Welcome to r-inla Discussions! #23

hrue · 2021-01-20T13:08:28Z

hrue
Jan 20, 2021
Maintainer

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mYythc · 2022-08-17T07:13:21Z

mYythc
Aug 17, 2022

hello! I just cannot load www.r-inla.org(because of some network limitation) and downloaded codes about r-inla created by hrue. could you tell me what to do next with so many files?

0 replies

hrue · 2022-08-17T07:18:08Z

hrue
Aug 17, 2022
Maintainer Author

can you download directly from https://inla.r-inla-download.org/R/testing/ ?

…

On Wed, 2022-08-17 at 00:13 -0700, mYythc wrote: hello! I just cannot load www.r-inla.org(because of some network limitation) and downloaded codes about r-inla created by hrue. could you tell me what to do next with so many files? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Håvard Rue Professor of Statistics Statistics Program CEMSE Division King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia ***@***.*** Office: +966 (0)12 808 0640 Mobile: +966 (0)54 470 0421 Research group: bayescomp.kaust.edu.sa R-INLA project: www.r-inla.org Zoom: kaust.zoom.us/my/haavard.rue Zoom.office: Meeting ID 510 522 9264

1 reply

mYythc Aug 17, 2022

i can load the website and see things like this:
| Name | Last modified | Size | Description
| Parent Directory | | - |
| stable/ | 2015-01-02 17:56 | - |
| testing/ | 2015-01-02 17:56 | - |

i just clicked each of them:
Linux-builds/ | 2022-07-23 00:35 | - |
| R/ | 2015-01-02 22:00 | - |
| givemeINLA-testing.R | 2022-07-23 00:32 | 4.4K |
| givemeINLA.R | 2022-07-23 00:32 | 4.4K |
| logfile-12705 | 2022-07-21 08:38 | 29K |
| logfile-236009 | 2022-06-30 13:44 | 29K |
| logfile-392501 | 2022-07-21 11:34 | 29K |
| logfile-466969 | 2022-07-23 01:05 | 22K |
| make-md5 | 2021-03-31 14:35 | 430 |
| r-inla.org/ | 2020-06-30 16:20 | - |
| robots.txt | 2019-11-02 10:01 | 31 |
| updatePackageIndex | 2022-07-21 11:30 | 303 |
| validate | 2020-07-18 15:41 | 664 |

how to download them? could you tell me what to do next? thanks a lot!

hrue · 2022-08-17T08:02:41Z

hrue
Aug 17, 2022
Maintainer Author

then there should not be any issue with doing options(timeout=9999) install.packages("INLA",repos=c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/testing "), dep=TRUE)

…

On Wed, 2022-08-17 at 01:00 -0700, mYythc wrote: > i can load the website and see things like this: > | Name | Last modified | Size | Description > | Parent Directory | | - | > | stable/ | 2015-01-02 17:56 | - | > | testing/ | 2015-01-02 17:56 | - | > i just clicked each of them: > Linux-builds/ | 2022-07-23 00:35 | - | > | R/ | 2015-01-02 22:00 | - | > | givemeINLA-testing.R | 2022-07-23 00:32 | 4.4K | > | givemeINLA.R | 2022-07-23 00:32 | 4.4K | > | logfile-12705 | 2022-07-21 08:38 | 29K | > | logfile-236009 | 2022-06-30 13:44 | 29K | > | logfile-392501 | 2022-07-21 11:34 | 29K | > | logfile-466969 | 2022-07-23 01:05 | 22K | > | make-md5 | 2021-03-31 14:35 | 430 | > | r-inla.org/ | 2020-06-30 16:20 | - | > | robots.txt | 2019-11-02 10:01 | 31 | > | updatePackageIndex | 2022-07-21 11:30 | 303 | > | validate | 2020-07-18 15:41 | 664 | > how to download them? could you tell me what to do next? thanks a > lot! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Håvard Rue Professor of Statistics Statistics Program CEMSE Division King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia ***@***.*** Office: +966 (0)12 808 0640 Mobile: +966 (0)54 470 0421 Research group: bayescomp.kaust.edu.sa R-INLA project: www.r-inla.org Zoom: kaust.zoom.us/my/haavard.rue Zoom.office: Meeting ID 510 522 9264

1 reply

mYythc Aug 17, 2022

something sad:(
Warning in install.packages :
unable to access index for repository https://inla.r-inla-download.org/R/testing
/src/contrib:
cannot open URL 'https://inla.r-inla-download.org/R/testing
/src/contrib/PACKAGES'
Warning in install.packages :
package ‘INLA’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Warning in install.packages :
unable to access index for repository https://inla.r-inla-download.org/R/testing
/bin/windows/contrib/4.2:
cannot open URL 'https://inla.r-inla-download.org/R/testing
/bin/windows/contrib/4.2/PACKAGES'

i can load the website but why cannot open URL???

hrue · 2022-08-17T08:52:16Z

hrue
Aug 17, 2022
Maintainer Author

you need R-4.2

…

On Wed, 2022-08-17 at 01:31 -0700, mYythc wrote: something sad:( Warning in install.packages : unable to access index for repository https://inla.r-inla-download.org/R/testing /src/contrib: cannot open URL 'https://inla.r-inla-download.org/R/testing /src/contrib/PACKAGES' Warning in install.packages : package ‘INLA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages Warning in install.packages : unable to access index for repository https://inla.r-inla-download.org/R/testing /bin/windows/contrib/4.2: cannot open URL 'https://inla.r-inla-download.org/R/testing /bin/windows/contrib/4.2/PACKAGES' i can load the website but why cannot open URL??? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Håvard Rue Professor of Statistics Statistics Program CEMSE Division King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia ***@***.*** Office: +966 (0)12 808 0640 Mobile: +966 (0)54 470 0421 Research group: bayescomp.kaust.edu.sa R-INLA project: www.r-inla.org Zoom: kaust.zoom.us/my/haavard.rue Zoom.office: Meeting ID 510 522 9264

1 reply

mYythc Aug 17, 2022

when i input library()
i can see INLA in R package available
and the version is 22.05.07
Does this prove that I downloaded successfully??!!

hrue · 2022-08-19T15:14:02Z

hrue
Aug 19, 2022
Maintainer Author

try download the recent testing version and make sure you're using R-4.2

…

On Wed, 2022-08-17 at 04:09 -0700, mYythc wrote: when i input library() i can see INLA in R package available and the version is 22.05.07 Does this prove that I downloaded successfully??!! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Håvard Rue Professor of Statistics Statistics Program CEMSE Division King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia ***@***.*** Office: +966 (0)12 808 0640 Mobile: +966 (0)54 470 0421 Research group: bayescomp.kaust.edu.sa R-INLA project: www.r-inla.org Zoom: kaust.zoom.us/my/haavard.rue Zoom.office: Meeting ID 510 522 9264

0 replies

Wenhuan2516 · 2023-07-20T22:57:16Z

Wenhuan2516
Jul 20, 2023

Hi,

I keep getting this error: Error: inla.mkl: src/my.c:172: my_gsl_sf_lnchoose_e: Assertion 0 == 1' failed. inla.mkl: src/my.c:172: my_gsl_sf_lnchoose_e: Assertion 0 == 1' failed.
sh: line 1: 860218 Aborted '/global/u1/w/wenhuan/.conda/envs/r-inla-env/lib/R/library/INLA/bin/linux/64bit/inla.mkl.run' -s -v -t256:1 -B0 -P compact '/tmp/RtmpIOSdd3/filec3223208b0334/Model.ini' > '/tmp/RtmpIOSdd3/filec3223208b0334/Logfile.txt'
Error in inla.inlaprogram.has.crashed() :
The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
If this does not help, please contact the developers at <[email protected]>.
Error in inla.core.safe(formula = formula, family = family, contrasts = contrasts, :
*** Fail to get good enough initial values. Maybe it is due to something else. How to fix it?

1 reply

hrue Jul 21, 2023
Maintainer Author

I guess there is something wrong in the input.

if (m > n) {
	assert(0 == 1);

so you're asking for binomial, f.ex where y=6 and Ntrials=2

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Welcome to r-inla Discussions! #23

hrue Jan 20, 2021 Maintainer

👋 Welcome!

Replies: 6 comments · 4 replies

mYythc Aug 17, 2022

hrue Aug 17, 2022 Maintainer Author

mYythc Aug 17, 2022

hrue Aug 17, 2022 Maintainer Author

mYythc Aug 17, 2022

hrue Aug 17, 2022 Maintainer Author

mYythc Aug 17, 2022

hrue Aug 19, 2022 Maintainer Author

Wenhuan2516 Jul 20, 2023

hrue Jul 21, 2023 Maintainer Author

hrue
Jan 20, 2021
Maintainer

Replies: 6 comments 4 replies

mYythc
Aug 17, 2022

hrue
Aug 17, 2022
Maintainer Author

hrue
Aug 17, 2022
Maintainer Author

hrue
Aug 17, 2022
Maintainer Author

hrue
Aug 19, 2022
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Wenhuan2516
Jul 20, 2023

hrue Jul 21, 2023
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