeringProcess
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: EngineeringProcess
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: EngineeringProcess
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: EngineeringProcess
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: EngineeringProcess
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:EngineeringSpecification
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| EngineeringProcess | +follows_procedure | +range | +EngineeringSpecification | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:EngineeringSpecification | +
| native | +linkml_common:EngineeringSpecification | +
name: EngineeringSpecification
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+
+name: EngineeringSpecification
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: EngineeringSpecification
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: EngineeringSpecification
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: EngineeringSpecification
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: EngineeringSpecification
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: EngineeringSpecification
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: EngineeringSpecification
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A physical, digital, conceptual, or other kind of thing with some common characteristics
+URI: schema:Thing
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +direct | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| Collection | +members | +range | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +schema:Thing | +
| native | +linkml_common:Entity | +
name: Entity
+description: A physical, digital, conceptual, or other kind of thing with some common
+ characteristics
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+slots:
+- type
+class_uri: schema:Thing
+
+name: Entity
+description: A physical, digital, conceptual, or other kind of thing with some common
+ characteristics
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Entity
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: schema:Thing
+
+URI: linkml_common:EnvironmentalProcess
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| + | + | + | + |
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:EnvironmentalProcess | +
| native | +linkml_common:EnvironmentalProcess | +
name: EnvironmentalProcess
+comments:
+- TODO
+from_schema: https://w3id.org/linkml/linkml-common
+
+name: EnvironmentalProcess
+comments:
+- TODO
+from_schema: https://w3id.org/linkml/linkml-common
+
+A thing that happens
+URI: linkml_common:Event
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| starts_at | +0..1 TimePoint |
++ | direct | +
| ends_at | +0..1 TimePoint |
++ | direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| TimePoint | +marker_event | +range | +Event | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Event | +
| native | +linkml_common:Event | +
name: Event
+description: A thing that happens
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+slots:
+- starts_at
+- ends_at
+
+name: Event
+description: A thing that happens
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: Event
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: Event
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Event
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Event
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Event
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Event
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Event
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Event
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:FoodIngredient
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +Entity | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| FoodRecipe | +ingredients | +range | +FoodIngredient | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:FoodIngredient | +
| native | +linkml_common:FoodIngredient | +
name: FoodIngredient
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+
+name: FoodIngredient
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: FoodIngredient
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+URI: linkml_common:FoodProcessing
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | PlannedProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| FoodRecipe | +steps | +range | +FoodProcessing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:FoodProcessing | +
| native | +linkml_common:FoodProcessing | +
name: FoodProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+
+name: FoodProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: FoodProcessing
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: FoodProcessing
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: FoodProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: FoodProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: FoodProcessing
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: FoodProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: FoodProcessing
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: FoodProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: FoodProcessing
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: FoodProcessing
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| ingredients | +0..* FoodIngredient |
++ | direct | +
| steps | +0..* FoodProcessing |
++ | direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:FoodRecipe | +
| native | +linkml_common:FoodRecipe | +
name: FoodRecipe
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+attributes:
+ ingredients:
+ name: ingredients
+ from_schema: https://w3id.org/linkml-common/foods
+ rank: 1000
+ multivalued: true
+ range: FoodIngredient
+ steps:
+ name: steps
+ from_schema: https://w3id.org/linkml-common/foods
+ rank: 1000
+ multivalued: true
+ range: FoodProcessing
+
+name: FoodRecipe
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+attributes:
+ ingredients:
+ name: ingredients
+ from_schema: https://w3id.org/linkml-common/foods
+ rank: 1000
+ multivalued: true
+ alias: ingredients
+ owner: FoodRecipe
+ domain_of:
+ - FoodRecipe
+ range: FoodIngredient
+ steps:
+ name: steps
+ from_schema: https://w3id.org/linkml-common/foods
+ rank: 1000
+ multivalued: true
+ alias: steps
+ owner: FoodRecipe
+ domain_of:
+ - FoodRecipe
+ range: FoodProcessing
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: FoodRecipe
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: FoodRecipe
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: FoodRecipe
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: FoodRecipe
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: FoodRecipe
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: FoodRecipe
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:FoodTypeConcept
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:FoodTypeConcept | +
| native | +linkml_common:FoodTypeConcept | +
name: FoodTypeConcept
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+
+name: FoodTypeConcept
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: FoodTypeConcept
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: FoodTypeConcept
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: FoodTypeConcept
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: FoodTypeConcept
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: FoodTypeConcept
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: FoodTypeConcept
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:GeoPointLocation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| latitude | +0..1 Decimal |
+The latitude of the location | +direct | +
| longitude | +0..1 Decimal |
+The longitude of the location | +direct | +
| altitude | +0..1 Decimal |
+The altitude of the location | +direct | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareSite | +geolocation | +range | +GeoPointLocation | +
| Place | +geolocation | +range | +GeoPointLocation | +
| Landform | +geolocation | +range | +GeoPointLocation | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:GeoPointLocation | +
| native | +linkml_common:GeoPointLocation | +
name: GeoPointLocation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PointLocation
+attributes:
+ latitude:
+ name: latitude
+ description: The latitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ range: decimal
+ longitude:
+ name: longitude
+ description: The longitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ range: decimal
+ altitude:
+ name: altitude
+ description: The altitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ range: decimal
+ unit:
+ ucum_code: m
+
+name: GeoPointLocation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PointLocation
+attributes:
+ latitude:
+ name: latitude
+ description: The latitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: latitude
+ owner: GeoPointLocation
+ domain_of:
+ - GeoPointLocation
+ range: decimal
+ longitude:
+ name: longitude
+ description: The longitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: longitude
+ owner: GeoPointLocation
+ domain_of:
+ - GeoPointLocation
+ range: decimal
+ altitude:
+ name: altitude
+ description: The altitude of the location
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: altitude
+ owner: GeoPointLocation
+ domain_of:
+ - GeoPointLocation
+ range: decimal
+ unit:
+ ucum_code: m
+
+URI: linkml_common:HealthcareConditionOccurrence
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| patient | +0..1 Patient |
++ | direct | +
| observed_during | +0..1 HealthcareEncounter |
++ | direct | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareConditionOccurrence | +
| native | +linkml_common:HealthcareConditionOccurrence | +
| exact | +omopschema:CONDITION_OCCURRENCE | +
name: HealthcareConditionOccurrence
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CONDITION_OCCURRENCE
+is_a: Event
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/healthcare
+ range: Patient
+ observed_during:
+ name: observed_during
+ from_schema: https://w3id.org/linkml-common/healthcare
+ exact_mappings:
+ - omopschema:vist_occurrence_id
+ rank: 1000
+ range: HealthcareEncounter
+
+name: HealthcareConditionOccurrence
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CONDITION_OCCURRENCE
+is_a: Event
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/healthcare
+ alias: patient
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - HealthcareEncounter
+ - HealthcareConditionOccurrence
+ - ClinicalCohortEnrollment
+ range: Patient
+ observed_during:
+ name: observed_during
+ from_schema: https://w3id.org/linkml-common/healthcare
+ exact_mappings:
+ - omopschema:vist_occurrence_id
+ rank: 1000
+ alias: observed_during
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - HealthcareConditionOccurrence
+ range: HealthcareEncounter
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: HealthcareConditionOccurrence
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:HealthcareEncounter
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| patient | +0..1 Patient |
++ | direct | +
| provider | +0..1 HealthcareProvider |
++ | direct | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 HealthcareEncounterClassification |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareConditionOccurrence | +observed_during | +range | +HealthcareEncounter | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareEncounter | +
| native | +linkml_common:HealthcareEncounter | +
| exact | +omopschema:VISIT_OCCURRENCE | +
name: HealthcareEncounter
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:VISIT_OCCURRENCE
+is_a: Event
+slot_usage:
+ subtype:
+ name: subtype
+ domain_of:
+ - NamedThing
+ range: HealthcareEncounterClassification
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ range: Patient
+ provider:
+ name: provider
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ range: HealthcareProvider
+
+name: HealthcareEncounter
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:VISIT_OCCURRENCE
+is_a: Event
+slot_usage:
+ subtype:
+ name: subtype
+ domain_of:
+ - NamedThing
+ range: HealthcareEncounterClassification
+attributes:
+ patient:
+ name: patient
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: patient
+ owner: HealthcareEncounter
+ domain_of:
+ - HealthcareEncounter
+ - HealthcareConditionOccurrence
+ - ClinicalCohortEnrollment
+ range: Patient
+ provider:
+ name: provider
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: provider
+ owner: HealthcareEncounter
+ domain_of:
+ - HealthcareEncounter
+ range: HealthcareProvider
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: HealthcareEncounter
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: HealthcareEncounter
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: HealthcareEncounter
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: HealthcareEncounter
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: HealthcareEncounter
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: HealthcareEncounter
+ domain_of:
+ - NamedThing
+ range: HealthcareEncounterClassification
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: HealthcareEncounter
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: HealthcareEncounter
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: HealthcareEncounterClassification
+| Value | +Meaning | +Description | +
|---|---|---|
| Inpatient Visit | +None | +Person visiting hospital, at a Care Site, in bed, for duration of more than o... | +
| Emergency Room Visit | +None | +Person visiting dedicated healthcare institution for treating emergencies, at... | +
| Emergency Room and Inpatient Visit | +None | +Person visiting ER followed by a subsequent Inpatient Visit, where Emergency ... | +
| Non-hospital institution Visit | +None | +Person visiting dedicated institution for reasons of poor health, at a Care S... | +
| Outpatient Visit | +None | +Person visiting dedicated ambulatory healthcare institution, at a Care Site, ... | +
| Home Visit | +None | +Provider visiting Person, without a Care Site, within one day, delivering ser... | +
| Telehealth Visit | +None | +Patient engages with Provider through communication media | +
| Pharmacy Visit | +None | +Person visiting pharmacy for dispensing of Drug, at a Care Site, within one d... | +
| Laboratory Visit | +None | +Patient visiting dedicated institution, at a Care Site, within one day, for t... | +
| Ambulance Visit | +None | +Person using transportation service for the purpose of initiating one of the ... | +
| Case Management Visit | +None | +Person interacting with healthcare system, without a Care Site, within a day,... | +
| Name | +Description | +
|---|---|
| subtype | ++ |
name: HealthcareEncounterClassification
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+permissible_values:
+ Inpatient Visit:
+ text: Inpatient Visit
+ description: Person visiting hospital, at a Care Site, in bed, for duration of
+ more than one day, with physicians and other Providers permanently available
+ to deliver service around the clock
+ Emergency Room Visit:
+ text: Emergency Room Visit
+ description: Person visiting dedicated healthcare institution for treating emergencies,
+ at a Care Site, within one day, with physicians and Providers permanently available
+ to deliver service around the clock
+ Emergency Room and Inpatient Visit:
+ text: Emergency Room and Inpatient Visit
+ description: Person visiting ER followed by a subsequent Inpatient Visit, where
+ Emergency department is part of hospital, and transition from the ER to other
+ hospital departments is undefined
+ Non-hospital institution Visit:
+ text: Non-hospital institution Visit
+ description: Person visiting dedicated institution for reasons of poor health,
+ at a Care Site, long-term or permanently, with no physician but possibly other
+ Providers permanently available to deliver service around the clock
+ Outpatient Visit:
+ text: Outpatient Visit
+ description: Person visiting dedicated ambulatory healthcare institution, at a
+ Care Site, within one day, without bed, with physicians or medical Providers
+ delivering service during Visit
+ Home Visit:
+ text: Home Visit
+ description: Provider visiting Person, without a Care Site, within one day, delivering
+ service
+ Telehealth Visit:
+ text: Telehealth Visit
+ description: Patient engages with Provider through communication media
+ Pharmacy Visit:
+ text: Pharmacy Visit
+ description: Person visiting pharmacy for dispensing of Drug, at a Care Site,
+ within one day
+ Laboratory Visit:
+ text: Laboratory Visit
+ description: Patient visiting dedicated institution, at a Care Site, within one
+ day, for the purpose of a Measurement.
