- Update: Detect mixed model and show corresponding values in 'TableSubgroupGLM', 'TableSubgroupMultiGLM'
- fix: pairwise options in CreateTableOne2, CreateTableOneJS, svyCreateTableOne2, svyCreateTableOneJS
- Update: Add event, count_by option in TableSubgroupCox, TableSubgroupMultiCox
- Update: Add pairwise option in CreateTableOne2, CreateTableOneJS, svyCreateTableOne2, svyCreateTableOneJS
- Update: Add
labeldata
option inTableSubgroupGLM
,TableSubgroupMultiGLM
,TableSubgroupCox
,TableSubgroupMultiCox
- Fix:
cox2.display
HR
- Fix: error in
TableSubgroupMultiGLM
when covariates
- Fix: error in
forestcox
when categorical binary outcome - Fix: error in
forestglm
when categorical covariates
- Update: Add cox2.display available in fine-and-gray(competing risk), Multi-State Model (MSM)
- Update: Add TableSubgroupMultiCox available in fine-and-gray(competing risk)
- Fix: error in
forestcox
andforestglm
with datatype of P value in table
- Fix: error in subgroup option due to non-existent item in
forestcox
- Fix: Factor order error in
forestcox
- Fix:
addOverall
options tosvyCreateTableOneJS
- Fix:
TableSubgroupCox
- Update: Add
weights
option toTableSubgroupCox
andTableSubgroupMultiCox
for marginal cox model. ex:weights = "weights"
- Update: Add
strata
option toTableSubgroupCox
andTableSubgroupMultiCox
for marginal cox model. ex:strata = "sex"
- Fix: error in
TableSubgroupMultiCox
with cluster
- Fix: Interaction P when 3 or more categorical subgroups in
TableSubgroupCox
andTableSubgroupMultiCox
- Add AIC metric to
cox2.display
.
- Update: Add
cluster
option toTableSubgroupCox
andTableSubgroupMultiCox
for marginal cox model. ex:cluster = "inst"
- Fix: error for multi-category independent variable in
forestcox
andforestglm
.
- Fix: error and ref. for interaction terms in
svycox
andsvyglm
.
- Fix: error and ref. for interaction terms in
lmer
.
- Fix: error about interaction terms in
coxme
.
- Fix: ref. for interaction terms in
cox2
.
- Fix: ref. for interaction terms in
glmshow
.
- Add
normalityTest
option toCreateTableOneJS
to perform the Shapiro test for all variables.
- Add family 'poisson', 'quasipoisson' in
glmshow.display
andTableSubgroupMultiGLM
- Add data
mort
- Bugfix
TableSubgroupGLM
: thanks forweisx2022
- Bugfix
TableSubgroupCox
: thanks forciciing
- Fix: confidence interval calculation in
svyglm
( thanks forcyk0315
)
- Add
addOverall
options toCreateTableOneJS
andsvyCreateTableOneJS
to add overall column.
- Bugfix
mk.lev
- Bugfix
LabelepiDisplay
: thanks forthisis05
- Bugfix
TableSubgroupCox
: thanks forDing-yuan Wan
- Bugfix
coxme.display
: thanks forCristina Ganuza Vallejo
- Update:
TableSubgroupGLM
&TableSubgroupCox
allow subgroup variable with continuous.
- Update
*.display
: univariate analysis withstats::update
- Bugfix
svyCreateTableOneJS
in example/test.
- Bugfix
svycox.display
-
Remove dependency with
group_split
function (dplyr package) -
Use
survey::regTermTest
for interaction p calculation withsurvey::svycoxph
.
- Remove dependency with car packages
- Bugfix
CreateTableOneJS
,svyCreateTableOneJS
: when with labeldata, variables other than numeric or factor types are excluded.
- Bugfix
TableSubgroupGLM
,TableSubgroupMultiGLM
: p value
- Add
TableSubgroupGLM
,TableSubgroupMultiGLM
: subgroup analysis for GLM(gaussian, logistic)
showpm
option withshowAllLevels = F
when no strata.
