argo-data-submission-wf.v1.0.2

• Release argo-data-submission-wf.v1.0.2 (2206aa0)
• Package argo-data-submission-wf.v1.0.2.tar.gz (sha256: 4cdb4b033598658b6c268c1f6d2c465fe4c7758b7d79fb080724d275c9ad0b86)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/argo-data-submission-wf/main.nf -r argo-data-submission-wf.v1.0.2 -params-file <params-json-file>

payload-json-to-tsvs.v0.1.2

• Release payload-json-to-tsvs.v0.1.2 (4c76703)
• Package payload-json-to-tsvs.v0.1.2.tar.gz (sha256: e791cc2cc0d19e0b49aa1d4e24bff2ba31627f212f6aa5c8b269e085db5533e1)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/payload-json-to-tsvs/main.nf -r payload-json-to-tsvs.v0.1.2 -params-file <params-json-file>

1.0.1

Please see the following document for a full breakdown.

Whats changed:

• Generating payloads from read_groups,files,experiment TSVs
• Cross referencing metadata with clinical
• Downloading data from EGA with pyega3 or aspera
• Cross reference metadata with molecular data
• Data upload onto RDPC
• Acknowledgement of successful data submission

Utilizes the following packages:
argo-data-submission-wf.v1.0.1
validate-seqtools.v0.1.7
ega-download-wf.v0.1.6
[email protected]
[email protected]
[email protected]
sanity-check.v0.1.1
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]

argo-data-submission-wf.v1.0.1

• Release argo-data-submission-wf.v1.0.1 (c195788)
• Package argo-data-submission-wf.v1.0.1.tar.gz (sha256: 3f8efb89f4c90c91293a714b52700de5bcfc195a5423ff8dfe9fcbb35cfbf017)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/argo-data-submission-wf/main.nf -r argo-data-submission-wf.v1.0.1 -params-file <params-json-file>

argo-data-submission-wf.v0.3.2

• Release argo-data-submission-wf.v0.3.2 (4a8bf76)
• Package argo-data-submission-wf.v0.3.2.tar.gz (sha256: af5f1f7a01adfd7ffb1362d2bccc09f5dbf157d5c13bd97a8eb3693e9dc413b7)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/argo-data-submission-wf/main.nf -r argo-data-submission-wf.v0.3.2 -params-file <params-json-file>

validate-seqtools.v0.1.7

• Release validate-seqtools.v0.1.7 (c121c04)
• Package validate-seqtools.v0.1.7.tar.gz (sha256: 326b1bc90549a73b83a0a5ccf10331d45c8bf9d4af0c3541d8f00c29159fb700)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/validate-seqtools/main.nf -r validate-seqtools.v0.1.7 -params-file <params-json-file>

validate-seqtools.v0.1.6

• Release validate-seqtools.v0.1.6 (77b3cff)
• Package validate-seqtools.v0.1.6.tar.gz (sha256: 837bea8d6afbbae3f70531ac63b6f936a14e179e72c4d90bd0ae8954865091f6)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/validate-seqtools/main.nf -r validate-seqtools.v0.1.6 -params-file <params-json-file>

ega-download-wf.v0.1.6

• Release ega-download-wf.v0.1.6 (b36b549)
• Package ega-download-wf.v0.1.6.tar.gz (sha256: 09df3dca425bad1be4b367c37227656f04dbc03a7c68f298b726f10b746e77b8)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/ega-download-wf/main.nf -r ega-download-wf.v0.1.6 -params-file <params-json-file>

download-aspera.v0.1.3

• Release download-aspera.v0.1.3 (54882ff)
• Package download-aspera.v0.1.3.tar.gz (sha256: 632b1e5f5f80a398eb1ee24e07127771d4838c9b129cabc917087df1e23d0d45)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/download-aspera/main.nf -r download-aspera.v0.1.3 -params-file <params-json-file>

argo-data-submission-wf.v0.3.1

• Release argo-data-submission-wf.v0.3.1 (f2e5939)
• Package argo-data-submission-wf.v0.3.1.tar.gz (sha256: 82ae8429caadec43e8d22fd8ab908b327bc3bcaaa35d7a7919b669f9fd0ac28d)
• Package URI github.com/icgc-argo/argo-data-submission/[email protected]
• Run the package: nextflow run icgc-argo/argo-data-submission/argo-data-submission-wf/main.nf -r argo-data-submission-wf.v0.3.1 -params-file <params-json-file>