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PublicationsParser.py
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PublicationsParser.py
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import xml.etree.ElementTree as ET
import time
import MySQLProcessor
import re
import SourceParser
import os
import multiprocessing
import LogProcessor
import urllib
class PublicationsParser():
"""
UPET(USPTO Patent Exploring Tool)
provides Python code for downloading, parsing, and loading USPTO patent bulk data into a local MySQL database.
Website:
http://abel.lis.illinois.edu/upet/
Authors:
Qiyuan Liu (http://liuqiyuan.com, [email protected]),
Vetle I. Torvik (http://people.lis.illinois.edu/~vtorvik/, [email protected])
Updated:
12/09/2012
"""
"""
Used to parse Patent Applicaiton Publications data and populate them into the database.
1. obtain contents from SourceParser.py
2. parse the content and generate .csv files
3. load .csv files into the database.
"""
def __init__(self):
self.pubCountry=''
self.pubNo=''
self.kind=''
self.pubDate=''
self.appCountry=''
self.appNo=''
self.appNoOrig=''
self.appDate=''
self.appType=''
self.seriesCode=''
# priority claims
self.pcSequence=''
self.pcKind=''
self.pcCountry=''
self.pcDocNum=''
self.pcDate=''
self.priClaim=[]
self.priClaimsList=[]
# international classification
self.iClassVersionDate=''
self.iClassLevel=''
self.iClassSec='' #section
self.iClassCls='' #mainclass
self.iClassSub='' #subclass
self.iClassMgr='' #main group
self.iClassSgr='' #subgroup
self.iClassSps='' #symbol position
self.iClassVal='' # classification value
self.iClassActionDate=''
self.iClassGnr='' # generating office
self.iClassStatus='' #status
self.iClassDS='' #data source
self.iClassList=[]
#national classification
self.nClassCountry=''
self.nClassMain=''
self.nSubclass=''
self.nClassInfo='' #mainClass=nClassInfo[0:3] subClass=nClassInfo[3:len(nClassInfo)]
self.nClassList=[]
self.title=''
# citations
self.ctNum=''
self.pctCountry='' # pct : patent citation
self.pctDocNo=''
self.pctKind=''
self.pctName=''
self.pctDate=''
self.pctCategory=''
self.pctClassNation=''
self.pctClassMain=''
self.pctClassList=[]
self.pcitation=[]
self.pcitationsList=[] # list of pcitation
self.pcitationsList_US=[]
self.pcitationsList_FC=[]
self.npctDoc=''
self.npctCategory=''
self.npcitation=[]
self.npcitationsList=[] # list of npcitation
self.claimsNum=''
self.figuresNum=''
self.drawingsNum=''
# ommit us-related-documents
# inventors info.
self.itSequence=''
self.itFirstName='' #it inventor
self.itLastName=''
self.itCity=''
self.itState=''
self.itCountry=''
self.itNationality=''
self.itResidence=''
self.inventor=[]
self.inventorsList=[]
# attorney
# attorney maybe organizations or, one or more than one person
self.atnSequence=''
self.atnLastName=''
self.atnFirstName=''
self.atnOrgName=''
self.atnCountry=''
self.attorney=[]
self.attorneyList=[]
#assignee
self.asnSequence=''
self.asnOrgName=''
self.asnRole=''
self.asnCity=''
self.asnState=''
self.asnCountry=''
self.assignee=[]
self.assigneeList=[]
#examiners
#primary-examiner & assistant-examiner
self.exmLastName=''
self.exmFirstName=''
self.exmDepartment=''
self.examiner=[]
self.examinerList=[]
self.abstract=''
self.claims=''
self.test='' #used for testing
self.position=1
self.count=1
self.csvPath_publication=os.getcwd()+'/CSV_P/publications.csv'
self.csvPath_agent=os.getcwd()+'/CSV_P/agent.csv'
self.csvPath_assignee=os.getcwd()+'/CSV_P/assignee.csv'
self.csvPath_examiner=os.getcwd()+'/CSV_P/examiner.csv'
self.csvPath_intclass=os.getcwd()+'/CSV_P/intclass.csv'
self.csvPath_inventor=os.getcwd()+'/CSV_P/inventor.csv'
self.csvPath_pubcit=os.getcwd()+'/CSV_P/pubcit.csv'
self.csvPath_gracit=os.getcwd()+'/CSV_P/gracit.csv'
self.csvPath_forpatcit=os.getcwd()+'/CSV_P/forpatcit.csv'
self.csvPath_nonpatcit=os.getcwd()+'/CSV_P/nonpatcit.csv'
self.csvPath_usclass=os.getcwd()+'/CSV_P/usclass.csv'
def __ResetSQLVariables(self):
# ***************** SQL ***************************
self.sql_publication=[] #publications
self.sql_grant=[] #grants
self.sql_examiner=[]
self.sql_assignee=[]
self.sql_agent=[]
self.sql_inventor=[]
self.sql_usclass=[]
self.sql_intclass=[]
self.sql_pubcit=[] #publication citations
self.sql_gracit=[] #grant citations
self.sql_forpatcit=[] #foreign patent citations
self.sql_nonpatcit=[] #none-patent citations
def __checkTag(self,x,tagName=''):
if(x.tag==tagName):
return True
else:
return False
def __returnClass(self,s='D 2860'):
"""
Main Class (3):'D02','PLT','000'
SubClass (3.3):
"""
mc=s[0:3].replace(' ','')
sc=s[3:len(s)]
sc1=sc[0:3].replace(' ','0')
sc2=sc[3:len(sc)].replace(' ','')
if(len(mc)<=3):
if(mc.find('D')>-1 and len(mc)==2):mc=mc[0]+'0'+mc[1]
elif(len(mc)==2):mc='0'+mc
elif(len(mc)==1):mc='00'+mc
if(len(sc2)<=3):
if(len(sc2)==2):sc2='0'+sc2
elif(len(sc2)==1):sc2='00'+sc2
elif(len(sc2)==0):sc2='000'
clist=[mc,sc1+sc2]
return clist
def __returnDate(self,timeStr):
if(len(timeStr)>7):
return timeStr[0:4]+'-'+timeStr[4:6]+'-'+timeStr[6:8]
else:
return None
def __returnInt(self,s):
try:
if(s=='' or s==None):return 'NULL';
else:return int(s)
except:return 'NULL'
def __returnStr(self,s):
try:
if(s=='' or s==None):return '';
else:return s.encode('utf-8').replace('"','\'').strip()
except:return ''
def extractXML4(self,xmlStr):
print '- Starting read .xml'
self.__ResetSQLVariables()
btime=time.time()
patentRoot=ET.fromstring(xmlStr)
#patentRoot=ET.ElementTree().parse('D:\PatentsData\PG_BD\haha.xml')
print '[Finished read xml. Time:{0}]'.format(time.time()-btime)
print '- Starting extract .xml'
btime=time.time()
# regular info.
for root in patentRoot.findall('us-patent-application'):
self.__init__()
for r in root.findall('us-bibliographic-data-application'):
for pr in r.findall('publication-reference'):
for di in pr.findall('document-id'):
self.pubCountry=di.findtext('country')
self.pubNo=di.findtext('doc-number')
self.kind=di.findtext('kind')
self.pubDate=di.findtext('date')
for ar in r.getiterator('application-reference'):
self.appType=ar.attrib['appl-type']
for di in ar.findall('document-id'):
self.appCountry=di.findtext('country')
self.appNo=di.findtext('doc-number')
self.appDate=di.findtext('date')
self.seriesCode=r.findtext('us-application-series-code')
#for pc in r.findall('priority-claims'):
# for pcs in pc.getiterator('priority-claim'):
# self.pcSequence=pcs.attrib['sequence']
# self.pcKind=pcs.attrib['kind']
# self.pcCountry=pcs.findtext('country')
# self.pcDocNum=pcs.findtext('doc-number')
# self.pcDate=pcs.findtext('date')
# self.priClaim=[self.pcSequence,self.pcKind,self.pcCountry,self.pcDocNum,self.pcDate]
# self.priClaimsList.append(self.priClaim)
for ic in r.findall('classifications-ipcr'):
self.position=1
for icc in ic.findall('classification-ipcr'):
for ivi in icc.findall('ipc-version-indicator'):
self.iClassVersionDate=ivi.findtext('date')
for ad in icc.getiterator('action-date'):
self.iClassActionDate=ad.findtext('date')
for go in icc.findall('generating-office'):
self.iClassGnr=go.findtext('country')
for x in icc.getchildren():
if(self.__checkTag(x,'classification-level')):self.iClassLevel=x.text
if(self.__checkTag(x,'section')):self.iClassSec=x.text
if(self.__checkTag(x,'class')):self.iClassCls=x.text
if(self.__checkTag(x,'subclass')):self.iClassSub=x.text
if(self.__checkTag(x,'main-group')):self.iClassMgr=x.text
if(self.__checkTag(x,'subgroup')):self.iClassSgr=x.text
if(self.__checkTag(x,'symbol-position')): self.iClassSps=x.text
if(self.__checkTag(x,'classification-value')):self.iClassVal=x.text
if(self.__checkTag(x,'classfication-status')):self.iClassStatus=x.text
if(self.__checkTag(x,'classification-date-source')):self.iClassDS=x.text
#self.iClassList.append([self.pubNo,self.position,self.iClassSec,self.iClassCls,self.iClassSub,self.iClassMgr,self.iClassSgr])
self.sql_intclass.append([self.pubNo,self.position,self.iClassSec,self.iClassCls,self.iClassSub,self.iClassMgr,self.iClassSgr])
self.position+=1
for nc in r.findall('classification-national'):
self.position=1
self.nClassCountry=nc.findtext('country')
self.nClassInfo=nc.findtext('main-classification')
self.nClassMain=self.__returnClass(self.nClassInfo)[0]
self.nSubclass=self.__returnClass(self.nClassInfo)[1]
self.sql_usclass.append([self.pubNo,self.position,self.__returnStr(self.nClassMain),self.__returnStr(self.nSubclass)])
nClassFurRoot=nc.findall('further-classification') #return a list of all elements
for n in nClassFurRoot: #return a list of all subelements
self.position+=1
self.nClassInfo=n.text
self.nClassMain=self.__returnClass(self.nClassInfo)[0]
self.nSubclass=self.__returnClass(self.nClassInfo)[1]
self.sql_usclass.append([self.pubNo,self.position,self.__returnStr(self.nClassMain),self.__returnStr(self.nSubclass)])
try:
self.title=r.findtext('invention-title')
except:
self.title='TITLE ERROR'