-
TableSubgroupCox
: applyextend = T
option tosummary.survfit
-
LabelepiDisplay
,LabeljsTable
with only 1 independent variable.
CreateTableOneJS
,svyCreateTableOneJS
: Addshowpm
option to show normal distributed continuous variables as Mean ± SD.
- Bugfix
LabelepiDisplay
,LabeljsTable
: label error.
- Bugfix
TableSubgroupCox
: error with too large time_eventrate
-
Bugfix
TableSubgroupCox
: error with factor variable includingNA
. -
Update
TableSubgroupCox
: compatible with upcoming survival pacakge update.
- Update
svycox.display
: compatible with upcoming survival pacakge update.
- Column name fix: Run
CreateTableOneJS
with 2 level strata &psub = F
.
-
Additional bug fix: match with survival3.1-x.
-
class
issue: https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html
- Updates & Bug fix: match with survival3.1-x.
- Updates: Non-normal variables can be summarized with [min,max].
- Bug fixes: Additional incorrect P for interaction in
TableSubgroupCox
.
- Bug fixes: Incorrect P for interaction in
TableSubgroupCox
.
- Bug fixes: Univariate analysis in
geeglm.display
.
- Bug fixes: Apply label information to table 1 with strata.
CreateTableOneJS
andsvyCreateTableOneJS
can get simplified table with showAllLevels = F option.
TableSubgroupMultiCox
: Get sub-group analysis table for forestplot with Cox/svycox model.
- Update
CreateTableOneJS
andsvyCreateTableOneJS
according to tableone package(0.10.0).
- Add namespace survival::cluster, survival::frailty to
cox2.display
- Remove 2 packages to Import: DT, epiDisplay.
- Fix typo in DESCRIPTION.
- Fix description text and some examples for cran release.
- Change package Title for cran release.
- Fix some spell for cran release
-
Update travis-ci
-
Add appveyor CI to test window environment
-
Add vignettes
- Add R-squared to
glmshow.display
svyCreateTableOne2
,svyCreateTableOneJS
,LabelJsTable
,LabelepiDisplay
andsvyregress.display
coefNA
can be used insvyregress.display
-
svyglm
function. -
Apply testhat.
-
Auto-selection between Chi-square test and Fisher's exact test in
CreateTableOneJS
,CreateTableOne2
. -
Table 1 for survey data:
svyCreateTableOne2
andsvyCreateTableOneJS
are modified functions ofsvyCreateTableOne
(tableone package).
-
New function:
coefNA
-
Bug fixes: Coefficients in
glmshow.display
,cox2.display
- Bug fixes: data.frame & cluster model issue in
cox2.display
- Bug fixes : duplicate variable name -
glmshow.display
,cox2.display
,geeglm.display
,coxme.display
glmshow.display
: table fromglm.object
.
LabelepiDisplay
: column name issue.
svycox.display
: table fromsvycoxph.object
in survey package
svyregress.display
: table fromsvyglm.object
in survey package
-
Update:
cox2.display
function allowsdata
argument. -
Remove
jsBasicGadget
: Move to jsmodule package.
-
Shiny gadget for descriptive statistics:
jsBasicGadget
-
Rstudio Addin of
jsBasicGadget
:jsBasicAddin
- Bug fixes:
geeExp
,lmerExp
function
- Bug fixes:
coxExp
,cox2.display
function
-
Table from
coxph.object
(survival package) - allowcluster
&frailty
options:cox2.display
function -
Apply label information to
cox2.display
:LabeljsCox
function -
Apply label information to
geeglm.display
:LabeljsGeeglm
function
- Bug fixes:
geeglm.display
function
-
Apply label information to
epiDisplay.object
:LabelepiDisplay
function -
Apply label information to
lmer.display
,coxme.display
:LabeljsMixed
function
- Table from
coxme.object
(coxme package):coxme.display
function
- Bug fixes: 1 variable case.
- Change default page length option of
opt.tb1
from 10 to 25.