+ Ambulance Visit:
+ text: Ambulance Visit
+ description: Person using transportation service for the purpose of initiating
+ one of the other Visits, without a Care Site, within one day, potentially with
+ Providers accompanying the Visit and delivering service
+ Case Management Visit:
+ text: Case Management Visit
+ description: Person interacting with healthcare system, without a Care Site, within
+ a day, with no Providers involved, for administrative purposes
+
+URI: linkml_common:HealthcareOrganization
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareOrganization | +
| native | +linkml_common:HealthcareOrganization | +
name: HealthcareOrganization
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Organization
+
+name: HealthcareOrganization
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Organization
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: HealthcareOrganization
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: HealthcareOrganization
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: HealthcareOrganization
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: HealthcareOrganization
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: HealthcareOrganization
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: HealthcareOrganization
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:HealthcareProvider
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| speciality | +0..1 Concept |
++ | direct | +
| care_site | +0..1 HealthcareSite |
++ | direct | +
| is_person | +0..1 Person |
++ | HealthcareRole | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareEncounter | +provider | +range | +HealthcareProvider | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareProvider | +
| native | +linkml_common:HealthcareProvider | +
name: HealthcareProvider
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: HealthcareRole
+attributes:
+ speciality:
+ name: speciality
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ range: Concept
+ care_site:
+ name: care_site
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ range: HealthcareSite
+
+name: HealthcareProvider
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: HealthcareRole
+attributes:
+ speciality:
+ name: speciality
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: speciality
+ owner: HealthcareProvider
+ domain_of:
+ - HealthcareProvider
+ range: Concept
+ care_site:
+ name: care_site
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: care_site
+ owner: HealthcareProvider
+ domain_of:
+ - HealthcareProvider
+ range: HealthcareSite
+ is_person:
+ name: is_person
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: is_person
+ owner: HealthcareProvider
+ domain_of:
+ - HealthcareRole
+ range: Person
+
+URI: linkml_common:HealthcareRole
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| is_person | +0..1 Person |
++ | direct | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareRole | +
| native | +linkml_common:HealthcareRole | +
name: HealthcareRole
+from_schema: https://w3id.org/linkml/linkml-common
+attributes:
+ is_person:
+ name: is_person
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ range: Person
+
+name: HealthcareRole
+from_schema: https://w3id.org/linkml/linkml-common
+attributes:
+ is_person:
+ name: is_person
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: is_person
+ owner: HealthcareRole
+ domain_of:
+ - HealthcareRole
+ range: Person
+
+URI: linkml_common:HealthcareSite
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| address | +0..1 PostalAddress |
++ | Place | +
| geolocation | +0..1 GeoPointLocation |
+The geolocation of the place | +Place | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareProvider | +care_site | +range | +HealthcareSite | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:HealthcareSite | +
| native | +linkml_common:HealthcareSite | +
| exact | +omopschema:CARE_SITE | +
name: HealthcareSite
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CARE_SITE
+is_a: Place
+
+name: HealthcareSite
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CARE_SITE
+is_a: Place
+attributes:
+ address:
+ name: address
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: address
+ owner: HealthcareSite
+ domain_of:
+ - Place
+ range: PostalAddress
+ geolocation:
+ name: geolocation
+ description: The geolocation of the place
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: geolocation
+ owner: HealthcareSite
+ domain_of:
+ - Place
+ range: GeoPointLocation
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: HealthcareSite
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: HealthcareSite
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: HealthcareSite
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: HealthcareSite
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: HealthcareSite
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: HealthcareSite
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+An entity that describes some information
+URI: linkml_common:InformationEntity
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| describes | +0..1 Any |
+The thing that is being described | +direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:InformationEntity | +
| native | +linkml_common:InformationEntity | +
name: InformationEntity
+description: An entity that describes some information
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+slots:
+- describes
+
+name: InformationEntity
+description: An entity that describes some information
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ describes:
+ name: describes
+ description: The thing that is being described
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:describes
+ alias: describes
+ owner: InformationEntity
+ domain_of:
+ - InformationEntity
+ range: Any
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: InformationEntity
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: InformationEntity
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: InformationEntity
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: InformationEntity
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: InformationEntity
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: InformationEntity
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+An entity that is not a physical object, process, or information
+URI: schema:Intangible
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +schema:Intangible | +
| native | +linkml_common:Intangible | +
name: Intangible
+description: An entity that is not a physical object, process, or information
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+class_uri: schema:Intangible
+
+name: Intangible
+description: An entity that is not a physical object, process, or information
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Intangible
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: schema:Intangible
+
+An integer
+URI: xsd:integer
+ +URI: linkml_common:Investigation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| objectives | +0..1 String |
++ | direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| InvestigativeProcess | +part_of | +range | +Investigation | +
| SampleCollectionProcess | +part_of | +range | +Investigation | +
| DataGenerationFromSample | +part_of | +range | +Investigation | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Investigation | +
| native | +linkml_common:Investigation | +
name: Investigation
+implements:
+- patterns:Composable
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ objectives:
+ name: objectives
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ range: string
+
+name: Investigation
+implements:
+- patterns:Composable
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ objectives:
+ name: objectives
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: objectives
+ owner: Investigation
+ domain_of:
+ - Investigation
+ range: string
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Investigation
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Investigation
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Investigation
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Investigation
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Investigation
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Investigation
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:InvestigativeProcess
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 InvestigativeProtocol |
++ | direct | +
| part_of | +0..1 Investigation |
++ | direct | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:InvestigativeProcess | +
| native | +linkml_common:InvestigativeProcess | +
name: InvestigativeProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ range: InvestigativeProtocol
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ range: Investigation
+
+name: InvestigativeProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: follows_procedure
+ owner: InvestigativeProcess
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: InvestigativeProtocol
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: part_of
+ owner: InvestigativeProcess
+ domain_of:
+ - InvestigativeProcess
+ - EngineeringProcess
+ range: Investigation
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: InvestigativeProcess
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: InvestigativeProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: InvestigativeProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: InvestigativeProcess
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: InvestigativeProcess
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: InvestigativeProcess
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: InvestigativeProcess
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: InvestigativeProcess
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: InvestigativeProcess
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:InvestigativeProtocol
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| InvestigativeProcess | +follows_procedure | +range | +InvestigativeProtocol | +
| SampleCollectionProcess | +follows_procedure | +range | +InvestigativeProtocol | +
| DataGenerationFromSample | +follows_procedure | +range | +InvestigativeProtocol | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:InvestigativeProtocol | +
| native | +linkml_common:InvestigativeProtocol | +
name: InvestigativeProtocol
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+
+name: InvestigativeProtocol
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Procedure
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: InvestigativeProtocol
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: InvestigativeProtocol
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: InvestigativeProtocol
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: InvestigativeProtocol
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: InvestigativeProtocol
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: InvestigativeProtocol
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form.
+URI: xsd:string
+ +A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form.
