From 22bad4279df14561709f6c236567d68259f4ee76 Mon Sep 17 00:00:00 2001 From: Charlotte Soneson Date: Thu, 21 Apr 2022 09:57:38 +0200 Subject: [PATCH] Switch zellkonverter::.AnnDataDependencies to zellkonverter::AnnDataDependencies() (#60) --- DESCRIPTION | 4 ++-- NAMESPACE | 2 +- R/basilisk.R | 4 ++-- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 8423f23..7ee1eba 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: velociraptor Title: Toolkit for Single-Cell Velocity -Version: 1.5.2 -Date: 2022-01-27 +Version: 1.5.3 +Date: 2022-04-19 Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")), person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')), person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')), diff --git a/NAMESPACE b/NAMESPACE index a81e9a1..06a255c 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -31,6 +31,6 @@ importFrom(basilisk,BasiliskEnvironment) importFrom(reticulate,import) importFrom(scuttle,normalizeCounts) importFrom(stats,median) -importFrom(zellkonverter,.AnnDataDependencies) importFrom(zellkonverter,AnnData2SCE) +importFrom(zellkonverter,AnnDataDependencies) importFrom(zellkonverter,SCE2AnnData) diff --git a/R/basilisk.R b/R/basilisk.R index 8a11401..2d80738 100644 --- a/R/basilisk.R +++ b/R/basilisk.R @@ -1,4 +1,4 @@ -# scvelo 0.2.2 and latest version of dependencies in zellkonverter::.AnnDataDependencies succesfully tested. +# scvelo 0.2.2 and latest version of dependencies in zellkonverter::AnnDataDependencies() succesfully tested. .scvelo_dependencies <- c("alabaster==0.7.12", "anndata==0.7.4", "Babel==2.8.0", @@ -71,6 +71,6 @@ "zipp==3.1.0") #' @importFrom basilisk BasiliskEnvironment -#' @importFrom zellkonverter .AnnDataDependencies +#' @importFrom zellkonverter AnnDataDependencies velo.env <- BasiliskEnvironment("env", "velociraptor", packages=.scvelo_dependencies, channels = c("bioconda", "conda-forge"))