DESCRIPTION

Package: cacoa
Title: Case-Control Analysis Tools for Single-Cell RNA-Seq
Version: 0.5.0
Authors@R: c(person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = c("aut", "cre")), person("Viktor","Petukhov", email="viktor.s.petuhov@ya.ru", role="aut"))
Description: Case-Control Analysis tools for single-cell RNA-seq.
License: GPL-3
Encoding: UTF-8
Depends:
    R (>= 3.5.0), Matrix
biocViews:
Imports:
    ape,
    cowplot,
    dplyr,
    ggplot2,
    ggrepel,
    grDevices,
    igraph,
    ks,
    magrittr,
    MASS,
    matrixTests,
    methods,
    plyr,
    R6,
    reshape2,
    rlang,
    sccore (>= 1.0.3),
    tibble,
    tidyr,
    tidytree
Suggests:
    abind,
    BiocParallel,
    candisc,
    cluster,
    clusterProfiler (>= 3.0.0),
    coda.base,
    conos,
    DESeq2,
    DOSE,
    e1071,
    edgeR,
    EnhancedVolcano,
    enrichplot,
    entropy,
    fabia,
    ggdendro,
    ggrastr (>= 0.1.7),
    ggtree,
    GOfuncR,
    graph,
    irlba,
    jsonlite,
    leidenAlg,
    limma,
    matrixStats (>= 0.60.1),
    N2R,
    pagoda2,
    psych,
    purrr,
    quadprog,
    RColorBrewer,
    Rgraphviz,
    Rtsne,
    scales,
    scran,
    Seurat,
    SummarizedExperiment,
    testthat (>= 3.1.0),
    viridis
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
LinkingTo: Rcpp, RcppArmadillo, RcppEigen, RcppProgress, sccore
NeedsCompilation: yes
SystemRequirements: C++11
URL: https://github.com/kharchenkolab/cacoa
BugReports: https://github.com/kharchenkolab/cacoa/issues
Author: Peter Kharchenko [aut, cre], Viktor Petukhov [aut]
Maintainer: Peter Kharchenko <peter_kharchenko@hms.harvard.edu>
LazyData: true