cluster_script_example.pbs

#!/bin/bash
    
#PBS -l nodes=1:ppn=1,walltime=3:00:00
#PBS -q batch
#PBS -m e
#PBS -M your.email@your.domain
    
cd $PBS_O_WORKDIR
    
module load Python
    
/where/DeSNP/installed/desnp.py --log --zip desnp_example.zip --gzipsnp Sanger.UNC.Combined.SNPs.txt.gz --strains 129S1/SvImJ:CE/J

/where/DeSNP/installed/summarize.py --log -p probes_filtered.tsv --group gene --zip desnp_example.zip
#end PBS script