From d433d8c7b5f4a5733710803c66347cc9a2b8ac6d Mon Sep 17 00:00:00 2001 From: Robert Oostenveld Date: Thu, 12 Jul 2018 10:31:31 +0200 Subject: [PATCH] Update reorganize_nifti_files.md --- doc/reorganize_nifti_files.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/doc/reorganize_nifti_files.md b/doc/reorganize_nifti_files.md index 00cb777..8eab137 100644 --- a/doc/reorganize_nifti_files.md +++ b/doc/reorganize_nifti_files.md @@ -1,3 +1,8 @@ +# reorganize_nifti_files + +This is a BIDS conversion utility to reorganize existing NIfTI files. It works on a collection of files contained in a single directory or spread over multiple directories. It copies or moves the files according to the source BIDS structure that we started using from 2017 onwards at the DCCN. + +It is an executable Python script which you can run from the Linux command line. It creates a Bash shell script which you should save to file, check and where needed edit (i.e. rename subject identifiers) and subsequently execute using bash. Further details are provided if you execute it without any arguments: ``` This script searches through a directory for all nifti files and prints @@ -17,3 +22,8 @@ Optional arguments --datatype= data type, can be anat|func|dwi|fmap (default = "anat" ``` +See also + * [reorganize_brainvision_files](reorganize_brainvision_files.md) + * [reorganize_ctf_files](reorganize_ctf_files.md) + * [reorganize_dicom_files](reorganize_dicom_files.md) + * [reorganize_presentation_files](reorganize_presentation_files.md)