print '******************************************************************** Title Error **********************************'
continue
for rf in r.findall('references-cited'):
for rfc in rf.findall('citation'):
if(rfc.find('patcit')!=None):
self.ctNum=rfc.find('patcit').attrib['num']
for x in rfc.findall('patcit'):
self.pctCountry=x.find('document-id').findtext('country')
self.pctDocNo=x.find('document-id').findtext('doc-number')
self.pctKind=x.find('document-id').findtext('kind')
self.pctName=x.find('document-id').findtext('name')
self.pctDate=x.find('document-id').findtext('date')
self.pctCategory=rfc.findtext('category')
#us patent citations
if(self.pctCountry.strip().upper()=='US'):
if(self.pctDocNo.find('/')>-1):
self.sql_pubcit.append([self.pubNo,self.ctNum,self.pctDocNo,self.pctKind,self.__returnStr(self.pctName),self.__returnDate(self.pctDate),self.pctCountry,self.__returnStr(self.pctCategory)])
else:
self.sql_gracit.append([self.pubNo,self.ctNum,self.pctDocNo,self.pctKind,self.__returnStr(self.pctName),self.__returnDate(self.pctDate),self.pctCountry,self.__returnStr(self.pctCategory)])
elif(self.pctCountry.strip().upper()!='US'):
self.sql_forpatcit.append([self.pubNo,self.ctNum,self.pctDocNo,self.pctKind,self.__returnStr(self.pctName),self.__returnDate(self.pctDate),self.pctCountry,self.__returnStr(self.pctCategory)])
elif(rfc.find('nplcit')!=None):
self.ctNum=rfc.find('nplcit').attrib['num']
# sometimes, there will be '<i> or <sup>, etc.' in the reference string; we need to remove it
self.npctDoc=ET.tostring(rfc.find('nplcit').find('othercit'))
self.npctDoc=re.sub('<[^>]+>','',self.npctDoc).rstrip('\n')
self.npctCategory=rfc.findtext('category')
self.sql_nonpatcit.append([self.pubNo,self.ctNum,self.__returnStr(self.npctDoc),self.__returnStr(self.npctCategory)])
self.claimsNum=r.findtext('number-of-claims')
for nof in r.findall('figures'):
self.drawingsNum=nof.findtext('number-of-drawing-sheets')
self.figuresNum=nof.findtext('number-of-figures')
for prt in r.findall('parties'):
for apts in prt.findall('applicants'):
for apt in apts.findall('applicant'):
self.itSequence=apt.attrib['sequence']
if(apt.find('addressbook')!=None):
self.itFirstName=apt.find('addressbook').findtext('first-name')
self.itLastName=apt.find('addressbook').findtext('last-name')
self.itCity=apt.find('addressbook').find('address').findtext('city')
self.itState=apt.find('addressbook').find('address').findtext('state')
self.itCountry=apt.find('addressbook').find('address').findtext('country')
self.itNationality=apt.find('nationality').findtext('country')
self.itResidence=apt.find('residence').findtext('country')
self.sql_inventor.append([self.pubNo,self.itSequence,self.__returnStr(self.itFirstName),self.__returnStr(self.itLastName),self.__returnStr(self.itCity),self.__returnStr(self.itState),self.__returnStr(self.itCountry),self.__returnStr(self.itNationality),self.__returnStr(self.itResidence)])
for agns in prt.findall('agents'):
for agn in agns.findall('agent'):
self.asnSequence=agn.attrib['sequence']
if(agn.find('addressbook')!=None):
self.atnOrgName=agn.find('addressbook').findtext('orgname')
self.atnLastName=agn.find('addressbook').findtext('last-name')
self.atnFirstName=agn.find('addressbook').findtext('first-name')
self.atnCountry=agn.find('addressbook').find('address').findtext('country')
self.sql_agent.append([self.pubNo,self.asnSequence,self.__returnStr(self.atnOrgName),self.__returnStr(self.atnLastName),self.__returnStr(self.atnFirstName),self.__returnStr(self.atnCountry)])
for asn in r.findall('assignees'):
self.position=1
for x in asn.findall('assignee'):
if(x.find('addressbook')!=None):
self.asnOrgName=x.find('addressbook').findtext('orgname')
self.asnRole=x.find('addressbook').findtext('role')
self.asnCity=x.find('addressbook').find('address').findtext('city')
self.asnState=x.find('addressbook').find('address').findtext('state')
self.asnCountry=x.find('addressbook').find('address').findtext('country')
self.sql_assignee.append([self.pubNo,self.position,self.__returnStr(self.asnOrgName),self.asnRole,self.__returnStr(self.asnCity),self.__returnStr(self.asnState),self.__returnStr(self.asnCountry)])
self.position+=1
for exm in r.findall('examiners'):
for x in exm.findall('primary-examiner'):
self.exmLastName=x.findtext('last-name')
self.exmFirstName=x.findtext('first-name')
self.exmDepartment=x.findtext('department')
