This repository contains information associated with the manuscript entitled:
Local adaptation in mainland anole lizards: Integrating population history and genome-environment associations.
By Ivan Prates, Anna Penna, Miguel T. Rodrigues, and Ana C. Carnaval.
The manuscript was published in Ecology and Evolution in November 2018 (early view) and can be found at:
https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.4650
The following information is provided:
- R and Unix shell scripts used to prepare and filter the data and perform all analyses.
- R code used to define prior ranges for the parameters of SNAPP and G-PhoCS analyses.
- R code used to make plots of population genetic structure from SNMF results.
- Processed genetic and environmental data used in all analyses.
- Configuration files used in SNAPP (.xml) and G-PhoCS (.ctl) analyses.
- Results from analyses performed in R using the LEA package (LFMM, SNMF, genetic PCA).
- Data used to make maps shown in Fig. 1 of the manuscript.
Raw read data were deposited in the Sequence Read Archive and can be retrieved at:
https://www.ncbi.nlm.nih.gov/sra/PRJNA492310
Supplementary information can be found in the Dryad Digital Repository at: