diff --git a/R/basilisk.R b/R/basilisk.R
index a28649f..aa5a9ed 100644
--- a/R/basilisk.R
+++ b/R/basilisk.R
@@ -579,177 +579,230 @@
 ## Linux ----
 
 .scvelo.dependencies.Linux <- list(
-  channels = c("anaconda", "conda-forge"),
+  channels = c("conda-forge"),
   packages = c(
     '_libgcc_mutex==0.1',
-    '_openmp_mutex==5.1',
+    '_openmp_mutex==4.5',
     'absl-py==2.1.0',
     'anndata==0.10.9',
+    'aom==3.9.1',
     'array-api-compat==1.8',
-    'asttokens==2.0.5',
-    'blas==1.0',
-    'bottleneck==1.3.7',
-    'brotli==1.0.9',
-    'brotli-bin==1.0.9',
-    'brotli-python==1.0.9',
+    'asttokens==2.4.1',
+    'blosc==1.21.6',
+    'brotli==1.1.0',
+    'brotli-bin==1.1.0',
+    'brotli-python==1.1.0',
     'bzip2==1.0.8',
-    'c-ares==1.19.1',
-    'ca-certificates==2024.7.2',
+    'c-ares==1.33.1',
+    'ca-certificates==2024.8.30',
+    'cached-property==1.5.2',
+    'cached_property==1.5.2',
     'certifi==2024.8.30',
+    'cffi==1.17.1',
     'charset-normalizer==3.3.2',
-    'chex==0.1.5',
+    'chex==0.1.86',
     'click==8.1.7',
-    'comm==0.2.1',
+    'colorama==0.4.6',
+    'comm==0.2.2',
     'contextlib2==21.6.0',
-    'contourpy==1.2.0',
-    'cycler==0.11.0',
+    'contourpy==1.3.0',
+    'cycler==0.12.1',
+    'dav1d==1.2.1',
     'decorator==5.1.1',
-    'dm-tree==0.1.7',
     'docrep==0.3.2',
     'et_xmlfile==1.1.0',
-    'exceptiongroup==1.2.0',
-    'executing==0.8.3',
-    'filelock==3.13.1',
-    'flax==0.6.1',
-    'fonttools==4.51.0',
+    'etils==1.9.4',
+    'exceptiongroup==1.2.2',
+    'executing==2.1.0',
+    'filelock==3.16.1',
+    'flax==0.9.0',
+    'fonttools==4.54.1',
     'freetype==2.12.1',
-    'fsspec==2024.6.1',
+    'fsspec==2024.9.0',
     'get-annotations==0.1.2',
-    'gmp==6.2.1',
-    'gmpy2==2.1.2',
+    'gmp==6.3.0',
+    'gmpy2==2.1.5',
+    'h2==4.1.0',
     'h5py==3.11.0',
-    'hdf5==1.12.1',
-    'idna==3.7',
-    'ipython==8.25.0',
+    'hdf5==1.14.3',
+    'hpack==4.0.0',
+    'hyperframe==6.0.1',
+    'icu==75.1',
+    'idna==3.10',
+    'importlib-metadata==8.5.0',
+    'importlib_metadata==8.5.0',
+    'importlib_resources==6.4.5',
+    'ipython==8.27.0',
     'ipywidgets==8.1.2',
-    'jax==0.3.25',
-    'jaxlib==0.3.25',
+    'jax==0.4.27',
+    'jaxlib==0.4.23',
     'jedi==0.19.1',
     'jinja2==3.1.4',
     'joblib==1.4.2',
-    'jpeg==9e',