self.sql_examiner.append([self.pubNo,1,self.__returnStr(self.exmLastName),self.__returnStr(self.exmFirstName),self.__returnStr(self.exmDepartment)])
for x in exm.findall('assistant-examiner'):
self.exmLastName=x.findtext('last-name')
self.exmFirstName=x.findtext('first-name')
self.exmDepartment=x.findtext('department')
self.sql_examiner.append([self.pubNo,2,self.__returnStr(self.exmLastName),self.__returnStr(self.exmFirstName),self.__returnStr(self.exmDepartment)])
#self.abstract=root.findtext('abstract')
for abs in root.findall('abstract'):
self.abstract=re.sub('<[^>]+>','',ET.tostring(abs)).strip()
# ****** SQL Variables ********
self.sql_publication.append([self.pubNo,self.__returnStr(self.title),self.__returnDate(self.pubDate),self.kind,self.seriesCode,
self.__returnStr(self.abstract),self.__returnInt(self.claimsNum),self.__returnInt(self.drawingsNum),
self.__returnInt(self.figuresNum),self.__returnStr(self.appNo),self.__returnStr(self.claims),
self.__returnDate(self.appDate),self.appType])
print '===== PUBLICATION ====='
print len(self.sql_publication)
print '===== EXAMINER ====='
print len(self.sql_examiner)
print '===== ASSIGNEE ====='
print len(self.sql_assignee)
print '===== AGENT ====='
print len(self.sql_agent)
print '===== INVENTOR ====='
print len(self.sql_inventor)
print '===== USCLASS ====='
print len(self.sql_usclass)
print '===== INTCLASS ====='
print len(self.sql_intclass)
print '===== PUBCIT ====='
print len(self.sql_pubcit)
print '===== GRACIT ====='
print len(self.sql_gracit)
print '===== FORPATCIT ====='
print len(self.sql_forpatcit)
print '===== NONPATCIT ====='
print len(self.sql_nonpatcit)
print '[Extracted .xml. Time:{0}]'.format(time.time()-btime)
def __returnElementText(self,xmlElement):
if(ET.iselement(xmlElement)):
elementStr=ET.tostring(xmlElement)
return re.sub('<[^<]*>','',elementStr).strip()
else:return ''
def extractXML1(self,xmlStr):
print '- Starting read .xml'
self.__ResetSQLVariables()
btime=time.time()
patentRoot=ET.fromstring(xmlStr)
#patentRoot=ET.ElementTree().parse('D:\PatentsData\PG_BD\haha.xml')
print '[Finished read xml. Time:{0}]'.format(time.time()-btime)
print '- Starting extract .xml'
btime=time.time()
# regular info.
for root in patentRoot.findall('patent-application-publication'):
self.__init__()
for r in root.findall('subdoc-bibliographic-information'):
for di in r.findall('document-id'):
self.pubCountry=''
self.pubNo=self.__returnElementText(di.find('doc-number'))
self.kind=self.__returnElementText(di.find('kind-code'))
self.pubDate=self.__returnElementText(di.find('document-date'))
self.appType=self.__returnElementText(r.find('publication-filing-type'))
for ar in r.findall('domestic-filing-data'):
self.appCountry=''
self.appNo=self.__returnElementText(ar.find('application-number'))
self.appDate=self.__returnElementText(ar.find('filing-date'))
self.seriesCode=self.__returnElementText(ar.find('application-number-series-code'))
for cls in r.findall('technical-information'):
for ic in cls.findall('classification-ipc'):
self.position=1
for icm in ic.findall('classification-ipc-primary'):
self.iClassCls=self.__returnElementText(icm.find('ipc'))
self.sql_intclass.append([self.pubNo,self.position,self.iClassSec,self.iClassCls,self.iClassSub,self.iClassMgr,self.iClassSgr])
self.position+=1
for ics in ic.findall('classification-ipc-secondary'):
self.iClassCls=self.__returnElementText(ics)
self.sql_intclass.append([self.pubNo,self.position,self.iClassSec,self.iClassCls,self.iClassSub,self.iClassMgr,self.iClassSgr])
self.position+=1
for nc in cls.findall('classification-us'):
self.position=1
for ncp in nc.findall('classification-us-primary'):
for uspc in ncp.findall('uspc'):
self.nClassCountry=''
self.nClassInfo=''
self.nClassMain=self.__returnElementText(uspc.find('class'))
self.nSubclass=self.__returnElementText(uspc.find('subclass'))
self.sql_usclass.append([self.pubNo,self.position,self.__returnStr(self.nClassMain),self.__returnStr(self.nSubclass)])
self.position+=1
for ncs in nc.findall('classification-us-secondary'):
for uspc in ncs.findall('uspc'):
self.nClassMain=self.__returnElementText(uspc.find('class'))
self.nSubclass=self.__returnElementText(uspc.find('subclass'))
self.sql_usclass.append([self.pubNo,self.position,self.__returnStr(self.nClassMain),self.__returnStr(self.nSubclass)])
self.position+=1
for ti in cls.findall('title-of-invention'):
