Makefile

# makefile for easy manage package
.PHONY: clean
clean:
	find . -name "*.so*" | xargs rm -rf
	find . -name "*.pyc" | xargs rm -rf
	find . -name "__pycache__" | xargs rm -rf
	find . -name "build" | xargs rm -rf
	find . -name "dist" | xargs rm -rf
	find . -name "MANIFEST" | xargs rm -rf
	find . -name "*.egg-info" | xargs rm -rf
	find . -name ".pytest_cache" | xargs rm -rf
	rm -rf limetr MRTool

install_env:
	( \
		git clone https://github.com/zhengp0/limetr.git && \
		git clone https://github.com/ihmeuw-msca/MRTool.git && \
		source $(CONDA_PREFIX)/etc/profile.d/conda.sh && \
		conda create -n $(ENV_NAME) -y -c conda-forge python=3.7 cyipopt gmp gfortran cython numpy=1.20.3 scipy=1.7.3 pandas=1.3.4 fastparquet=0.7.2 && \
		conda activate $(ENV_NAME) && \
		pip install --global-option=build_ext --global-option '-I$(CONDA_PREFIX)/envs/$(ENV_NAME)/include/' pycddlib && \
		cd limetr && git checkout master && make install && cd .. && \
		cd MRTool && python setup.py install && cd .. && \
		pip install -e .[internal] ; \
	)

.PHONY: test
test:
	pytest -vv tests