diff --git a/docs/dockers_sentieon_alignment.md b/docs/dockers_sentieon_alignment.md index 5c1f2bc..61efecc 100644 --- a/docs/dockers_sentieon_alignment.md +++ b/docs/dockers_sentieon_alignment.md @@ -9,7 +9,7 @@ cutadapt.cwl|quay.io/biocontainers/cutadapt:4.6--py310h4b81fae_1 expression_preparerg.cwl|None gatk_indexfeaturefile.cwl|pgc-images.sbgenomics.com/d3b-bixu/gatk:4.1.7.0R picard_collectgvcfcallingmetrics.cwl|pgc-images.sbgenomics.com/d3b-bixu/picard:2.18.9R -samtools_head.cwl|dmiller15/samtools:1.15 +samtools_head.cwl|staphb/samtools:1.15 samtools_idxstats_xy_ratio.cwl|pgc-images.sbgenomics.com/d3b-bixu/samtools:1.9 samtools_split.cwl|pgc-images.sbgenomics.com/d3b-bixu/samtools:1.9 sentieon_HsMetricAlgo.cwl|pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi diff --git a/tools/samtools_head.cwl b/tools/samtools_head.cwl index 033468c..83deafd 100644 --- a/tools/samtools_head.cwl +++ b/tools/samtools_head.cwl @@ -19,7 +19,7 @@ doc: |- requirements: - class: ShellCommandRequirement - class: DockerRequirement - dockerPull: 'dmiller15/samtools:1.15' + dockerPull: 'staphb/samtools:1.15' - class: InlineJavascriptRequirement baseCommand: [samtools, head] arguments: diff --git a/workflows/kfdrc_alignment_wf.cwl b/workflows/kfdrc_alignment_wf.cwl index f90a7ee..19bf850 100644 --- a/workflows/kfdrc_alignment_wf.cwl +++ b/workflows/kfdrc_alignment_wf.cwl @@ -761,5 +761,5 @@ hints: - WXS - GVCF "sbg:links": -- id: 'https://github.com/kids-first/kf-alignment-workflow/releases/tag/v2.11.0' +- id: 'https://github.com/kids-first/kf-alignment-workflow/releases/tag/v2.11.1' label: github-release diff --git a/workflows/kfdrc_sentieon_alignment_wf.cwl b/workflows/kfdrc_sentieon_alignment_wf.cwl index 13fd530..b854819 100644 --- a/workflows/kfdrc_sentieon_alignment_wf.cwl +++ b/workflows/kfdrc_sentieon_alignment_wf.cwl @@ -466,5 +466,5 @@ hints: - GVCF - SENTIEON "sbg:links": -- id: 'https://github.com/kids-first/kf-alignment-workflow/releases/tag/v2.11.0' +- id: 'https://github.com/kids-first/kf-alignment-workflow/releases/tag/v2.11.1' label: github-release