From ad16d14592d39c9072db2a9ddf81fe10257a37d2 Mon Sep 17 00:00:00 2001 From: Ian Beddows Date: Fri, 17 Sep 2021 14:20:52 -0400 Subject: [PATCH] biscuit v1_0_0 as default module --- bin/config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bin/config.yaml b/bin/config.yaml index 216d70b..b91d8b5 100755 --- a/bin/config.yaml +++ b/bin/config.yaml @@ -20,7 +20,6 @@ control_vectors: FALSE # If config["control_vectors"], then the bed files for th # Only useful if the ref genome included the control vectors with fasta headers >J02459.1 (lamdba / unmethylated control) and >M77789.2 (puc19 / methylated control). # The ref genome can be modified automatically to include these control vectors as the first two contigs by setting config["build_ref_with_methylation_controls"]. - is_nome: FALSE # If data is NOMe-seq data, set to TRUE run_fastq_screen: FALSE # run fastq_screen with --bisulfite mode (uses Bismark) @@ -43,7 +42,8 @@ envmodules: snakemake: bbc/snakemake/snakemake-5.28.0 trim_galore: bbc/trim_galore/trim_galore-0.6.0 #~ biscuit: bbc/biscuit/biscuit_0_3_16 - biscuit: bbc/biscuit/biscuit_dev + #~ biscuit: bbc/biscuit/biscuit_dev + biscuit: bbc/biscuit/biscuit_1_0_0 samblaster: bbc/samblaster/samblaster-0.1.24 htslib: bbc/htslib/htslib-1.10.2 bedtools: bbc/bedtools/bedtools-2.29.2