self.title=self.__returnElementText(ti)
for iv in r.findall('inventors'):
self.position=1
for fiv in iv.findall('first-named-inventor'):
for n in fiv.findall('name'):
self.itFirstName=self.__returnElementText(n.find('given-name'))
self.itLastName=self.__returnElementText(n.find('family-name'))
for re in fiv.findall('residence'):
if(re.find('residence-us')):
reu=re.find('residence-us')
self.itCity=self.__returnElementText(reu.find('city'))
self.itState=self.__returnElementText(reu.find('state'))
self.itCountry=self.__returnElementText(reu.find('country-code'))
elif(re.find('residence-non-us')):
reu=re.find('residence-non-us')
self.itCity=self.__returnElementText(reu.find('city'))
self.itState=self.__returnElementText(reu.find('state'))
self.itCountry=self.__returnElementText(reu.find('country-code'))
self.sql_inventor.append([self.pubNo,self.position,self.__returnStr(self.itFirstName),self.__returnStr(self.itLastName),self.__returnStr(self.itCity),self.__returnStr(self.itState),self.__returnStr(self.itCountry),self.__returnStr(self.itNationality),self.__returnStr(self.itResidence)])
self.position+=1
for ivs in iv.findall('inventor'):
for n in ivs.findall('name'):
self.itFirstName=self.__returnElementText(n.find('given-name'))
self.itLastName=self.__returnElementText(n.find('family-name'))
for re in ivs.findall('residence'):
if(re.find('residence-us')):
reu=re.find('residence-us')
self.itCity=self.__returnElementText(reu.find('city'))
self.itState=self.__returnElementText(reu.find('state'))
self.itCountry=self.__returnElementText(reu.find('country-code'))
elif(re.find('residence-non-us')):
reu=re.find('residence-non-us')
self.itCity=self.__returnElementText(reu.find('city'))
self.itState=self.__returnElementText(reu.find('state'))
self.itCountry=self.__returnElementText(reu.find('country-code'))
self.sql_inventor.append([self.pubNo,self.position,self.__returnStr(self.itFirstName),self.__returnStr(self.itLastName),self.__returnStr(self.itCity),self.__returnStr(self.itState),self.__returnStr(self.itCountry),self.__returnStr(self.itNationality),self.__returnStr(self.itResidence)])
self.position+=1
for assn in r.findall('assignee'):
self.position=1
for on in assn.findall('organization-name'):
self.asnOrgName=self.__returnElementText(on)
for ad in assn.findall('address'):
self.asnCity=self.__returnElementText(ad.find('city'))
self.asnState=self.__returnElementText(ad.find('state'))
self.asnRole=self.__returnElementText(assn.find('assignee-type'))
self.sql_assignee.append([self.pubNo,self.position,self.__returnStr(self.asnOrgName),self.asnRole,self.__returnStr(self.asnCity),self.__returnStr(self.asnState),self.__returnStr(self.asnCountry)])
self.position+=1
for agn in r.findall('correspondence-address'):
self.position=1
self.atnOrgName=self.__returnElementText(agn.find('name-1'))
for ads in agn.findall('address'):
self.atnLastName=''
self.atnFirstName=''
self.atnCountry=self.__returnElementText(ads.find('country'))
self.sql_agent.append([self.pubNo,self.position,self.__returnStr(self.atnOrgName),self.__returnStr(self.atnLastName),self.__returnStr(self.atnFirstName),self.__returnStr(self.atnCountry)])
self.position+=1
for abs in root.findall('subdoc-abstract'):
self.abstract=self.__returnElementText(abs)
# ****** SQL Variables ********
self.sql_publication.append([self.pubNo,self.__returnStr(self.title),self.__returnDate(self.pubDate),
self.kind,self.seriesCode,self.__returnStr(self.abstract),self.__returnInt(self.claimsNum),
self.__returnInt(self.drawingsNum),self.__returnInt(self.figuresNum),self.__returnStr(self.appNo),
self.__returnStr(self.claims),
self.__returnDate(self.appDate),self.appType])
print '===== PUBLICATION ====='
print len(self.sql_publication)
print '===== EXAMINER ====='
print len(self.sql_examiner)
print '===== ASSIGNEE ====='
print len(self.sql_assignee)
print '===== AGENT ====='
print len(self.sql_agent)
print '===== INVENTOR ====='
print len(self.sql_inventor)
print '===== USCLASS ====='
print len(self.sql_usclass)
print '===== INTCLASS ====='
print len(self.sql_intclass)
print '===== PUBCIT ====='
print len(self.sql_pubcit)
print '===== GRACIT ====='
print len(self.sql_gracit)
print '===== FORPATCIT ====='
print len(self.sql_forpatcit)
print '===== NONPATCIT ====='
print len(self.sql_nonpatcit)
print '[Extracted .xml. Time:{0}]'.format(time.time()-btime)
def downloadZIP(self):
print '- Starting download ZIP files.'
st=time.time()
sp=SourceParser.SourceParser()
sp.getALLFormats()
ls_xml4=sp.links_P_XML4
ls_xml1=sp.links_P_XML1
for dLink in ls_xml4:
exist_path=(os.getcwd()+'/ZIP_P/XML4/'+os.path.basename(dLink)).replace('\\','/')
if(not os.path.exists(exist_path)):
urllib.urlretrieve(dLink,exist_path)
urllib.urlcleanup()
for dLink in ls_xml1:
exist_path=(os.getcwd()+'/ZIP_P/XML1/'+os.path.basename(dLink)).replace('\\','/')
if(not os.path.exists(exist_path)):
urllib.urlretrieve(dLink,exist_path)
urllib.urlcleanup()
print '[Downloaded ZIP files. Cost: {0}]'.format(time.time()-st)
def writeCSV(self):
print '- Starting write .csv'
import csv
st=time.time()
self.f_publication=open(self.csvPath_publication,'ab')
self.f_examiner=open(self.csvPath_examiner,'ab')
self.f_agent=open(self.csvPath_agent,'ab')
self.f_assignee=open(self.csvPath_assignee,'ab')
self.f_inventor=open(self.csvPath_inventor,'ab')
self.f_pubcit=open(self.csvPath_pubcit,'ab')
self.f_gracit=open(self.csvPath_gracit,'ab')
self.f_forpatcit=open(self.csvPath_forpatcit,'ab')
self.f_nonpatcit=open(self.csvPath_nonpatcit,'ab')
self.f_usclass=open(self.csvPath_usclass,'ab')
self.f_intclass=open(self.csvPath_intclass,'ab')
w_publication=csv.writer(self.f_publication,delimiter='\t',lineterminator='\n')
w_publication.writerows(self.sql_publication)
w_examiner=csv.writer(self.f_examiner,delimiter='\t',lineterminator='\n')
w_examiner.writerows(self.sql_examiner)
w_agent=csv.writer(self.f_agent,delimiter='\t',lineterminator='\n')
w_agent.writerows(self.sql_agent)
w_assignee=csv.writer(self.f_assignee,delimiter='\t',lineterminator='\n')
w_assignee.writerows(self.sql_assignee)
w_inventor=csv.writer(self.f_inventor,delimiter='\t',lineterminator='\n')
w_inventor.writerows(self.sql_inventor)
w_pubcit=csv.writer(self.f_pubcit,delimiter='\t',lineterminator='\n')
w_pubcit.writerows(self.sql_pubcit)
w_gracit=csv.writer(self.f_gracit,delimiter='\t',lineterminator='\n')
w_gracit.writerows(self.sql_gracit)
w_forpatcit=csv.writer(self.f_forpatcit,delimiter='\t',lineterminator='\n')
w_forpatcit.writerows(self.sql_forpatcit)
w_nonpatcit=csv.writer(self.f_nonpatcit,delimiter='\t',lineterminator='\n')
w_nonpatcit.writerows(self.sql_nonpatcit)
w_usclass=csv.writer(self.f_usclass,delimiter='\t',lineterminator='\n')
w_usclass.writerows(self.sql_usclass)
w_intclass=csv.writer(self.f_intclass,delimiter='\t',lineterminator='\n')
w_intclass.writerows(self.sql_intclass)
self.f_publication.close()
self.f_examiner.close()
self.f_agent.close()
self.f_assignee.close()
self.f_inventor.close()
self.f_pubcit.close()
self.f_gracit.close()
self.f_forpatcit.close()
self.f_nonpatcit.close()
self.f_usclass.close()
self.f_intclass.close()
self.__ResetSQLVariables()
print '[Written CSV files. Cost:{0}]'.format(time.time()-st)
# wirete csv files_update
def writeCSV_update(self,suffix):
print '- Starting write .csv_update'
import csv
st=time.time()
self.f_publication=open(self.csvPath_publication+suffix,'ab')
self.f_examiner=open(self.csvPath_examiner+suffix,'ab')
self.f_agent=open(self.csvPath_agent+suffix,'ab')
self.f_assignee=open(self.csvPath_assignee+suffix,'ab')
self.f_inventor=open(self.csvPath_inventor+suffix,'ab')
self.f_pubcit=open(self.csvPath_pubcit+suffix,'ab')
self.f_gracit=open(self.csvPath_gracit+suffix,'ab')
self.f_forpatcit=open(self.csvPath_forpatcit+suffix,'ab')
self.f_nonpatcit=open(self.csvPath_nonpatcit+suffix,'ab')
self.f_usclass=open(self.csvPath_usclass+suffix,'ab')
self.f_intclass=open(self.csvPath_intclass+suffix,'ab')
w_publication=csv.writer(self.f_publication,delimiter='\t',lineterminator='\n')
w_publication.writerows(self.sql_publication)
w_examiner=csv.writer(self.f_examiner,delimiter='\t',lineterminator='\n')
