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MI_Data.html
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<a class="navbar-brand" href="index.html">Analysis of multiplex single-cell imaging data in R</a>
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Short Course
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<a href="MI_Data.html">Data Download</a>
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<li>
<a href="MI_intro.html">Background on multiplex single-cell imaging</a>
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<a href="MI_VectraPolarisData.html">VectraPolarisData package</a>
</li>
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<h1 class="title toc-ignore">Data</h1>
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<p>Two datasets will be used in the short course, both available as part
of the <code>VectraPolarisData</code> package on Bioconductor. I also
provide processed versions of these datasets as <code>.rdata</code>
objects, and an exampled <code>.tiff</code> image from the lung cancer
dataset.</p>
<p>They are below with brief descriptions.</p>
<div id="ovarian-cancer-data" class="section level2">
<h2>Ovarian cancer data</h2>
<p>This is a segmented and phenotyped multiplex immunoflurescence
dataset of tumor microarray images of high grade serous ovarian cancer,
used in <a
href="https://aacrjournals.org/mcr/article/19/12/1973/675069/The-Spatial-Context-of-Tumor-Infiltrating-Immune">this
study</a>. The full data are part of the <code>VectraPolarisData</code>
package.</p>
<p>A cleaned version of the data can be found <a
href="./Data/ovarian.RDA">here</a>.</p>
</div>
<div id="lung-cancer" class="section level2">
<h2>Lung cancer</h2>
<p>This is a segmented and phenotyped multiplex immunoflurescence
dataset of non small cell lung carcinoma tissue, used in <a
href="https://pubmed.ncbi.nlm.nih.gov/34048945/">this study</a>. The
full data are part of the <code>VectraPolarisData</code> package, and
contain multiple regions of interest (ROIs) for each subject.</p>
<p>A cleaned version of the data can be found <a
href="./Data/lung.RDA">here</a>.</p>
<p>An example multichannel tiff image can be found <a
href="./Data/lung_component_data.tif">here</a>, with binary segmentation
maps <a href="./Data/lung_binary_seg_maps.tif">here</a>, and a composite
image <a href="./Data/lung.tif">here</a>.</p>
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