+URI: xsd:string
+ +A natural feature of the solid surface of the Earth or other planetary body
+ +| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| address | +0..1 PostalAddress |
++ | Place | +
| geolocation | +1..1 GeoPointLocation |
+The geolocation of the place | +Place | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Landform | +
| native | +linkml_common:Landform | +
| exact | +ENVO:00000083, fhir:Location | +
name: Landform
+description: A natural feature of the solid surface of the Earth or other planetary
+ body
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- ENVO:00000083
+- fhir:Location
+is_a: Place
+slot_usage:
+ geolocation:
+ name: geolocation
+ domain_of:
+ - Place
+ required: true
+
+name: Landform
+description: A natural feature of the solid surface of the Earth or other planetary
+ body
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- ENVO:00000083
+- fhir:Location
+is_a: Place
+slot_usage:
+ geolocation:
+ name: geolocation
+ domain_of:
+ - Place
+ required: true
+attributes:
+ address:
+ name: address
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: address
+ owner: Landform
+ domain_of:
+ - Place
+ range: PostalAddress
+ geolocation:
+ name: geolocation
+ description: The geolocation of the place
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: geolocation
+ owner: Landform
+ domain_of:
+ - Place
+ range: GeoPointLocation
+ required: true
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Landform
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Landform
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Landform
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Landform
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Landform
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Landform
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:LifeEvent | +
| native | +linkml_common:LifeEvent | +
name: LifeEvent
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+
+name: LifeEvent
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+attributes:
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: LifeEvent
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: LifeEvent
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: LifeEvent
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: LifeEvent
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: LifeEvent
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: LifeEvent
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: LifeEvent
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: LifeEvent
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| + | + | + | + |
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Location | +
| native | +linkml_common:Location | +
name: Location
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+
+name: Location
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+
+URI: linkml_common:MaterialCollection
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | PlannedProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:MaterialCollection | +
| native | +linkml_common:MaterialCollection | +
name: MaterialCollection
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+
+name: MaterialCollection
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: MaterialCollection
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: MaterialCollection
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: MaterialCollection
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: MaterialCollection
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: MaterialCollection
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: MaterialCollection
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: MaterialCollection
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: MaterialCollection
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: MaterialCollection
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: MaterialCollection
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:MaterialProcessing
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | PlannedProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:MaterialProcessing | +
| native | +linkml_common:MaterialProcessing | +
name: MaterialProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+
+name: MaterialProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: PlannedProcess
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: MaterialProcessing
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: MaterialProcessing
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: MaterialProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: MaterialProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: MaterialProcessing
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: MaterialProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: MaterialProcessing
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: MaterialProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: MaterialProcessing
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: MaterialProcessing
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+Application of a mathematical operation to one or more inputs to produce one or more outputs
+URI: linkml_common:MathematicalOperation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| inputs | +0..* Any |
+The inputs to the operation | +direct | +
| outputs | +0..* Any |
+The outputs of the operation | +direct | +
| parts | +0..* MathematicalOperation |
+The parts of the process | +direct | +
| immediate_preceding_steps | +0..* MathematicalOperation |
+The steps that immediately precede this step | +direct | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| UnitConversionOperation | +parts | +range | +MathematicalOperation | +
| UnitConversionOperation | +immediate_preceding_steps | +range | +MathematicalOperation | +
| MathematicalOperation | +parts | +range | +MathematicalOperation | +
| MathematicalOperation | +immediate_preceding_steps | +range | +MathematicalOperation | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:MathematicalOperation | +
| native | +linkml_common:MathematicalOperation | +
name: MathematicalOperation
+description: Application of a mathematical operation to one or more inputs to produce
+ one or more outputs
+from_schema: https://w3id.org/linkml/linkml-common
+attributes:
+ inputs:
+ name: inputs
+ description: The inputs to the operation
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ range: Any
+ outputs:
+ name: outputs
+ description: The outputs of the operation
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ range: Any
+ parts:
+ name: parts
+ description: The parts of the process
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ range: MathematicalOperation
+ immediate_preceding_steps:
+ name: immediate_preceding_steps
+ description: The steps that immediately precede this step
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ range: MathematicalOperation
+
+name: MathematicalOperation
+description: Application of a mathematical operation to one or more inputs to produce
+ one or more outputs
+from_schema: https://w3id.org/linkml/linkml-common
+attributes:
+ inputs:
+ name: inputs
+ description: The inputs to the operation
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: inputs
+ owner: MathematicalOperation
+ domain_of:
+ - MathematicalOperation
+ range: Any
+ outputs:
+ name: outputs
+ description: The outputs of the operation
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: outputs
+ owner: MathematicalOperation
+ domain_of:
+ - MathematicalOperation
+ range: Any
+ parts:
+ name: parts
+ description: The parts of the process
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: parts
+ owner: MathematicalOperation
+ domain_of:
+ - MathematicalOperation
+ range: MathematicalOperation
+ immediate_preceding_steps:
+ name: immediate_preceding_steps
+ description: The steps that immediately precede this step
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: immediate_preceding_steps
+ owner: MathematicalOperation
+ domain_of:
+ - MathematicalOperation
+ range: MathematicalOperation
+
+URI: linkml_common:Measurement
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| quantity_measured | +0..1 Quantity |
+The quantity being measured | +direct | +
| variable_measured | +0..1 Variable |
+The variable being measured | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Measurement | +
| native | +linkml_common:Measurement | +
name: Measurement
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Observation
+attributes:
+ quantity_measured:
+ name: quantity_measured
+ description: The quantity being measured
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ range: Quantity
+ variable_measured:
+ name: variable_measured
+ description: The variable being measured
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ range: Variable
+
+name: Measurement
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Observation
+attributes:
+ quantity_measured:
+ name: quantity_measured
+ description: The quantity being measured
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ alias: quantity_measured
+ owner: Measurement
+ domain_of:
+ - Measurement
+ range: Quantity
+ variable_measured:
+ name: variable_measured
+ description: The variable being measured
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ alias: variable_measured
+ owner: Measurement
+ domain_of:
+ - Measurement
+ range: Variable
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Measurement
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+A quantity of money
+URI: fhir:MoneyQuantity
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| value | +0..1 Float |
+The value of the quantity | +direct | +
| unit | +0..1 CurrencyConcept |
+The currency of the quantity | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +fhir:MoneyQuantity | +
| native | +linkml_common:MoneyQuantity | +
name: MoneyQuantity
+description: A quantity of money
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ value:
+ name: value
+ description: The value of the quantity
+ from_schema: https://w3id.org/linkml-common/financial
+ range: float
+ unit:
+ name: unit
+ description: The currency of the quantity
+ from_schema: https://w3id.org/linkml-common/financial
+ role: currency
+ range: CurrencyConcept
+class_uri: fhir:MoneyQuantity
+
+name: MoneyQuantity
+description: A quantity of money
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ value:
+ name: value
+ description: The value of the quantity
+ from_schema: https://w3id.org/linkml-common/financial
+ alias: value
+ owner: MoneyQuantity
+ domain_of:
+ - SimpleQuantity
+ - MoneyQuantity
+ range: float
+ unit:
+ name: unit
+ description: The currency of the quantity
+ from_schema: https://w3id.org/linkml-common/financial
+ alias: unit
+ owner: MoneyQuantity
+ domain_of:
+ - SimpleQuantity
+ - MoneyQuantity
+ role: currency
+ range: CurrencyConcept
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: MoneyQuantity
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: fhir:MoneyQuantity
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +direct | +
| name | +0..1 String |
+A human-readable name for a thing | +direct | +
| type | +0..1 String |
+A type for a thing | +direct | +
| subtype | +0..1 String |
+An enum with a more specific type | +direct | +
| ontology_types | +0..* Concept |
++ | direct | +
| description | +0..1 String |
+A human-readable description for a thing | +direct | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| SampleCollectionProcess | +collected_from | +range | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:NamedThing | +
| native | +linkml_common:NamedThing | +
name: NamedThing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+slots:
+- id
+- name
+- type
+- subtype
+- ontology_types
+- description
+
+name: NamedThing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: NamedThing
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: NamedThing
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: NamedThing
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: NamedThing
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: NamedThing
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: NamedThing
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+Prefix part of CURIE
+URI: xsd:string
+ +A URI, CURIE or BNODE that represents a node in a model.