w_examiner.writerows(self.sql_examiner)
w_agent=csv.writer(self.f_agent,delimiter='\t',lineterminator='\n')
w_agent.writerows(self.sql_agent)
w_assignee=csv.writer(self.f_assignee,delimiter='\t',lineterminator='\n')
w_assignee.writerows(self.sql_assignee)
w_inventor=csv.writer(self.f_inventor,delimiter='\t',lineterminator='\n')
w_inventor.writerows(self.sql_inventor)
w_pubcit=csv.writer(self.f_pubcit,delimiter='\t',lineterminator='\n')
w_pubcit.writerows(self.sql_pubcit)
w_gracit=csv.writer(self.f_gracit,delimiter='\t',lineterminator='\n')
w_gracit.writerows(self.sql_gracit)
w_forpatcit=csv.writer(self.f_forpatcit,delimiter='\t',lineterminator='\n')
w_forpatcit.writerows(self.sql_forpatcit)
w_nonpatcit=csv.writer(self.f_nonpatcit,delimiter='\t',lineterminator='\n')
w_nonpatcit.writerows(self.sql_nonpatcit)
w_usclass=csv.writer(self.f_usclass,delimiter='\t',lineterminator='\n')
w_usclass.writerows(self.sql_usclass)
w_intclass=csv.writer(self.f_intclass,delimiter='\t',lineterminator='\n')
w_intclass.writerows(self.sql_intclass)
self.f_publication.close()
self.f_examiner.close()
self.f_agent.close()
self.f_assignee.close()
self.f_inventor.close()
self.f_pubcit.close()
self.f_gracit.close()
self.f_forpatcit.close()
self.f_nonpatcit.close()
self.f_usclass.close()
self.f_intclass.close()
self.__ResetSQLVariables()
print '[Written CSV files_update. Cost:{0}]'.format(time.time()-st)
def loadCSV(self):
print '- Starting load CSV files.'
st=time.time()
self.processor=MySQLProcessor.MySQLProcess()
self.processor.connect()
print self.processor.load("""SET foreign_key_checks = 0;""")
print '***** PUBLICATION *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.PUBLICATIONS FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_publication.replace('\\','/')))
print '***** EXAMINER *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.EXAMINER_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_examiner.replace('\\','/')))
print '***** AGENT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.AGENT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_agent.replace('\\','/')))
print '***** ASSIGNEE *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.ASSIGNEE_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_assignee.replace('\\','/')))
print '***** INVENTOR *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.INVENTOR_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_inventor.replace('\\','/')))
print '***** PUBCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.PUBCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_pubcit.replace('\\','/')))
print '***** GRACIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.GRACIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_gracit.replace('\\','/')))
print '***** FORPATCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.FORPATCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_forpatcit.replace('\\','/')))
print '***** NONPATCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.NONPATCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_nonpatcit.replace('\\','/')))
print '***** USCLASS *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.USCLASS_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_usclass.replace('\\','/')))
print '***** INTCLASS *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.INTCLASS_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_intclass.replace('\\','/')))
print self.processor.load("""SET foreign_key_checks = 1;""")
self.processor.close()
print '[Loaded .csv. Time:{0}]'.format(time.time()-st)
def loadCSV_update(self,suffix):
print '- Starting load CSV files_update.'
