diff --git a/Makefile b/Makefile index e481bef..fe12f5f 100644 --- a/Makefile +++ b/Makefile @@ -63,7 +63,7 @@ conda: ## Create the conda environments snakemake $(SMK_PARAMS) --conda-create-envs-only download: ## Download the assemblies and COBS indexes - snakemake download $(SMK_PARAMS) -j 99999 + snakemake download $(SMK_PARAMS) --restart-times 3 -j 99999 match: ## Match queries using COBS (queries -> candidates) scripts/benchmark.py --log logs/benchmarks/match_$(DATETIME).txt "snakemake match $(SMK_PARAMS)" diff --git a/config.yaml b/config.yaml index e37d730..bb2be00 100644 --- a/config.yaml +++ b/config.yaml @@ -59,7 +59,7 @@ max_ram_gb: 12 # maximum number of download threads at a time (note: too many might slow down download speed) # WARNING: this parameter is ignored when running on a cluster -max_download_threads: 8 +max_download_threads: 4 ################################################## ##################################################