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Maybe there are some bugs in navier stokes modules #21996

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I would have to see the hand-coded and AD inputs in order to understand why you are getting different behavior between the two cases.

Regarding the scaling ... I believe what you are seeing there is a consequence of the fact that degrees of freedom controlled by Dirichlet boundary conditions are included in the nonlinear system. So as you scale your physics rows, your Dirichlet rows remain unscaled and so you have different operators

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