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my-publications.bib
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% Encoding: UTF-8
@article{Diaz-Colunga2024global,
title={Global epistasis and the emergence of function in microbial consortia},
author={Diaz-Colunga, Juan and Skwara, Abigail and Vila, Jean CC and Bajic, Djordje and S{\'a}nchez, {\'A}lvaro},
journal={Cell},
volume={378},
number={187},
pages={1--12},
year={2024},
doi={10.1016/j.cell.2024.04.016},
URL={https://www.cell.com/cell/fulltext/S0092-8674%2824%2900411-2},
publisher={Elsevier}
}
@article{diaz2024full,
title={Full factorial construction of synthetic microbial communities},
author={Diaz-Colunga, Juan and Catalan, Pablo and San Roman, Magdalena and Arrabal, Andrea and Sanchez, Alvaro},
journal={eLife},
pages={10.7554/eLife.101906.1},
year={2024},
publisher={Cold Spring Harbor Laboratory}
}
@article{delafuente2024global,
title={Global epistasis in plasmid-mediated antimicrobial resistance},
author={DelaFuente, Javier and Diaz-Colunga, Juan and Sanchez, Alvaro and San Millan, Alvaro},
journal={Molecular Systems Biology},
pages={1--10},
year={2024},
publisher={Nature Publishing Group UK London}
}
@article{sanchez2024optimization,
title={The optimization of microbial functions through rational environmental manipulations},
author={S{\'a}nchez, {\'A}lvaro and Arrabal, Andrea and San Rom{\'a}n, Magdalena and D{\'\i}az-Colunga, Juan},
journal={Molecular Microbiology},
year={2024},
publisher={Wiley Online Library}
}
@article{Diaz-Colunga2023environmental,
title={Environmental modulation of global epistasis in a drug resistance fitness landscape},
author={Diaz-Colunga, Juan and Sanchez, Alvaro and Ogbunugafor, C Brandon},
journal={Nature Communications},
volume={14},
number={1},
pages={8055},
year={2023},
publisher={Nature Publishing Group UK London}
}
@article{Sanchez2023community,
title={The community-function landscape of microbial consortia},
author={Sanchez, Alvaro and Bajic, Djordje and Diaz-Colunga, Juan and Skwara, Abigail and Vila, Jean CC and Kuehn, Seppe},
journal={Cell Systems},
volume={14},
number={2},
pages={122--134},
year={2023},
publisher={Elsevier}
}
@article{Skwara2023,
title={Statistically learning the functional landscape of microbial communities},
author={Skwara, Abigail and Gowda, Karna and Yousef, Mahmoud and Diaz-Colunga, Juan and Raman, Arjun S and Sanchez, Alvaro and Tikhonov, Mikhail and Kuehn, Seppe},
journal={Nature Ecology \& Evolution},
pages={1--11},
year={2023},
publisher={Nature Publishing Group UK London}
}
@article{Ruiz2023,
title={Predictability of the community-function landscape in wine yeast ecosystems},
author={Ruiz, Javier and de Celis, Miguel and Diaz-Colunga, Juan and Vila, Jean CC and Benitez-Dominguez, Belen and Vicente, Javier and Santos, Antonio and Sanchez, Alvaro and Belda, Ignacio},
journal={Molecular Systems Biology},
volume={19},
number={9},
pages={e11613},
year={2023}
}
@article{Diaz-Colunga2022global,
title={Global epistasis on fitness landscapes},
author={Diaz-Colunga, Juan and Skwara, Abigail and Gowda, Karna and Diaz-Uriarte, Ramon and Tikhonov, Mikhail and Bajic, Djordje and Sanchez, Alvaro},
journal={Philosophical Transactions of the Royal Society B},
volume={378},
number={1877},
pages={20220053},
year={2023},
publisher={The Royal Society}
}
@article {Diaz-Colunga2022coalescence,
author = {Diaz-Colunga, Juan and Lu, Nanxi and Sanchez-Gorostiaga, Alicia and Chang, Chang-Yu and Cai, Helen S. and Goldford, Joshua E. and Tikhonov, Mikhail and S{\'a}nchez, {\'A}lvaro},
title = {Top-down and bottom-up cohesiveness in microbial community coalescence},
volume = {119},
number = {6},
elocation-id = {e2111261119},
