run_constax.sb

#!/bin/bash --login
########## Define Resources Needed with SBATCH Lines ##########

#SBATCH --time=4:00:00             # limit of wall clock time - how long the job will run (same as -t)
#SBATCH --ntasks=1                 # number of tasks - how many tasks (nodes) that you require (same as -n)
#SBATCH --cpus-per-task=16          # number of CPUs (or cores) per task (same as -c)
#SBATCH --mem=128G                   # memory required per node - amount of memory (in bytes)
#SBATCH --job-name constax_sil_bact          # you can give your job a name for easier identification (same as -J)
#SBATCH --output=%x-%j.SLURMout

########## Command Lines to Run ##########

cd ${SLURM_SUBMIT_DIR}

constax -c 0.8 -b -i otus_R1.fasta -n $SLURM_CPUS_PER_TASK -d SILVA_138_SSURef_tax_silva_bact.fasta -f tf_sil_bact --mem $SLURM_MEM_PER_NODE -m 20

scontrol show job $SLURM_JOB_ID     ### write job information to output file