github_tests.yml

name: Integration Tests & Code Style

on:
  push:
    branches: [ master, dev ]
  pull_request:
    branches: [ master, dev ]

jobs:
  build-linux:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout Repo
      uses: actions/checkout@v2
      with:
          lfs: true
    - name: Checkout LFS objects
      run: git lfs checkout

    - name: Set up Python
      uses: actions/setup-python@v2

    - name: Install dependencies
      run: |
        $CONDA/bin/conda env update --file environment.yml --name base

    - name: Lint with flake8
      run: |
        $CONDA/bin/flake8 src/marbel/

    - name: Run tests with pytest
      run: |
          $CONDA/bin/pytest tests --doctest-modules --cov=src/marbel --cov-report=xml

    - name: Convert coverage to lcov format
      run: |
        $CONDA/bin/coverage lcov

#    - name: Send coverage report to Coveralls
#      uses: coverallsapp/github-action@master
#      with:
#        github-token: ${{ secrets.GITHUB_TOKEN }}
#        path-to-lcov: "coverage.lcov"