year = {2022},
doi = {10.1073/pnas.2111261119},
publisher = {National Academy of Sciences},
issn = {0027-8424},
URL = {https://www.pnas.org/content/119/6/e2111261119},
eprint = {https://www.pnas.org/content/119/6/e2111261119.full.pdf},
journal = {Proceedings of the National Academy of Sciences}
}
@article{Estrela2022,
title={Diversity begets diversity under microbial niche construction},
author={Estrela, Sylvie and Diaz-Colunga, Juan and Vila, Jean CC and Sanchez-Gorostiaga, Alicia and Sanchez, Alvaro},
journal={bioRxiv},
year={2022},
publisher={Cold Spring Harbor Laboratory}
}
@Article{Sanchez2021,
author = {{\'{A}}lvaro S{\'{a}}nchez and Jean C.C. Vila and Chang-Yu Chang and Juan Diaz-Colunga and Sylvie Estrela and Mar{\'{\i}}a Rebolleda-Gomez},
journal = {Annual Review of Biophysics},
title = {Directed Evolution of Microbial Communities},
year = {2021},
month = {may},
number = {1},
pages = {323--341},
volume = {50},
doi = {10.1146/annurev-biophys-101220-072829},
publisher = {Annual Reviews},
}
@Article{Chang2021,
author = {Chang-Yu Chang and Jean C. C. Vila and Madeline Bender and Richard Li and Madeleine C. Mankowski and Molly Bassette and Julia Borden and Stefan Golfier and Paul Gerald L. Sanchez and Rachel Waymack and Xinwen Zhu and Juan Diaz-Colunga and Sylvie Estrela and Maria Rebolleda-Gomez and Alvaro Sanchez},
journal = {Nature Ecology {\&} Evolution},
title = {Engineering complex communities by directed evolution},
year = {2021},
month = {may},
doi = {10.1038/s41559-021-01457-5},
publisher = {Springer Science and Business Media {LLC}},
}
@article{Diaz-Colunga2021,
doi = {10.1371/journal.pcbi.1009055},
author = {Diaz-Colunga, Juan and Diaz-Uriarte, Ramon},
journal = {PLOS Computational Biology},
publisher = {Public Library of Science},
title = {Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?},
year = {2021},
month = {12},
volume = {17},
url = {https://doi.org/10.1371/journal.pcbi.1009055},
pages = {1-23},
number = {12},}
@Article{Diaz-Colunga2018,
author = {Silvia M{\'{a}}rquez-Jurado and Juan D{\'{\i}}az-Colunga and Ricardo Pires das Neves and Antonio Martinez-Lorente and Fernando Almaz{\'{a}}n and Ra{\'{u}}l Guantes and Francisco J. Iborra},
title = {Mitochondrial levels determine variability in cell death by modulating apoptotic gene expression},
journal = {Nature Communications},
year = {2018},
volume = {9},
number = {1},
month = {jan},
doi = {10.1038/s41467-017-02787-4},
publisher = {Springer Nature},
}
@Article{Lima2018,
author = {A. F. Lima and G. May and J. D{\'{\i}}az-Colunga and S. Pedreiro and A. Paiva and L. Ferreira and T. Enver and F. J. Iborra and R. Pires das Neves},
title = {Osmotic modulation of chromatin impacts on efficiency and kinetics of cell fate modulation},
journal = {Scientific Reports},
year = {2018},
volume = {8},
number = {1},
month = {may},
doi = {10.1038/s41598-018-25517-2},
publisher = {Springer Nature},
}
@Article{Marcos-Villar2018,
author = {Laura Marcos-Villar and Juan D{\'{\i}}az-Colunga and Juan Sandoval and Noelia Zamarre{\~{n}}o and Sara Landeras-Bueno and Manel Esteller and Ana Falc{\'{o}}n and Amelia Nieto},
title = {Epigenetic control of influenza virus: role of H3K79 methylation in interferon-induced antiviral response},
journal = {Scientific Reports},
year = {2018},
volume = {8},
number = {1},
month = {jan},
doi = {10.1038/s41598-018-19370-6},
publisher = {Springer Nature},
}
@Article{Guantes2016,
author = {Guantes, Raúl and Díaz-Colunga, Juan and Iborra, Francisco J.},
title = {Mitochondria and the non-genetic origins of cell-to-cell variability: More is different},
journal = {BioEssays},
year = {2016},
volume = {38},
number = {1},
pages = {64--76},
doi = {10.1002/bies.201500082},
}