README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# Rubrary

<!-- badges: start -->

[![R-CMD-check](https://github.com/liaoyjruby/Rubrary/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/liaoyjruby/Rubrary/actions/workflows/R-CMD-check.yaml)

<!-- badges: end -->

Personal functions, mostly for usage in Graeber Lab OV project analysis workflows and to test R package building. All functions subject to sudden changes.

Installing this package will install many packages used throughout Graeber lab analyses. Certain packages not installed but listed as "Suggested" may be prompted for installation upon running a relevant function.

## Installation

You can install the development version of Rubrary from [GitHub](https://github.com/liaoyjruby/Rubrary/) with:

``` r
if (!require("devtools", quietly = TRUE))
    install.packages("devtools")

devtools::install_github("liaoyjruby/Rubrary")
```

## Vignettes

- [Principal Component Analysis (PCA) Quickstart](https://www.liaoyjruby.com/Rubrary/articles/PCA_Quickstart.html)
- [Principial Component Analysis (PCA) Walkthrough](https://www.liaoyjruby.com/Rubrary/articles/PCA_Walkthrough.html)
- [Differential Gene Expression](https://www.liaoyjruby.com/Rubrary/articles/DE_Genes.html)
- [Gene Set Enrichment Analysis (GSEA) & GSEA Squared](https://www.liaoyjruby.com/Rubrary/articles/GSEA.html)