From 58f3d85553088d0b3facc7d99f4467c6a74ecd52 Mon Sep 17 00:00:00 2001 From: Stefan Janssen Date: Thu, 7 Mar 2024 11:29:49 +0100 Subject: [PATCH] install conda packages --- .github/workflows/qiita-plugin-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/qiita-plugin-ci.yml b/.github/workflows/qiita-plugin-ci.yml index cf1f7ec..0e860b7 100644 --- a/.github/workflows/qiita-plugin-ci.yml +++ b/.github/workflows/qiita-plugin-ci.yml @@ -81,7 +81,7 @@ jobs: run: | conda create --quiet --yes -n qp-dbbact python=3.11 pip conda activate qp-deblur - # conda install --quiet --yes -c bioconda -c biocore "VSEARCH=2.7.0" MAFFT=7.310 SortMeRNA=2.0 fragment-insertion numpy==1.13.0 cython + conda install --quiet --yes -c bioconda -c biocore scikit-bio biom-format pandas wordcloud export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg