run_training_one_site_out_docker.sh

#!/bin/bash

OAI_SRC=/media/lext/FAST/OA_progression_project/Data/
OAI_MOST_IMG_SRC=/media/lext/FAST/OA_progression_project/Data/MOST_OAI_00_0_2
WRKDIR=/media/lext/FAST/OA_progression_project/workdir

mkdir -p $WRKDIR/torch_models

docker build -t oaprog_img .

#nvidia-docker run -it --name oa_prog_training --rm \
#	      -v $WRKDIR:/workdir/:rw \
#	      -v $OAI_MOST_IMG_SRC:/data/:ro \
#	      -v $OAI_SRC:/oai_data_root:ro \
#	      -v $WRKDIR/torch_models:/root/.torch/models/ --ipc=host \
#	      oaprog_img python -u run_crossval_across_sites.py \
#	      --snapshots /workdir/snapshots \
#	      --logs /workdir/logs \
#	      --dataset_root /data/ \
#	      --metadata_root /workdir/Metadata \
#	      --oai_data_root /oai_data_root \
#	      --n_epochs 20


for SITE in A B C D E;
do
    nvidia-docker run -it --name oa_prog_oof_inference --rm \
              -v $WRKDIR:/workdir/:rw \
              -v $OAI_MOST_IMG_SRC:/data/:ro \
              -v $OAI_SRC:/oai_data_root:ro \
              -v $WRKDIR/torch_models:/root/.torch/models/ --ipc=host \
              oaprog_img python -u run_oof_inference.py \
              --snapshots_root /workdir/snapshots/2019_09_15_12_18/ \
              --snapshot site_${SITE}/ \
              --save_dir /workdir/snapshots/2019_09_15_12_18/site_${SITE}/inference \
              --dataset_root /data/ \
              --metadata_root /workdir/Metadata
done;