From fa194f63417e2adf2415168cfb7e137c1c574f63 Mon Sep 17 00:00:00 2001
From: Daniela Butano <daniela@intermine.org>
Date: Mon, 21 Dec 2020 18:06:21 +0000
Subject: [PATCH 1/4] Create CI script for github actions

---
 .github/workflows/buid.yml | 42 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)
 create mode 100644 .github/workflows/buid.yml

diff --git a/.github/workflows/buid.yml b/.github/workflows/buid.yml
new file mode 100644
index 0000000..4d65ecb
--- /dev/null
+++ b/.github/workflows/buid.yml
@@ -0,0 +1,42 @@
+name: HumanMine bio sources CI
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  unit-tests:
+    runs-on: ubuntu-latest
+    
+    services:
+      # Label used to access the service container
+      postgres:
+        image: postgres:11
+        # Provide the password for postgres
+        env: 
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: postgres
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+        ports:
+          - 5432/tcp
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up JDK 11
+      uses: actions/setup-java@v1
+      with:
+        java-version: '11'
+    - name: Set up python 2.7
+      uses: actions/setup-python@v2
+      with:
+        python-version: '2.7'  
+    #- name: Install PostgreSQL client
+     # run: |
+        #sudo apt-get update -y
+       # sudo apt-get install -y libpq-dev postgresql-client
+        #sudo service postgresql start
+    - name: Run unit tests
+      run: ./config/ci/init.sh && ./config/ci/run.sh

From d5146428501261062ccaf88962916b3e91ba163e Mon Sep 17 00:00:00 2001
From: Daniela Butano <daniela@intermine.org>
Date: Mon, 21 Dec 2020 18:12:53 +0000
Subject: [PATCH 2/4] removed travis file

---
 .travis.yml | 10 ----------
 1 file changed, 10 deletions(-)
 delete mode 100644 .travis.yml

diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 5fac87c..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,10 +0,0 @@
-language: python
-addons:
-  postgresql: 9.6
-sudo: true
-jdk:
-- openjdk11
-before_script:
-- "./config/init.sh"
-script:
-- "./config/run.sh"

From 2d0fa22c7ab987826710bcf132c6f9cd5aed45bb Mon Sep 17 00:00:00 2001
From: Daniela Butano <daniela@intermine.org>
Date: Mon, 21 Dec 2020 18:13:28 +0000
Subject: [PATCH 3/4] created a new test user in postgres

---
 config/init.sh | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/config/init.sh b/config/init.sh
index 3bae553..f55c680 100755
--- a/config/init.sh
+++ b/config/init.sh
@@ -2,9 +2,13 @@
 
 set -e
 
-export PSQL_USER=postgres
+export PSQL_USER=test
+sudo -u postgres createuser test
+sudo -u postgres psql -c "alter user test with encrypted password 'test';"
 
 # Set up properties
 source config/create-ci-properties-files.sh
 
-createdb bio-test
+sudo -u postgres createdb bio-test
+grant all privileges on database bio-test to test;
+

From 86b7dde3ac86dc0bdc625dd7f4f0d5af8c6630f4 Mon Sep 17 00:00:00 2001
From: Daniela Butano <daniela@intermine.org>
Date: Mon, 21 Dec 2020 18:16:01 +0000
Subject: [PATCH 4/4] Fix the path of the scripts

---
 .github/workflows/buid.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/buid.yml b/.github/workflows/buid.yml
index 4d65ecb..d7bc0b2 100644
--- a/.github/workflows/buid.yml
+++ b/.github/workflows/buid.yml
@@ -39,4 +39,4 @@ jobs:
        # sudo apt-get install -y libpq-dev postgresql-client
         #sudo service postgresql start
     - name: Run unit tests
-      run: ./config/ci/init.sh && ./config/ci/run.sh
+      run: ./config/init.sh && ./config/run.sh