st=time.time()
self.processor=MySQLProcessor.MySQLProcess()
self.processor.connect()
print self.processor.load("""SET foreign_key_checks = 0;""")
print '***** PUBLICATION *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.PUBLICATIONS FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_publication.replace('\\','/')+suffix))
print '***** EXAMINER *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.EXAMINER_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_examiner.replace('\\','/')+suffix))
print '***** AGENT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.AGENT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_agent.replace('\\','/')+suffix))
print '***** ASSIGNEE *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.ASSIGNEE_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_assignee.replace('\\','/')+suffix))
print '***** INVENTOR *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.INVENTOR_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_inventor.replace('\\','/')+suffix))
print '***** PUBCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.PUBCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_pubcit.replace('\\','/')+suffix))
print '***** GRACIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.GRACIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_gracit.replace('\\','/')+suffix))
print '***** FORPATCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.FORPATCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_forpatcit.replace('\\','/')+suffix))
print '***** NONPATCIT *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.NONPATCIT_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_nonpatcit.replace('\\','/')+suffix))
print '***** USCLASS *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.USCLASS_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_usclass.replace('\\','/')+suffix))
print '***** INTCLASS *****'
print self.processor.load("""LOAD DATA LOCAL INFILE '{filePath}'
IGNORE INTO TABLE uspto_patents.INTCLASS_P FIELDS TERMINATED BY '\\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\\n';
""".format(filePath=self.csvPath_intclass.replace('\\','/')+suffix))
print self.processor.load("""SET foreign_key_checks = 1;""")
self.processor.close()
print '[Loaded .csv_update. Time:{0}]'.format(time.time()-st)
# main function for multiprocessing
def mainProcess(fileList,formatStr):
"""
Parse all the ZIP files into CSV
"""
print '- Process {0} is starting to work!'.format(os.getpid())
pst=time.time()
for filePath in fileList:
st=time.time()
fileName=os.path.basename(filePath)
log=LogProcessor.LogProcess()
if(formatStr=='xml4'):
try:
sp=SourceParser.SourceParser()
xmlStr=sp.getXML4Content_DPL(filePath)
p=PublicationsParser()
p.extractXML4(xmlStr)
p.writeCSV()
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML4'+'\t'+'Processed')
except:
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML4'+'\t'+'Failed')
continue
elif(formatStr=='xml1'):
try:
sp=SourceParser.SourceParser()
xmlStr=sp.getXML1Content_DPL(filePath)
p=PublicationsParser()
p.extractXML1(xmlStr)
p.writeCSV()
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML1'+'\t'+'Processed')
except:
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML1'+'\t'+'Failed')
continue
print '[Finishing processing one .zip package! Time consuming:{0}]'.format(time.time()-st)
print '[Process {0} is finished. Cost Time:{1}]'.format(os.getpid(),time.time()-pst)
def partTen(bList):
n=10
m=len(bList)
sList=[bList[0:m/n],bList[m/n:2*m/n],bList[2*m/n:3*m/n],bList[3*m/n:4*m/n],bList[4*m/n:5*m/n],bList[5*m/n:6*m/n],bList[6*m/n:7*m/n],bList[7*m/n:8*m/n],bList[8*m/n:9*m/n],bList[9*m/n:10*m/n]]
return sList
# main function for autoUpdater
def update(fileNameList):
"""
parse all the new xml4 zips into csv
and then load the csv files into the database
"""
print '- Process {0} is starting to work!'.format(os.getpid())
st_process=time.time()
#download new zips
st_download=time.time()
p=PublicationsParser()
p.downloadZIP()
print '[Downloaded new zips] Cost:{0}'.format(time.time()-st_download)
#parse and generate csv files
for fileName in fileNameList:
st_parse=time.time()
filePath=(os.getcwd()+'/ZIP_P/XML4/'+fileName).replace('\\','/')
log=LogProcessor.LogProcess()
try:
sp=SourceParser.SourceParser()
xmlStr=sp.getXML4Content_DPL(filePath)
p=PublicationsParser()
p.extractXML4(xmlStr)
p.writeCSV_update('_update')
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML4'+'\t'+'Processed')
except:
log.write(log.logPath_P,fileName+'\t'+filePath+'\t'+'XML4'+'\t'+'Failed')
continue
print '[Finishing processing one .zip package! Time consuming:{0}]'.format(time.time()-st_parse)
st_load=time.time()
p=PublicationsParser()
p.loadCSV_update('_update')
print '[Loaded CSV files_update. Cost:{0}]'.format(time.time()-st_load)
print '[Process {0} is finished. Cost Time:{1}]'.format(os.getpid(),time.time()-st_process)
if __name__=="__main__":
po=PublicationsParser()
#download
st=time.time()
po.downloadZIP()
print '== Downloading Cost: {0} =='.format(time.time()-st)
#parse
st=time.time()
sp=SourceParser.SourceParser()
sp.getALLFilePaths()
ls_xml4=sp.files_P_XML4 #396
ls_xml1=sp.files_P_XML1 #199
# *** xml1
processes=[]
ls_xml1_p=partTen(ls_xml1)
for fileList in ls_xml1_p:
processes.append(multiprocessing.Process(target=mainProcess,args=(fileList,'xml1')))
for p in processes:
p.start()
for p in processes:
p.join()
print '[Finished all xml1 files]'
# *** xml4
processes=[]
ls_xml4_p=partTen(ls_xml4)
for fileList in ls_xml4_p:
processes.append(multiprocessing.Process(target=mainProcess,args=(fileList,'xml4')))
for p in processes:
p.start()
for p in processes:
p.join()
print '[Finished all xml4 files]'
print ('== Parseing Cost:{0} =='.format(time.time()-st))
#load
st=time.time()
po.loadCSV()
print '== Loading Cost:{0} =='.format(time.time()-st)