+URI: shex:nonLiteral
+ +A statement about the state of something
+URI: linkml_common:Observation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Observation | +
| native | +linkml_common:Observation | +
name: Observation
+description: A statement about the state of something
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+
+name: Observation
+description: A statement about the state of something
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Observation
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+Represents an Organization
+URI: linkml_common:Organization
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Organization | +
| native | +linkml_common:Organization | +
name: Organization
+description: Represents an Organization
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: Organization
+description: Represents an Organization
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Organization
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Organization
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Organization
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Organization
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Organization
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Organization
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| is_person | +0..1 Person |
++ | HealthcareRole | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareEncounter | +patient | +range | +Patient | +
| HealthcareConditionOccurrence | +patient | +range | +Patient | +
| ClinicalCohortEnrollment | +patient | +range | +Patient | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Patient | +
| native | +linkml_common:Patient | +
name: Patient
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: HealthcareRole
+
+name: Patient
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: HealthcareRole
+attributes:
+ is_person:
+ name: is_person
+ from_schema: https://w3id.org/linkml-common/healthcare
+ rank: 1000
+ alias: is_person
+ owner: Patient
+ domain_of:
+ - HealthcareRole
+ range: Person
+
+Represents a Person
+URI: linkml_common:Person
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| primary_email | +0..1 String |
+The main email address of a person | +direct | +
| birth_date | +0..1 Date |
+Date on which a person is born | +direct | +
| age_in_years | +0..1 Integer |
+Number of years since birth | +direct | +
| vital_status | +0..1 PersonStatus |
+living or dead status | +direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareRole | +is_person | +range | +Person | +
| HealthcareProvider | +is_person | +range | +Person | +
| Patient | +is_person | +range | +Person | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Person | +
| native | +linkml_common:Person | +
name: Person
+description: Represents a Person
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+slots:
+- primary_email
+- birth_date
+- age_in_years
+- vital_status
+slot_usage:
+ primary_email:
+ name: primary_email
+ domain_of:
+ - Person
+ pattern: ^\S+@[\S+\.]+\S+
+
+name: Person
+description: Represents a Person
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+slot_usage:
+ primary_email:
+ name: primary_email
+ domain_of:
+ - Person
+ pattern: ^\S+@[\S+\.]+\S+
+attributes:
+ primary_email:
+ name: primary_email
+ description: The main email address of a person
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:email
+ alias: primary_email
+ owner: Person
+ domain_of:
+ - Person
+ range: string
+ pattern: ^\S+@[\S+\.]+\S+
+ birth_date:
+ name: birth_date
+ description: Date on which a person is born
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:birthDate
+ alias: birth_date
+ owner: Person
+ domain_of:
+ - Person
+ range: date
+ age_in_years:
+ name: age_in_years
+ description: Number of years since birth
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: age_in_years
+ owner: Person
+ domain_of:
+ - Person
+ range: integer
+ vital_status:
+ name: vital_status
+ description: living or dead status
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: vital_status
+ owner: Person
+ domain_of:
+ - Person
+ range: PersonStatus
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Person
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Person
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Person
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Person
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Person
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Person
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: PersonStatus
+| Value | +Meaning | +Description | +
|---|---|---|
| ALIVE | +PATO:0001421 | +the person is living | +
| DEAD | +PATO:0001422 | +the person is deceased | +
| UNKNOWN | +None | +the vital status is not known | +
| Name | +Description | +
|---|---|
| vital_status | +living or dead status | +
name: PersonStatus
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+permissible_values:
+ ALIVE:
+ text: ALIVE
+ description: the person is living
+ meaning: PATO:0001421
+ DEAD:
+ text: DEAD
+ description: the person is deceased
+ meaning: PATO:0001422
+ UNKNOWN:
+ text: UNKNOWN
+ description: the vital status is not known
+ todos:
+ - map this to an ontology
+
+URI: linkml_common:PhysicalDevice
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| InvestigativeProcess | +uses_physical_device | +range | +PhysicalDevice | +
| SampleCollectionProcess | +uses_physical_device | +range | +PhysicalDevice | +
| SampleProcessing | +uses_physical_device | +range | +PhysicalDevice | +
| DataGenerationFromSample | +uses_physical_device | +range | +PhysicalDevice | +
| PlannedProcess | +uses_physical_device | +range | +PhysicalDevice | +
| MaterialCollection | +uses_physical_device | +range | +PhysicalDevice | +
| MaterialProcessing | +uses_physical_device | +range | +PhysicalDevice | +
| FoodProcessing | +uses_physical_device | +range | +PhysicalDevice | +
| EngineeringMaterialProcessing | +uses_physical_device | +range | +PhysicalDevice | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:PhysicalDevice | +
| native | +linkml_common:PhysicalDevice | +
name: PhysicalDevice
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: PhysicalDevice
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: PhysicalDevice
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: PhysicalDevice
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: PhysicalDevice
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: PhysicalDevice
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: PhysicalDevice
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: PhysicalDevice
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+Entities that have a somewhat fixed, physical extension.
+URI: schema:Place
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| address | +0..1 PostalAddress |
++ | direct | +
| geolocation | +0..1 GeoPointLocation |
+The geolocation of the place | +direct | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +schema:Place | +
| native | +linkml_common:Place | +
name: Place
+description: Entities that have a somewhat fixed, physical extension.
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+slots:
+- address
+- geolocation
+class_uri: schema:Place
+
+name: Place
+description: Entities that have a somewhat fixed, physical extension.
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ address:
+ name: address
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: address
+ owner: Place
+ domain_of:
+ - Place
+ range: PostalAddress
+ geolocation:
+ name: geolocation
+ description: The geolocation of the place
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: geolocation
+ owner: Place
+ domain_of:
+ - Place
+ range: GeoPointLocation
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Place
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Place
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Place
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Place
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Place
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Place
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+class_uri: schema:Place
+
+URI: linkml_common:PlannedProcess
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | direct | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | direct | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:PlannedProcess | +
| native | +linkml_common:PlannedProcess | +
name: PlannedProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ range: PhysicalDevice
+
+name: PlannedProcess
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Event
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: PlannedProcess
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: PlannedProcess
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: PlannedProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: PlannedProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: PlannedProcess
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: PlannedProcess
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: PlannedProcess
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: PlannedProcess
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: PlannedProcess
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: PlannedProcess
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:PointLocation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| + | + | + | + |
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:PointLocation | +
| native | +linkml_common:PointLocation | +
name: PointLocation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Location
+
+name: PointLocation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Location
+
+Represents an Address
+URI: schema:PostalAddress
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| street_address | +0..1 String |
+The street address | +direct | +
| street_address_additional | +0..1 String |
++ | direct | +
| city | +0..1 String |
+The city | +direct | +
| state | +0..1 String |
+The state | +direct | +
| postal_code | +0..1 String |
+The postal code or zip code | +direct | +
| country | +0..1 String |
+The country | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| HealthcareSite | +address | +range | +PostalAddress | +
| Place | +address | +range | +PostalAddress | +
| Landform | +address | +range | +PostalAddress | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +schema:PostalAddress | +
| native | +linkml_common:PostalAddress | +
| exact | +omopschema:CARE_SITE | +
name: PostalAddress
+description: Represents an Address
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CARE_SITE
+is_a: Entity
+attributes:
+ street_address:
+ name: street_address
+ description: The street address
+ from_schema: https://w3id.org/linkml-common/geography
+ exact_mappings:
+ - omopschema:address_1
+ rank: 1000
+ street_address_additional:
+ name: street_address_additional
+ from_schema: https://w3id.org/linkml-common/geography
+ exact_mappings:
+ - omopschema:address_2
+ rank: 1000
+ city:
+ name: city
+ description: The city
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ state:
+ name: state
+ description: The state
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ postal_code:
+ name: postal_code
+ description: The postal code or zip code
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ country:
+ name: country
+ description: The country
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+class_uri: schema:PostalAddress
+
+name: PostalAddress
+description: Represents an Address
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- omopschema:CARE_SITE
+is_a: Entity
+attributes:
+ street_address:
+ name: street_address
+ description: The street address
+ from_schema: https://w3id.org/linkml-common/geography
+ exact_mappings:
+ - omopschema:address_1
+ rank: 1000
+ alias: street_address
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ street_address_additional:
+ name: street_address_additional
+ from_schema: https://w3id.org/linkml-common/geography
+ exact_mappings:
+ - omopschema:address_2
+ rank: 1000
+ alias: street_address_additional
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ city:
+ name: city
+ description: The city
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: city
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ state:
+ name: state
+ description: The state
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: state
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ postal_code:
+ name: postal_code
+ description: The postal code or zip code
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: postal_code
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ country:
+ name: country
+ description: The country
+ from_schema: https://w3id.org/linkml-common/geography
+ rank: 1000
+ alias: country
+ owner: PostalAddress
+ domain_of:
+ - PostalAddress
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: PostalAddress
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: schema:PostalAddress
+
+A canonical series of actions conducted in a certain order or manner
+ +| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| SampleProcessing | +follows_procedure | +range | +Procedure | +
| PlannedProcess | +follows_procedure | +range | +Procedure | +
| MaterialCollection | +follows_procedure | +range | +Procedure | +
| MaterialProcessing | +follows_procedure | +range | +Procedure | +
| FoodProcessing | +follows_procedure | +range | +Procedure | +
| EngineeringMaterialProcessing | +follows_procedure | +range | +Procedure | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Procedure | +
| native | +linkml_common:Procedure | +
name: Procedure
+description: A canonical series of actions conducted in a certain order or manner
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: Procedure
+description: A canonical series of actions conducted in a certain order or manner
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Procedure
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Procedure
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Procedure
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Procedure
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Procedure
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Procedure
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:Publication
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Publication | +
| native | +linkml_common:Publication | +
name: Publication
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: Publication
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: Publication
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: Publication
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Publication
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: Publication
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: Publication
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: Publication
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: fhir:Quantity
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| type | +0..1 String |
+A type for a thing | +Entity | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| Ratio | +numerator | +range | +Quantity | +
| Ratio | +denominator | +range | +Quantity | +
| QuantityRange | +lower_bound | +range | +Quantity | +
| QuantityRange | +upper_bound | +range | +Quantity | +
| UnitConversionOperation | +inputs | +range | +Quantity | +
| UnitConversionOperation | +outputs | +range | +Quantity | +
| Measurement | +quantity_measured | +range | +Quantity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +fhir:Quantity | +
| native | +linkml_common:Quantity | +
name: Quantity
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+class_uri: fhir:Quantity
+union_of:
+- Quantity
+- QuantityRange
+- Ratio
+
+name: Quantity
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Quantity
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: fhir:Quantity
+union_of:
+- Quantity
+- QuantityRange
+- Ratio
+
+A quantity range is a property that can be measured or counted
+URI: fhir:Range
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| lower_bound | +0..1 Quantity |
+The lower bound of the range | +direct | +
| upper_bound | +0..1 Quantity |
+The upper bound of the range | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +fhir:Range | +
| native | +linkml_common:QuantityRange | +
name: QuantityRange
+description: A quantity range is a property that can be measured or counted
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ lower_bound:
+ name: lower_bound
+ description: The lower bound of the range
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: Quantity
+ upper_bound:
+ name: upper_bound
+ description: The upper bound of the range
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: Quantity
+class_uri: fhir:Range
+
+name: QuantityRange
+description: A quantity range is a property that can be measured or counted
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Intangible
+attributes:
+ lower_bound:
+ name: lower_bound
+ description: The lower bound of the range
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: lower_bound
+ owner: QuantityRange
