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beans20190718_metadata.yml
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experimenter name: Alison Comrie
lab: Loren Frank
institution: University of California, San Francisco
experiment description: Reinforcement learning
session description: Reinforcement leaarning
session_id: beans_01
subject:
description: Long Evans Rat
genotype: Wild Type
sex: Male
species: Rat
subject id: Beans
weight: Unknown
data acq device:
- system: SpikeGadgets
amplifier: Intan
adc_circuit: Intan
associated_files:
- name: statescript_r1
description: state script log run 1
path: /stelmo/loren/beans/raw/20190718/20190718_beans_02_r1.stateScriptLog
task_epochs:
- 2
- name: statescript_r2
description: state script log run 2
path: /stelmo/loren/beans/raw/20190718/20190718_beans_04_r2.stateScriptLog
task_epochs:
- 4
device:
name:
- Trodes
units:
analog: 'unspecified'
behavioral_events: 'unspecified'
times_period_multiplier: 1.5
# A/D units to volts: 0.195 uV / lsb
raw_data_to_volts : 0.000000195
default_header_file_path: default_header.xml
cameras:
- id: 0
meters_per_pixel: 0.00055
manufacturer: unknown
model: unknown
lens: unknown
camera_name: beans sleep camera
- id: 1
meters_per_pixel: 0.002
manufacturer: unknown2
model: unknown2
lens: unknown2
camera_name: beans run camera
tasks:
- task_name: Sleep
task_description: The animal sleeps in a small empty box
camera_id:
- 0
task_epochs:
- 1
- 3
- task_name: Stem+Leaf
task_description: Spatial Bandit
camera_id:
- 1
task_epochs:
- 2
- 4
associated_video_files:
- name: 20190718_beans_01_s1.1.h264
camera_id : 0
task_epoch: 1
- name: 20190718_beans_02_r1.1.h264
camera_id : 1
task_epoch: 2
- name: 20190718_beans_03_s2.1.h264
camera_id : 0
task_epoch: 3
- name: 20190718_beans_04_r2.1.h264
camera_id : 1
task_epoch: 4
behavioral_events:
- description: Din1
name: Poke1
- description: Din2
name: Poke2
- description: Din3
name: Poke3
- description: Din4
name: Poke4
- description: Din5
name: Poke5
- description: Din6
name: Poke6
- description: Din13
name: Camera_Ticks
- description: Dout1
name: Light1
- description: Dout2
name: Light2
- description: Dout3
name: Light3
- description: Dout4
name: Light4
- description: Dout5
name: Light5
- description: Dout6
name: Light6
- description: Dout7
name: Pump1
- description: Dout8
name: Pump2
- description: Dout9
name: Pump3
- description: Dout10
name: Pump4
- description: Dout11
name: Pump5
- description: Dout12
name: Pump6
electrode groups:
- id: 0
location: mPFC
device_type: 128c-4s8mm6cm-20um-40um-sl
description: 'Probe 1'
targeted_location: 'mPFC'
targeted_x: 0.0
targeted_y: 0.0
targeted_z: 0.0
units: 'um'
- id: 1
location: mPFC
device_type: 128c-4s8mm6cm-20um-40um-sl
description: 'Probe 2'
targeted_location: 'mPFC'
targeted_x: 0.0
targeted_y: 0.0
targeted_z: 0.0
units: 'um'
ntrode electrode group channel map:
- ntrode_id: 1
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 0
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
10: 10
11: 11
12: 12
13: 13
14: 14
15: 15
16: 16
17: 17
18: 18
19: 19
20: 20
21: 21
22: 22
23: 23
24: 24
25: 25
26: 26
27: 27
28: 28
29: 29
30: 30
31: 31
- ntrode_id: 2
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 32
1: 33
2: 34
3: 35
4: 36
5: 37
6: 38
7: 39
8: 40
9: 41
10: 42
11: 43
12: 44
13: 45
14: 46
15: 47
16: 48
17: 49
18: 50
19: 51
20: 52
21: 53
22: 54
23: 55
24: 56
25: 57
26: 58
27: 59
28: 60
29: 61
30: 62
31: 63
- ntrode_id: 3
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 64
1: 65
2: 66
3: 67
4: 68
5: 69
6: 70
7: 71
8: 72
9: 73
10: 74
11: 75
12: 76
13: 77
14: 78
15: 79
16: 80
17: 81
18: 82
19: 83
20: 84
21: 85
22: 86
23: 87
24: 88
25: 89
26: 90
27: 91
28: 92
29: 93
30: 94
31: 95
- ntrode_id: 4
electrode_group_id: 0
bad_channels: [2,6,10,14,18,22,26,30] #pedoting issue every 4th chan
map:
0: 96
1: 97
2: 98
3: 99
4: 100
5: 101
6: 102
7: 103
8: 104
9: 105
10: 106
11: 107
12: 108
13: 109
14: 110
15: 111
16: 112
17: 113
18: 114
19: 115
20: 116
21: 117
22: 118
23: 119
24: 120
25: 121
26: 122
27: 123
28: 124
29: 125
30: 126
31: 127
- ntrode_id: 5
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #but they all look like they've got basically nothing to me - recall the Dow Corning issues!
map:
0: 0
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
10: 10
11: 11
12: 12
13: 13
14: 14
15: 15
16: 16
17: 17
18: 18
19: 19
20: 20
21: 21
22: 22
23: 23
24: 24
25: 25
26: 26
27: 27
28: 28
29: 29
30: 30
31: 31
- ntrode_id: 6
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #but they all look like they've got basically nothing to me - recall the Dow Corning issues!
map:
0: 32
1: 33
2: 34
3: 35
4: 36
5: 37
6: 38
7: 39
8: 40
9: 41
10: 42
11: 43
12: 44
13: 45
14: 46
15: 47
16: 48
17: 49
18: 50
19: 51
20: 52
21: 53
22: 54
23: 55
24: 56
25: 57
26: 58
27: 59
28: 60
29: 61
30: 62
31: 63
- ntrode_id: 7
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #also questionable - see rec
map:
0: 64
1: 65
2: 66
3: 67
4: 68
5: 69
6: 70
7: 71
8: 72
9: 73
10: 74
11: 75
12: 76
13: 77
14: 78
15: 79
16: 80
17: 81
18: 82
19: 83
20: 84
21: 85
22: 86
23: 87
24: 88
25: 89
26: 90
27: 91
28: 92
29: 93
30: 94
31: 95
- ntrode_id: 8
electrode_group_id: 1
bad_channels: [2,6,10,14,18,22,26,30] #also questionable - see rec
map:
0: 96
1: 97
2: 98
3: 99
4: 100
5: 101
6: 102
7: 103
8: 104
9: 105
10: 106
11: 107
12: 108
13: 109
14: 110
15: 111
16: 112
17: 113
18: 114
19: 115
20: 116
21: 117
22: 118
23: 119
24: 120
25: 121
26: 122
27: 123
28: 124
29: 125
30: 126
31: 127