ci.yaml

name: NHM-Assist continuous integration
on:
  # run at 6 AM UTC every day
  schedule:
    - cron: '0 6 * * *'
  push:
    branches:
      - main
      - ci 
    paths-ignore:
      - '**.md'
      - '.gitignore'
  pull_request:
    branches:
      - main
    paths-ignore:
      - '**.md'
      - '.gitignore'

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true
  
jobs:
  
  # lint:
  #   name: Lint
  #   runs-on: ubuntu-latest
  #   defaults:
  #     run:
  #       shell: bash
  #   steps:
  #     - name: Checkout repo
  #       uses: actions/checkout@v4

  #     - name: Setup python
  #       uses: actions/setup-python@v5
  #       with:
  #         python-version: '3.10'

  #     - name: Install ruff
  #       run: pip install ruff

  #     - name: Lint
  #       run: ruff check .

  #     - name: Check format
  #       run: ruff format . --check

  test:
    name: test notebooks
    # needs: lint
    runs-on: ${{ matrix.os }}
    
    strategy:
      fail-fast: false
      matrix:
        os: ["macos-latest", "windows-latest", "ubuntu-latest"]
        python-version: ["3.10",]  #  "3.11"]

    defaults:
      run:
        shell: bash -el {0}
        
    steps:
      - name: Checkout repo
        uses: actions/checkout@v4

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: environment.yaml
          cache-environment: true
          cache-downloads: true

      - name: Pull Williamette River domain data
        run: |
          ./pull_domain.py --name=williamette_river

      - name: Test notebooks
        working-directory: .github/scripts
        run: |
          python test_notebooks.py