DESCRIPTION

Package: mxfda
Title: A Functional Data Analysis Package for Spatial Single Cell Data
Version: 0.2.2
Date: 2024-10-07
Authors@R: 
    c(
    person("Julia", "Wrobel", role = c("aut"), 
    email = "julia.wrobel@emory.edu",
    comment = c(ORCID = "0000-0001-6783-1421")),
    person("Alex", "Soupir", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0003-1251-9179"),
    email = "alex.soupir@moffitt.org")
    )
Description: Methods and tools for deriving spatial summary functions from single-cell imaging
  data and performing functional data analyses. Functions can be applied to other single-cell
  technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods
  are in the 'refund' package <https://cran.r-project.org/package=refund> while calculation of the
  spatial summary functions are from the 'spatstat' package <https://spatstat.org/>.
License: MIT + file LICENSE
URL: https://github.com/julia-wrobel/mxfda/, http://juliawrobel.com/mxfda/
BugReports: https://github.com/julia-wrobel/mxfda/issues/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    tidyverse,
    survival,
    ggpubr,
    spatialTIME,
    tibble,
    broom,
    refund.shiny,
    Seurat,
    SeuratObject
Imports: 
    magrittr,
    rlang,
    tidyr,
    purrr,
    dplyr,
    ggplot2,
    lifecycle,
    methods,
    stats,
    refund (>= 0.1-35),
    reshape2,
    mgcv,
    spatstat.geom,
    spatstat.explore,
    SpatEntropy,
    SimDesign
Depends: 
    R (>= 2.10),
LazyData: true
LazyDataCompression: bzip2
Config/testthat/edition: 3
VignetteBuilder: knitr