+ domain_of:
+ - QuantityRange
+ range: Quantity
+ upper_bound:
+ name: upper_bound
+ description: The upper bound of the range
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: upper_bound
+ owner: QuantityRange
+ domain_of:
+ - QuantityRange
+ range: Quantity
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: QuantityRange
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: fhir:Range
+
+A tuple of two quantities
+URI: fhir:Ratio
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| numerator | +0..1 Quantity |
+The numerator of the ratio | +direct | +
| denominator | +0..1 Quantity |
+The denominator of the ratio | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +fhir:Ratio | +
| native | +linkml_common:Ratio | +
name: Ratio
+description: A tuple of two quantities
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ numerator:
+ name: numerator
+ description: The numerator of the ratio
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: Quantity
+ denominator:
+ name: denominator
+ description: The denominator of the ratio
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: Quantity
+class_uri: fhir:Ratio
+
+name: Ratio
+description: A tuple of two quantities
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ numerator:
+ name: numerator
+ description: The numerator of the ratio
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: numerator
+ owner: Ratio
+ domain_of:
+ - Ratio
+ range: Quantity
+ denominator:
+ name: denominator
+ description: The denominator of the ratio
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: denominator
+ owner: Ratio
+ domain_of:
+ - Ratio
+ range: Quantity
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Ratio
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: fhir:Ratio
+
+URI: linkml_common:RawMaterial
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:RawMaterial | +
| native | +linkml_common:RawMaterial | +
name: RawMaterial
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: RawMaterial
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: RawMaterial
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: RawMaterial
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: RawMaterial
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: RawMaterial
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: RawMaterial
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: RawMaterial
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:Relationship
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| + | + | + | + |
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Relationship | +
| native | +linkml_common:Relationship | +
name: Relationship
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+
+name: Relationship
+from_schema: https://w3id.org/linkml/linkml-common
+abstract: true
+
+URI: linkml_common:SampleCollectionProcess
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| material_collected | +0..1 SampleMaterial |
++ | direct | +
| collected_from | +0..1 NamedThing |
++ | direct | +
| follows_procedure | +0..1 InvestigativeProtocol |
++ | PlannedProcess, InvestigativeProcess | +
| part_of | +0..1 Investigation |
++ | InvestigativeProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:SampleCollectionProcess | +
| native | +linkml_common:SampleCollectionProcess | +
| exact | +nmdcschema:CollectingBiosamplesFromSite | +
name: SampleCollectionProcess
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- nmdcschema:CollectingBiosamplesFromSite
+is_a: InvestigativeProcess
+attributes:
+ material_collected:
+ name: material_collected
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ range: SampleMaterial
+ collected_from:
+ name: collected_from
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ range: NamedThing
+
+name: SampleCollectionProcess
+from_schema: https://w3id.org/linkml/linkml-common
+exact_mappings:
+- nmdcschema:CollectingBiosamplesFromSite
+is_a: InvestigativeProcess
+attributes:
+ material_collected:
+ name: material_collected
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: material_collected
+ owner: SampleCollectionProcess
+ domain_of:
+ - SampleCollectionProcess
+ range: SampleMaterial
+ collected_from:
+ name: collected_from
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: collected_from
+ owner: SampleCollectionProcess
+ domain_of:
+ - SampleCollectionProcess
+ range: NamedThing
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: follows_procedure
+ owner: SampleCollectionProcess
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: InvestigativeProtocol
+ part_of:
+ name: part_of
+ from_schema: https://w3id.org/linkml-common/investigations
+ rank: 1000
+ alias: part_of
+ owner: SampleCollectionProcess
+ domain_of:
+ - InvestigativeProcess
+ - EngineeringProcess
+ range: Investigation
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: SampleCollectionProcess
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: SampleCollectionProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: SampleCollectionProcess
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: SampleCollectionProcess
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: SampleCollectionProcess
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: SampleCollectionProcess
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: SampleCollectionProcess
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: SampleCollectionProcess
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: SampleCollectionProcess
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:SampleMaterial
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| SampleCollectionProcess | +material_collected | +range | +SampleMaterial | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:SampleMaterial | +
| native | +linkml_common:SampleMaterial | +
name: SampleMaterial
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+
+name: SampleMaterial
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: NamedThing
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: SampleMaterial
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: SampleMaterial
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: SampleMaterial
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: SampleMaterial
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: SampleMaterial
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: SampleMaterial
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:SampleProcessing
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| follows_procedure | +0..1 Procedure |
++ | PlannedProcess | +
| uses_physical_device | +0..1 PhysicalDevice |
++ | PlannedProcess | +
| starts_at | +0..1 TimePoint |
++ | Event | +
| ends_at | +0..1 TimePoint |
++ | Event | +
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:SampleProcessing | +
| native | +linkml_common:SampleProcessing | +
name: SampleProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+
+name: SampleProcessing
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MaterialProcessing
+attributes:
+ follows_procedure:
+ name: follows_procedure
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ alias: follows_procedure
+ owner: SampleProcessing
+ domain_of:
+ - InvestigativeProcess
+ - PlannedProcess
+ - EngineeringProcess
+ range: Procedure
+ uses_physical_device:
+ name: uses_physical_device
+ from_schema: https://w3id.org/linkml-common/plannedprocess
+ rank: 1000
+ alias: uses_physical_device
+ owner: SampleProcessing
+ domain_of:
+ - PlannedProcess
+ range: PhysicalDevice
+ starts_at:
+ name: starts_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: starts_at
+ owner: SampleProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ ends_at:
+ name: ends_at
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: ends_at
+ owner: SampleProcessing
+ domain_of:
+ - Event
+ range: TimePoint
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: SampleProcessing
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: SampleProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: SampleProcessing
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: SampleProcessing
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: SampleProcessing
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: SampleProcessing
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A quantity is a property that can be measured or counted
+URI: fhir:SimpleQuantity
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| value | +0..1 Float |
+The value of the quantity | +direct | +
| unit | +0..1 UnitConcept |
++ | direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +fhir:SimpleQuantity | +
| native | +linkml_common:SimpleQuantity | +
name: SimpleQuantity
+description: A quantity is a property that can be measured or counted
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ value:
+ name: value
+ description: The value of the quantity
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: float
+ unit:
+ name: unit
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ range: UnitConcept
+class_uri: fhir:SimpleQuantity
+
+name: SimpleQuantity
+description: A quantity is a property that can be measured or counted
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Quantity
+attributes:
+ value:
+ name: value
+ description: The value of the quantity
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: value
+ owner: SimpleQuantity
+ domain_of:
+ - SimpleQuantity
+ - MoneyQuantity
+ range: float
+ unit:
+ name: unit
+ from_schema: https://w3id.org/linkml-common/quantities
+ rank: 1000
+ alias: unit
+ owner: SimpleQuantity
+ domain_of:
+ - SimpleQuantity
+ - MoneyQuantity
+ range: UnitConcept
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: SimpleQuantity
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+class_uri: fhir:SimpleQuantity
+
+A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF.