-    'jupyterlab_widgets==3.0.10',
-    'kiwisolver==1.4.4',
-    'krb5==1.20.1',
-    'lcms2==2.12',
-    'ld_impl_linux-64==2.38',
+    'jupyterlab_widgets==3.0.13',
+    'keyutils==1.6.1',
+    'kiwisolver==1.4.7',
+    'krb5==1.21.3',
+    'lcms2==2.15',
+    'ld_impl_linux-64==2.43',
     'legacy-api-wrap==1.4',
-    'lerc==3.0',
-    'libbrotlicommon==1.0.9',
-    'libbrotlidec==1.0.9',
-    'libbrotlienc==1.0.9',
-    'libcurl==7.88.1',
-    'libdeflate==1.17',
-    'libedit==3.1.20230828',
+    'lerc==4.0.0',
+    'libabseil==20230802.1',
+    'libaec==1.1.3',
+    'libavif16==1.1.1',
+    'libblas==3.9.0',
+    'libbrotlicommon==1.1.0',
+    'libbrotlidec==1.1.0',
+    'libbrotlienc==1.1.0',
+    'libcblas==3.9.0',
+    'libcurl==8.10.1',
+    'libdeflate==1.18',
+    'libedit==3.1.20191231',
     'libev==4.33',
-    'libffi==3.4.4',
-    'libgcc-ng==11.2.0',
-    'libgfortran-ng==11.2.0',
-    'libgfortran5==11.2.0',
-    'libgomp==11.2.0',
+    'libexpat==2.6.3',
+    'libffi==3.4.2',
+    'libgcc==14.1.0',
+    'libgcc-ng==14.1.0',
+    'libgfortran==14.1.0',
+    'libgfortran-ng==14.1.0',
+    'libgfortran5==14.1.0',
+    'libgomp==14.1.0',
+    'libgrpc==1.58.2',
+    'libhwloc==2.11.1',
+    'libiconv==1.17',
+    'libjpeg-turbo==2.1.5.1',
+    'liblapack==3.9.0',
     'libllvm14==14.0.6',
-    'libnghttp2==1.57.0',
-    'libopenblas==0.3.21',
-    'libpng==1.6.39',
-    'libprotobuf==3.20.3',
+    'libnghttp2==1.58.0',
+    'libnsl==2.0.1',
+    'libopenblas==0.3.27',
+    'libpng==1.6.44',
+    'libprotobuf==4.24.3',
+    'libre2-11==2023.09.01',
+    'libsqlite==3.46.1',
     'libssh2==1.11.0',
-    'libstdcxx-ng==11.2.0',
+    'libstdcxx==14.1.0',
+    'libstdcxx-ng==14.1.0',
     'libtiff==4.5.1',
-    'libuuid==1.41.5',
-    'libwebp-base==1.3.2',
-    'lightning-utilities==0.9.0',
+    'libuuid==2.38.1',
+    'libuv==1.49.0',
+    'libwebp-base==1.4.0',
+    'libxcb==1.15',
+    'libxcrypt==4.4.36',
+    'libxml2==2.12.7',
+    'libzlib==1.3.1',
+    'lightning==2.3.3',
+    'lightning-utilities==0.11.7',
     'llvmlite==0.43.0',
     'loompy==3.0.6',
     'lz4-c==1.9.4',
-    'markdown-it-py==2.2.0',
-    'markupsafe==2.1.3',
+    'markdown-it-py==3.0.0',
+    'markupsafe==2.1.5',
     'matplotlib-base==3.9.2',
-    'matplotlib-inline==0.1.6',
-    'mdurl==0.1.0',
+    'matplotlib-inline==0.1.7',
+    'mdurl==0.1.2',
