README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
devtools::load_all()
```

# go2cell


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By using [Wikidata](https://www.wikidata.org/wiki/Wikidata:Main_Page), go2cell links Gene Ontology terms to cell types, therefore enriching Omics results with open semantic knowledge.

## Installation

You can install the latest version of go2cell from GitHub with:

```r
install.packages("remotes")
remotes::install_github("jvfe/go2cell")
```

## Quickstart

Suppose we want to retrieve cell types with gene markers 
related to GO terms 'muscle contraction' and 'glycoprotein metabolic process':

```{r example, message = FALSE}
library(go2cell)

go_ids <- c("GO:0006936", "GO:0009100")

results <- go2cell(go_ids)
```

```{r show, echo=FALSE}
knitr::kable(head(results))
```