+URI: xsd:string
+ +A character string
+URI: xsd:string
+ +| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| date_value | +0..1 Date |
++ | direct | +
| time_value | +0..1 Time |
++ | direct | +
| datetime_value | +0..1 Datetime |
++ | direct | +
| marker_event | +0..1 Event |
++ | direct | +
| description | +0..1 String |
+A human-readable description for a thing | +direct | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:TimePoint | +
| native | +linkml_common:TimePoint | +
name: TimePoint
+from_schema: https://w3id.org/linkml/linkml-common
+slots:
+- date_value
+- time_value
+- datetime_value
+- marker_event
+- description
+
+name: TimePoint
+from_schema: https://w3id.org/linkml/linkml-common
+attributes:
+ date_value:
+ name: date_value
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: date_value
+ owner: TimePoint
+ domain_of:
+ - TimePoint
+ range: date
+ time_value:
+ name: time_value
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: time_value
+ owner: TimePoint
+ domain_of:
+ - TimePoint
+ range: time
+ datetime_value:
+ name: datetime_value
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: datetime_value
+ owner: TimePoint
+ domain_of:
+ - TimePoint
+ range: datetime
+ marker_event:
+ name: marker_event
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: marker_event
+ owner: TimePoint
+ domain_of:
+ - TimePoint
+ range: Event
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: TimePoint
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+URI: linkml_common:UnitConcept
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| id | +1..1 Uriorcurie |
+A unique identifier for a thing | +NamedThing | +
| name | +0..1 String |
+A human-readable name for a thing | +NamedThing | +
| type | +0..1 String |
+A type for a thing | +Entity, NamedThing | +
| subtype | +0..1 String |
+An enum with a more specific type | +NamedThing | +
| ontology_types | +0..* Concept |
++ | NamedThing | +
| description | +0..1 String |
+A human-readable description for a thing | +NamedThing | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| SimpleQuantity | +unit | +range | +UnitConcept | +
| Variable | +allowed_units | +range | +UnitConcept | +
Instances of this class should have identifiers with one of the following prefixes:
+UO
+UCUM
+qudt
+| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:UnitConcept | +
| native | +linkml_common:UnitConcept | +
name: UnitConcept
+id_prefixes:
+- UO
+- UCUM
+- qudt
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+
+name: UnitConcept
+id_prefixes:
+- UO
+- UCUM
+- qudt
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Concept
+attributes:
+ id:
+ name: id
+ description: A unique identifier for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:identifier
+ identifier: true
+ alias: id
+ owner: UnitConcept
+ domain_of:
+ - NamedThing
+ range: uriorcurie
+ required: true
+ name:
+ name: name
+ description: A human-readable name for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:name
+ alias: name
+ owner: UnitConcept
+ domain_of:
+ - NamedThing
+ range: string
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: UnitConcept
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+ subtype:
+ name: subtype
+ description: An enum with a more specific type
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ alias: subtype
+ owner: UnitConcept
+ domain_of:
+ - NamedThing
+ range: string
+ ontology_types:
+ name: ontology_types
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ multivalued: true
+ alias: ontology_types
+ owner: UnitConcept
+ domain_of:
+ - NamedThing
+ range: Concept
+ description:
+ name: description
+ description: A human-readable description for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ slot_uri: schema:description
+ alias: description
+ owner: UnitConcept
+ domain_of:
+ - TimePoint
+ - NamedThing
+ range: string
+
+A unit conversion operation
+URI: linkml_common:UnitConversionOperation
+| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| inputs | +0..* Quantity |
+The input unit | +MathematicalOperation | +
| outputs | +0..* Quantity |
+The output unit | +MathematicalOperation | +
| parts | +0..* MathematicalOperation |
+The parts of the process | +MathematicalOperation | +
| immediate_preceding_steps | +0..* MathematicalOperation |
+The steps that immediately precede this step | +MathematicalOperation | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:UnitConversionOperation | +
| native | +linkml_common:UnitConversionOperation | +
name: UnitConversionOperation
+description: A unit conversion operation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MathematicalOperation
+slot_usage:
+ inputs:
+ name: inputs
+ description: The input unit
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+ outputs:
+ name: outputs
+ description: The output unit
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+
+name: UnitConversionOperation
+description: A unit conversion operation
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: MathematicalOperation
+slot_usage:
+ inputs:
+ name: inputs
+ description: The input unit
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+ outputs:
+ name: outputs
+ description: The output unit
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+attributes:
+ inputs:
+ name: inputs
+ description: The input unit
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: inputs
+ owner: UnitConversionOperation
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+ outputs:
+ name: outputs
+ description: The output unit
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: outputs
+ owner: UnitConversionOperation
+ domain_of:
+ - MathematicalOperation
+ range: Quantity
+ maximum_cardinality: 1
+ parts:
+ name: parts
+ description: The parts of the process
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: parts
+ owner: UnitConversionOperation
+ domain_of:
+ - MathematicalOperation
+ range: MathematicalOperation
+ immediate_preceding_steps:
+ name: immediate_preceding_steps
+ description: The steps that immediately precede this step
+ from_schema: https://w3id.org/linkml-common/core
+ rank: 1000
+ multivalued: true
+ alias: immediate_preceding_steps
+ owner: UnitConversionOperation
+ domain_of:
+ - MathematicalOperation
+ range: MathematicalOperation
+
+a complete URI
+URI: xsd:anyURI
+ +a URI or a CURIE
+URI: xsd:anyURI
+ +| Name | +Cardinality and Range | +Description | +Inheritance | +
|---|---|---|---|
| allowed_units | +0..* UnitConcept |
+The units that are allowed for this variable | +direct | +
| type | +0..1 String |
+A type for a thing | +Entity | +
| used by | +used in | +type | +used | +
|---|---|---|---|
| Measurement | +variable_measured | +range | +Variable | +
| Mapping Type | +Mapped Value | +
|---|---|
| self | +linkml_common:Variable | +
| native | +linkml_common:Variable | +
name: Variable
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+attributes:
+ allowed_units:
+ name: allowed_units
+ description: The units that are allowed for this variable
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ multivalued: true
+ range: UnitConcept
+
+name: Variable
+from_schema: https://w3id.org/linkml/linkml-common
+is_a: Entity
+attributes:
+ allowed_units:
+ name: allowed_units
+ description: The units that are allowed for this variable
+ from_schema: https://w3id.org/linkml-common/meaurements
+ rank: 1000
+ multivalued: true
+ alias: allowed_units
+ owner: Variable
+ domain_of:
+ - Variable
+ range: UnitConcept
+ type:
+ name: type
+ description: A type for a thing
+ from_schema: https://w3id.org/linkml/linkml-common
+ rank: 1000
+ designates_type: true
+ alias: type
+ owner: Variable
+ domain_of:
+ - Entity
+ - NamedThing
+ range: string
+
+Common Data Model Elements
+ + + + + + +| Name | +Description | +Modifies Slot | +
|---|---|---|
| Place | +Entities that have a somewhat fixed, physical extension | +no | +
| HealthcareSite | ++ | no | +
| Landform | +A natural feature of the solid surface of the Earth or other planetary body | +no | +
name: address
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+alias: address
+domain_of:
+- Place
+range: PostalAddress
+
+Number of years since birth
+URI: linkml_common:age_in_years
+ + +| Name | +Description | +Modifies Slot | +
|---|---|---|
| Person | +Represents a Person | +no | +
name: age_in_years
+description: Number of years since birth
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+alias: age_in_years
+domain_of:
+- Person
+range: integer
+
+The units that are allowed for this variable
+URI: linkml_common:allowed_units
+ + +| Name | +Description | +Modifies Slot | +
|---|---|---|
| Variable | ++ | no | +
Range: UnitConcept
+Multivalued: True
+name: allowed_units
+description: The units that are allowed for this variable
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+multivalued: true
+alias: allowed_units
+owner: Variable
+domain_of:
+- Variable
+range: UnitConcept
+
+The altitude of the location
+ + + +| Name | +Description | +Modifies Slot | +
|---|---|---|
| GeoPointLocation | ++ | no | +
name: altitude
+description: The altitude of the location
+from_schema: https://w3id.org/linkml/linkml-common
+rank: 1000
+alias: altitude
+owner: GeoPointLocation
+domain_of:
+- GeoPointLocation
+range: decimal
+unit:
+ ucum_code: m
+
+\n {translation(\"search.result.term.missing\")}: {...missing}\n
\n }\n \n