     'ml-collections==0.1.1',
-    'mpc==1.1.0',
-    'mpfr==4.0.2',
+    'ml_dtypes==0.5.0',
+    'mpc==1.3.1',
+    'mpfr==4.2.1',
     'mpmath==1.3.0',
-    'msgpack-python==1.0.3',
+    'msgpack-python==1.1.0',
     'mudata==0.3.1',
     'multipledispatch==0.6.0',
-    'natsort==7.1.1',
-    'ncurses==6.4',
+    'munkres==1.1.4',
+    'natsort==8.4.0',
+    'ncurses==6.5',
+    'nest-asyncio==1.6.0',
     'networkx==3.3',
+    'nomkl==1.0',
     'numba==0.60.0',
-    'numexpr==2.8.7',
-    'numpy==1.23.5',
-    'numpy-base==1.23.5',
+    'numpy==1.26.4',
     'numpy_groupies==0.11.2',
-    'numpyro==0.13.2',
-    'openjpeg==2.5.2',
+    'numpyro==0.15.3',
+    'openjpeg==2.5.0',
     'openpyxl==3.1.5',
-    'openssl==3.0.15',
+    'openssl==3.3.2',
+    'opt-einsum==3.3.0',
     'opt_einsum==3.3.0',
-    'optax==0.1.4',
+    'optax==0.2.2',
+    'orbax-checkpoint==0.4.4',
     'packaging==24.1',
-    'pandas==2.2.2',
-    'parso==0.8.3',
+    'pandas==2.2.3',
+    'parso==0.8.4',
     'patsy==0.5.6',
-    'pexpect==4.8.0',
-    'pillow==10.4.0',
+    'pexpect==4.9.0',
+    'pickleshare==0.7.5',
+    'pillow==10.0.0',
     'pip==24.2',
-    'platformdirs==3.10.0',
-    'pooch==1.7.0',
-    'prompt-toolkit==3.0.43',
-    'prompt_toolkit==3.0.43',
+    'prompt-toolkit==3.0.48',
+    'protobuf==4.24.3',
+    'pthread-stubs==0.4',
     'ptyprocess==0.7.0',
-    'pure_eval==0.2.2',
-    'pygments==2.15.1',
-    'pynndescent==0.5.10',
-    'pyparsing==3.1.2',
+    'pure_eval==0.2.3',
+    'pybind11-abi==4',
+    'pycparser==2.22',
+    'pygments==2.18.0',
+    'pynndescent==0.5.13',
+    'pyparsing==3.1.4',
     'pyro-api==0.1.2',
     'pyro-ppl==1.9.1',
     'pysocks==1.7.1',
-    'python==3.11.9',
-    'python-dateutil==2.9.0post0',
-    'python-tzdata==2023.3',
-    'pytorch==2.3.0',
-    'pytorch-lightning==1.9.5',
+    'python==3.11.10',
+    'python-dateutil==2.9.0',
+    'python-tzdata==2024.2',
+    'python_abi==3.11',
+    'pytorch==2.0.0',
+    'pytorch-lightning==2.3.3',
     'pytz==2024.1',
-    'pyyaml==6.0.1',
+    'pyyaml==6.0.2',
+    'qhull==2020.2',
+    'rav1e==0.6.6',
+    're2==2023.09.01',
     'readline==8.2',
     'requests==2.32.3',
-    'rich==13.7.1',
-    'scanpy==1.10.2',
+    'rich==13.8.1',
+    'scanpy==1.10.3',
     'scikit-learn==1.1.3',
-    'scipy==1.10.0',
+    'scipy==1.14.1',
     'scvelo==0.3.2',
-    'scvi-tools==0.20.3',
