Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

error in step1 #30

Open
AEAEAESSC opened this issue Dec 4, 2023 · 0 comments
Open

error in step1 #30

AEAEAESSC opened this issue Dec 4, 2023 · 0 comments

Comments

@AEAEAESSC
Copy link

Hello,
this is my code. Please help me check where the problem is and how to solve it. Thank you very much."
(python2.7_env) [zhanya@mu01 hess-hess-0.5]$ for chrom in $(seq 22)

do
python hess.py
--local-hsqg /external/zhanya/hess/mdd3.txt --local-hsqg /external/zhanya/hess/whr4.txt
--chrom $chrom
--bfile /home/zhanya/hess-hess-0.5/1kg_eur_1pct/ 1kg_eur_1pct_chr$chrom
--partition /home/zhanya/hess-hess-0.5/partition.txt
--out /external/zhanya/hess/step1
done
usage: hess.py [-h] [--bfile BFILE] [--chrom CHROM] [--partition PARTITION]
[--local-hsqg LOCAL-HSQG] [--local-rhog LOCAL-RHOG LOCAL-RHOG]
[--tot-hsqg TOT-HSQG TOT-HSQG] [--num-shared NUM-SHARED]
[--pheno-cor PHENO-COR]
[--local-hsqg-est LOCAL-HSQG-EST LOCAL-HSQG-EST]
[--prefix PREFIX] [--max-num-eig MAX-NUM-EIG]
[--min-eigval MIN-EIGVAL] [--min-maf MIN-MAF]
[--reinflate-lambda-gc [REINFLATE-LAMBDA-GC [REINFLATE-LAMBDA-GC ...]]]
[--gwse-thres GWSE-THRES] --out OUT
hess.py: error: unrecognized arguments: 1kg_eur_1pct_chr1

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant