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Updated CLI param parsing for Nextflow 24.10

kbestakpushed 11 commits to master • 5883dda…0497802 • 
on Jan 31

Added naivestates-model to recognizable parameters

kbestakpushed 3 commits to master • 69ee2ef…5883dda • 
on Aug 6, 2024

Dynamic samplename in fileseries/filepattern expressions (labsyspharm…

kbestakpushed 11 commits to master • 545aa6f…69ee2ef • 
on May 2, 2024

Documentation update

kbestakpushed 1 commit to Backsub_version_bump • 98b456b…915e997 • 
on Nov 21, 2023

Bumped backsub version and updated documentation

kbestakcreated Backsub_version_bump • 98b456b • 
on Nov 21, 2023

Added instructions for working with pre-stitched images (labsyspharm#525

kbestakpushed 17 commits to master • 3e5d78a…545aa6f • 
on Nov 21, 2023

Update mcquant default pattern

kbestakpushed 1 commit to cellpose_fix • 7775672…0e27528 • 
on Aug 11, 2023

Added pattern for MCQUANT that works with Cellpose masks

kbestakpushed 1 commit to cellpose_fix • 46e1c5c…7775672 • 
on Aug 9, 2023

Allow user model input

kbestakcreated cellpose_fix • 46e1c5c • 
on Aug 9, 2023

naming fix - TODO: imageid

kbestakpushed 1 commit to clahe_seg_prep • 724e8ff…a6941a6 • 
on Jul 13, 2023

naming fix - TODO: imageid

kbestakpushed 1 commit to clahe_seg_prep • a7c91a7…724e8ff • 
on Jul 13, 2023

Fix PublishDir in both modules

kbestakpushed 1 commit to clahe_seg_prep • e2ba5f1…a7c91a7 • 
on Jun 25, 2023

updated container version

kbestakpushed 1 commit to clahe_seg_prep • a5c63ea…e2ba5f1 • 
on Jun 25, 2023

Added clahe application as module within this branch

kbestakcreated clahe_seg_prep • a5c63ea • 
on Jun 25, 2023