+    'scvi-tools==1.1.6.post1',
     'seaborn==0.13.2',
+    'seaborn-base==0.13.2',
     'session-info==1.0.0',
-    'setuptools==72.1.0',
+    'setuptools==75.1.0',
     'six==1.16.0',
-    'sqlite==3.45.3',
-    'stack_data==0.2.0',
-    'statsmodels==0.14.2',
+    'sleef==3.7',
+    'snappy==1.2.1',
+    'sparse==0.15.4',
+    'stack_data==0.6.2',
+    'statsmodels==0.14.3',
     'stdlib-list==0.10.0',
+    'svt-av1==2.2.1',
     'sympy==1.13.2',
-    'tbb==2021.8.0',
+    'tbb==2021.13.0',
+    'tensorstore==0.1.44',
     'threadpoolctl==3.5.0',
-    'tk==8.6.14',
-    'toolz==0.12.0',
-    'torchmetrics==1.4.0.post0',
+    'tk==8.6.13',
+    'toolz==0.12.1',
+    'torchmetrics==1.4.2',
     'tqdm==4.66.5',
     'traitlets==5.14.3',
-    'typing-extensions==4.11.0',
-    'typing_extensions==4.11.0',
+    'typing-extensions==4.12.2',
+    'typing_extensions==4.12.2',
     'tzdata==2024a',
-    'umap-learn==0.5.4',
-    'unicodedata2==15.1.0',
-    'urllib3==2.2.2',
-    'wcwidth==0.2.5',
-    'wheel==0.43.0',
-    'widgetsnbextension==4.0.10',
-    'xz==5.4.6',
+    'umap-learn==0.5.6',
+    'urllib3==2.2.3',
+    'wcwidth==0.2.13',
+    'wheel==0.44.0',
+    'widgetsnbextension==4.0.13',
+    'xarray==2024.9.0',
+    'xorg-libxau==1.0.11',
+    'xorg-libxdmcp==1.1.3',
+    'xz==5.2.6',
     'yaml==0.2.5',
-    'zlib==1.2.13',
-    'zstd==1.5.5'
+    'zipp==3.20.2',
+    'zstandard==0.23.0',
+    'zstd==1.5.6'
   )
 )
 
diff --git a/inst/envs/Linux_x86_64.yaml b/inst/envs/Linux_x86_64.yaml
index de51350..1db192c 100644
--- a/inst/envs/Linux_x86_64.yaml
+++ b/inst/envs/Linux_x86_64.yaml
@@ -1,78 +1,86 @@
-name: scvelo_032
+name: scvelo
 channels:
 - conda-forge
 dependencies:
 - _libgcc_mutex=0.1=conda_forge
 - _openmp_mutex=4.5=2_gnu
 - absl-py=2.1.0=pyhd8ed1ab_0
-- anndata=0.10.8=pyhd8ed1ab_0
+- anndata=0.10.9=pyhd8ed1ab_0
 - aom=3.9.1=hac33072_0
 - array-api-compat=1.8=pyhd8ed1ab_0
+- asttokens=2.4.1=pyhd8ed1ab_0
 - blosc=1.21.6=hef167b5_0
-- brotli=1.1.0=hd590300_1
-- brotli-bin=1.1.0=hd590300_1
-- brotli-python=1.1.0=py311hb755f60_1
+- brotli=1.1.0=hb9d3cd8_2
+- brotli-bin=1.1.0=hb9d3cd8_2
+- brotli-python=1.1.0=py311hfdbb021_2
 - bzip2=1.0.8=h4bc722e_7
 - c-ares=1.33.1=heb4867d_0
-- ca-certificates=2024.7.4=hbcca054_0
+- ca-certificates=2024.8.30=hbcca054_0
 - cached-property=1.5.2=hd8ed1ab_1
 - cached_property=1.5.2=pyha770c72_1
