Option to change output directory for visualization step?

[jyager3]

I do not have permission to write to /bin file on my system and thus cannot run the view_annotation script.

juliayager@Julias-MacBook-Pro bin % ./view_annotation -i /Users/juliayager/Desktop/APCCFB/week11_virtualizationAndContainers/demo -f /Users/juliayager/Desktop/APCCFB/week11_virtualizationAndContainers/E_coli_k12_dh10b.fna
Removing existing UI data path: /Users/juliayager/GALES/ui/data
Creating symlink to UI data path: /Users/juliayager/GALES/ui/data

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Checking for stored statistics and analyses within input directory, or creating them.
This can cause the first execution on any input directory to take a few minutes.

Checking for FASTA stats file ... found.
Checking for stored GFF features file ... found.
Checking for GFF stats file ... found.
Checking for binary version of reference genome FASTA ... not found. Creating ... /bin/sh: /Users/juliayager/GALES/bin/Darwin/faToTwoBit: Permission denied
Traceback (most recent call last):
File "./view_annotation", line 437, in
main()
File "./view_annotation", line 127, in main
run_command_by_file_presence(fasta_2bit_file, "binary version of reference genome FASTA", cmd)
File "./view_annotation", line 333, in run_command_by_file_presence
run_command(cmd)
File "./view_annotation", line 326, in run_command
raise Exception("ERROR: [{2}] Return code {0} when running the following command: {1}".format(return_code, cmd, datetime.datetime.now()))
Exception: ERROR: [2020-08-09 21:29:41.134613] Return code 126 when running the following command: /Users/juliayager/GALES/bin/Darwin/faToTwoBit /Users/juliayager/Desktop/APCCFB/week11_virtualizationAndContainers/E_coli_k12_dh10b.fna /Users/juliayager/GALES/ui/data/genome.2bit