-- certifi=2024.7.4=pyhd8ed1ab_0
-- cffi=1.17.0=py311ha8e6434_0
+- certifi=2024.8.30=pyhd8ed1ab_0
+- cffi=1.17.1=py311hf29c0ef_0
 - charset-normalizer=3.3.2=pyhd8ed1ab_0
 - chex=0.1.86=pyhd8ed1ab_0
 - click=8.1.7=unix_pyh707e725_0
 - colorama=0.4.6=pyhd8ed1ab_0
+- comm=0.2.2=pyhd8ed1ab_0
 - contextlib2=21.6.0=pyhd8ed1ab_0
-- contourpy=1.2.1=py311h9547e67_0
+- contourpy=1.3.0=py311hd18a35c_2
 - cycler=0.12.1=pyhd8ed1ab_0
 - dav1d=1.2.1=hd590300_0
+- decorator=5.1.1=pyhd8ed1ab_0
 - docrep=0.3.2=pyh44b312d_0
 - et_xmlfile=1.1.0=pyhd8ed1ab_0
-- etils=1.9.2=pyhd8ed1ab_0
+- etils=1.9.4=pyhd8ed1ab_0
 - exceptiongroup=1.2.2=pyhd8ed1ab_0
-- filelock=3.15.4=pyhd8ed1ab_0
+- executing=2.1.0=pyhd8ed1ab_0
+- filelock=3.16.1=pyhd8ed1ab_0
 - flax=0.9.0=pyhd8ed1ab_0
-- fonttools=4.53.1=py311h61187de_0
+- fonttools=4.54.1=py311h9ecbd09_0
 - freetype=2.12.1=h267a509_2
-- fsspec=2024.6.1=pyhff2d567_0
+- fsspec=2024.9.0=pyhff2d567_0
 - get-annotations=0.1.2=pyhd8ed1ab_0
 - gmp=6.3.0=hac33072_2
-- gmpy2=2.1.5=py311hc4f1f91_1
+- gmpy2=2.1.5=py311h0f6cedb_2
 - h2=4.1.0=pyhd8ed1ab_0
 - h5py=3.11.0=nompi_py311h439e445_102
 - hdf5=1.14.3=nompi_hdf9ad27_105
 - hpack=4.0.0=pyh9f0ad1d_0
 - hyperframe=6.0.1=pyhd8ed1ab_0
 - icu=75.1=he02047a_0
-- idna=3.8=pyhd8ed1ab_0
-- importlib-metadata=8.4.0=pyha770c72_0
-- importlib_metadata=8.4.0=hd8ed1ab_0
-- importlib_resources=6.4.4=pyhd8ed1ab_0
-- jax=0.4.31=pyhd8ed1ab_0
-- jaxlib=0.4.31=cpu_py311hb2c720c_0
+- idna=3.10=pyhd8ed1ab_0
+- importlib-metadata=8.5.0=pyha770c72_0
+- importlib_metadata=8.5.0=hd8ed1ab_0
+- importlib_resources=6.4.5=pyhd8ed1ab_0
+- ipython=8.27.0=pyh707e725_0
+- ipywidgets=8.1.2=pyhd8ed1ab_1
+- jax=0.4.27=pyhd8ed1ab_0
+- jaxlib=0.4.23=cpu_py311h3b276bd_0
+- jedi=0.19.1=pyhd8ed1ab_0
 - jinja2=3.1.4=pyhd8ed1ab_0
 - joblib=1.4.2=pyhd8ed1ab_0
+- jupyterlab_widgets=3.0.13=pyhd8ed1ab_0
 - keyutils=1.6.1=h166bdaf_0
-- kiwisolver=1.4.5=py311h9547e67_1
+- kiwisolver=1.4.7=py311hd18a35c_0
 - krb5=1.21.3=h659f571_0
-- lcms2=2.16=hb7c19ff_0
-- ld_impl_linux-64=2.40=hf3520f5_7
+- lcms2=2.15=haa2dc70_1
+- ld_impl_linux-64=2.43=h712a8e2_1
 - legacy-api-wrap=1.4=pyhd8ed1ab_1
 - lerc=4.0.0=h27087fc_0
-- libabseil=20240116.2=cxx17_he02047a_1
+- libabseil=20230802.1=cxx17_h59595ed_0
 - libaec=1.1.3=h59595ed_0
 - libavif16=1.1.1=h104a339_1
-- libblas=3.9.0=23_linux64_openblas
-- libbrotlicommon=1.1.0=hd590300_1
-- libbrotlidec=1.1.0=hd590300_1
-- libbrotlienc=1.1.0=hd590300_1
-- libcblas=3.9.0=23_linux64_openblas
-- libcurl=8.9.1=hdb1bdb2_0
-- libdeflate=1.21=h4bc722e_0
+- libblas=3.9.0=24_linux64_openblas
+- libbrotlicommon=1.1.0=hb9d3cd8_2
+- libbrotlidec=1.1.0=hb9d3cd8_2
+- libbrotlienc=1.1.0=hb9d3cd8_2
+- libcblas=3.9.0=24_linux64_openblas
+- libcurl=8.10.1=hbbe4b11_0
+- libdeflate=1.18=h0b41bf4_0
 - libedit=3.1.20191231=he28a2e2_2
 - libev=4.33=hd590300_2
-- libexpat=2.6.2=h59595ed_0
+- libexpat=2.6.3=h5888daf_0
 - libffi=3.4.2=h7f98852_5
 - libgcc=14.1.0=h77fa898_1
 - libgcc-ng=14.1.0=h69a702a_1
@@ -80,47 +88,47 @@ dependencies:
 - libgfortran-ng=14.1.0=h69a702a_1
 - libgfortran5=14.1.0=hc5f4f2c_1
 - libgomp=14.1.0=h77fa898_1
-- libgrpc=1.62.2=h15f2491_0
+- libgrpc=1.58.2=he06187c_0
 - libhwloc=2.11.1=default_hecaa2ac_1000
 - libiconv=1.17=hd590300_2
-- libjpeg-turbo=3.0.0=hd590300_1
-- liblapack=3.9.0=23_linux64_openblas
+- libjpeg-turbo=2.1.5.1=hd590300_1
+- liblapack=3.9.0=24_linux64_openblas
 - libllvm14=14.0.6=hcd5def8_4
 - libnghttp2=1.58.0=h47da74e_1
 - libnsl=2.0.1=hd590300_0
 - libopenblas=0.3.27=pthreads_hac2b453_1
-- libpng=1.6.43=h2797004_0
-- libprotobuf=4.25.3=h08a7969_0
-- libre2-11=2023.09.01=h5a48ba9_2
-- libsqlite=3.46.0=hde9e2c9_0
+- libpng=1.6.44=hadc24fc_0
+- libprotobuf=4.24.3=hf27288f_1
+- libre2-11=2023.09.01=h7a70373_1
+- libsqlite=3.46.1=hadc24fc_0
 - libssh2=1.11.0=h0841786_0
 - libstdcxx=14.1.0=hc0a3c3a_1
 - libstdcxx-ng=14.1.0=h4852527_1
-- libtiff=4.6.0=h46a8edc_4
-- libtorch=2.4.0=cpu_generic_h4a3044c_1
+- libtiff=4.5.1=h8b53f26_1
 - libuuid=2.38.1=h0b41bf4_0
-- libuv=1.48.0=hd590300_0
+- libuv=1.49.0=hb9d3cd8_0
 - libwebp-base=1.4.0=hd590300_0
-- libxcb=1.16=hb9d3cd8_1
+- libxcb=1.15=h0b41bf4_0
 - libxcrypt=4.4.36=hd590300_1
 - libxml2=2.12.7=he7c6b58_4
 - libzlib=1.3.1=h4ab18f5_1
-- lightning=2.4.0=pyhd8ed1ab_0
-- lightning-utilities=0.11.6=pyhd8ed1ab_0
-- llvmlite=0.43.0=py311hbde99c3_0
+- lightning=2.3.3=pyhd8ed1ab_0
+- lightning-utilities=0.11.7=pyhd8ed1ab_0
+- llvmlite=0.43.0=py311h9c9ff8c_1
 - loompy=3.0.6=py_0
 - lz4-c=1.9.4=hcb278e6_0
 - markdown-it-py=3.0.0=pyhd8ed1ab_0
-- markupsafe=2.1.5=py311h459d7ec_0
-- matplotlib-base=3.9.2=py311h74b4f7c_0
+- markupsafe=2.1.5=py311h9ecbd09_1
+- matplotlib-base=3.9.2=py311h2b939e6_1
+- matplotlib-inline=0.1.7=pyhd8ed1ab_0
 - mdurl=0.1.2=pyhd8ed1ab_0
 - ml-collections=0.1.1=pyhd8ed1ab_0
-- ml_dtypes=0.4.0=py311h14de704_1
-- mpc=1.3.1=hfe3b2da_0
-- mpfr=4.2.1=h38ae2d0_2
+- ml_dtypes=0.5.0=py311h7db5c69_0
+- mpc=1.3.1=h24ddda3_1
+- mpfr=4.2.1=h90cbb55_3
 - mpmath=1.3.0=pyhd8ed1ab_0
-- msgpack-python=1.0.8=py311h52f7536_0
-- mudata=0.3.0=pyhd8ed1ab_0
+- msgpack-python=1.1.0=py311hd18a35c_0
+- mudata=0.3.1=pyhd8ed1ab_0
 - multipledispatch=0.6.0=pyhd8ed1ab_1
 - munkres=1.1.4=pyh9f0ad1d_0
 - natsort=8.4.0=pyhd8ed1ab_0
@@ -131,21 +139,27 @@ dependencies:
 - numba=0.60.0=py311h4bc866e_0
 - numpy=1.26.4=py311h64a7726_0
 - numpy_groupies=0.11.2=pyhd8ed1ab_0
-- numpyro=0.15.2=pyhd8ed1ab_0
-- openjpeg=2.5.2=h488ebb8_0
-- openpyxl=3.1.5=py311h459d7ec_0
-- openssl=3.3.1=hb9d3cd8_3
+- numpyro=0.15.3=pyhd8ed1ab_0
+- openjpeg=2.5.0=hfec8fc6_2
+- openpyxl=3.1.5=py311h50c5138_1
+- openssl=3.3.2=hb9d3cd8_0
 - opt-einsum=3.3.0=hd8ed1ab_2
 - opt_einsum=3.3.0=pyhc1e730c_2
 - optax=0.2.2=pyhd8ed1ab_1
 - orbax-checkpoint=0.4.4=pyhd8ed1ab_0
 - packaging=24.1=pyhd8ed1ab_0
-- pandas=2.2.2=py311h14de704_1
+- pandas=2.2.3=py311h7db5c69_1
+- parso=0.8.4=pyhd8ed1ab_0
 - patsy=0.5.6=pyhd8ed1ab_0
-- pillow=10.4.0=py311h82a398c_0
-- pip=24.2=pyhd8ed1ab_0
-- protobuf=4.25.3=py311h7b78aeb_0
-- pthread-stubs=0.4=h36c2ea0_1001
+- pexpect=4.9.0=pyhd8ed1ab_0
+- pickleshare=0.7.5=py_1003
+- pillow=10.0.0=py311h0b84326_0
+- pip=24.2=pyh8b19718_1
+- prompt-toolkit=3.0.48=pyha770c72_0
+- protobuf=4.24.3=py311h46cbc50_1
+- pthread-stubs=0.4=hb9d3cd8_1002
+- ptyprocess=0.7.0=pyhd3deb0d_0
+- pure_eval=0.2.3=pyhd8ed1ab_0
 - pybind11-abi=4=hd8ed1ab_3
 - pycparser=2.22=pyhd8ed1ab_0
 - pygments=2.18.0=pyhd8ed1ab_0
@@ -154,56 +168,59 @@ dependencies:
 - pyro-api=0.1.2=pyhd8ed1ab_0
 - pyro-ppl=1.9.1=pyhd8ed1ab_0
 - pysocks=1.7.1=pyha2e5f31_6
-- python=3.11.9=hb806964_0_cpython
+- python=3.11.10=hc5c86c4_1_cpython
 - python-dateutil=2.9.0=pyhd8ed1ab_0
-- python-tzdata=2024.1=pyhd8ed1ab_0
+- python-tzdata=2024.2=pyhd8ed1ab_0
 - python_abi=3.11=5_cp311
-- pytorch=2.4.0=cpu_generic_py311h7a8ff39_1
-- pytorch-lightning=2.4.0=pyhd8ed1ab_0
+- pytorch=2.0.0=cpu_generic_py311h1e09d83_3
+- pytorch-lightning=2.3.3=pyhd8ed1ab_0
 - pytz=2024.1=pyhd8ed1ab_0
-- pyyaml=6.0.2=py311h61187de_0
+- pyyaml=6.0.2=py311h9ecbd09_1
 - qhull=2020.2=h434a139_5
 - rav1e=0.6.6=he8a937b_2
-- re2=2023.09.01=h7f4b329_2
+- re2=2023.09.01=h7f4b329_1
 - readline=8.2=h8228510_1
 - requests=2.32.3=pyhd8ed1ab_0
-- rich=13.7.1=pyhd8ed1ab_0
-- scanpy=1.10.2=pyhd8ed1ab_0
+- rich=13.8.1=pyhd8ed1ab_0
+- scanpy=1.10.3=pyhd8ed1ab_0
 - scikit-learn=1.1.3=py311h3b52e38_1
-- scipy=1.13.1=py311h517d4fd_0
+- scipy=1.14.1=py311he1f765f_0
 - scvelo=0.3.2=pyhd8ed1ab_1
-- scvi-tools=1.1.6=pyhd8ed1ab_1
+- scvi-tools=1.1.6.post1=pyhd8ed1ab_0
 - seaborn=0.13.2=hd8ed1ab_2
 - seaborn-base=0.13.2=pyhd8ed1ab_2
 - session-info=1.0.0=pyhd8ed1ab_0
-- setuptools=72.2.0=pyhd8ed1ab_0
+- setuptools=75.1.0=pyhd8ed1ab_0
 - six=1.16.0=pyh6c4a22f_0
-- sleef=3.6.1=h1b44611_3
+- sleef=3.7=h1b44611_0
 - snappy=1.2.1=ha2e4443_0
 - sparse=0.15.4=pyhd8ed1ab_0
-- statsmodels=0.14.2=py311h18e1886_0
+- stack_data=0.6.2=pyhd8ed1ab_0
+- statsmodels=0.14.3=py311h9f3472d_1
 - stdlib-list=0.10.0=pyhd8ed1ab_0
 - svt-av1=2.2.1=h5888daf_0
 - sympy=1.13.2=pypyh2585a3b_103
-- tbb=2021.12.0=h434a139_3
-- tensorstore=0.1.62=py311h865b1b2_0
+- tbb=2021.13.0=h84d6215_0
+- tensorstore=0.1.44=py311h02d6f02_2
 - threadpoolctl=3.5.0=pyhc1e730c_0
 - tk=8.6.13=noxft_h4845f30_101
 - toolz=0.12.1=pyhd8ed1ab_0
-- torchmetrics=1.4.0.post0=pyhd8ed1ab_0
+- torchmetrics=1.4.2=pyhd8ed1ab_0
 - tqdm=4.66.5=pyhd8ed1ab_0
+- traitlets=5.14.3=pyhd8ed1ab_0
 - typing-extensions=4.12.2=hd8ed1ab_0
 - typing_extensions=4.12.2=pyha770c72_0
 - tzdata=2024a=h8827d51_1
 - umap-learn=0.5.6=py311h38be061_1
-- urllib3=2.2.2=pyhd8ed1ab_1
+- urllib3=2.2.3=pyhd8ed1ab_0
+- wcwidth=0.2.13=pyhd8ed1ab_0
 - wheel=0.44.0=pyhd8ed1ab_0
-- xarray=2024.7.0=pyhd8ed1ab_0
-- xorg-libxau=1.0.11=hd590300_0
-- xorg-libxdmcp=1.1.3=h7f98852_0
+- widgetsnbextension=4.0.13=pyhd8ed1ab_0
+- xarray=2024.9.0=pyhd8ed1ab_0
+- xorg-libxau=1.0.11=hb9d3cd8_1
+- xorg-libxdmcp=1.1.3=hb9d3cd8_1
 - xz=5.2.6=h166bdaf_0
 - yaml=0.2.5=h7f98852_2
-- zipp=3.20.1=pyhd8ed1ab_0
-- zstandard=0.23.0=py311h5cd10c7_0
+- zipp=3.20.2=pyhd8ed1ab_0
+- zstandard=0.23.0=py311hbc35293_1
 - zstd=1.5.6=ha6fb4c9_0
-
diff --git a/inst/envs/format_yaml_to_r.R b/inst/envs/format_yaml_to_r.R
index 7c8fedd..e3d032d 100644
--- a/inst/envs/format_yaml_to_r.R
+++ b/inst/envs/format_yaml_to_r.R
@@ -1,5 +1,5 @@
 library(yaml)
-yaml_data <- yaml::read_yaml("inst/envs/Linux_x86_64_anaconda.yaml")
+yaml_data <- yaml::read_yaml("inst/envs/Linux_x86_64.yaml")
 r_data <- gsub("([[:alnum:]_]+)=([[:alnum:].]+)=.+", "\\1==\\2" , yaml_data$dependencies)
 cat(paste0(
   "c(",