diff --git a/2022-02-14_michele_vicc_panc_upload.R b/2022-02-14_michele_vicc_panc_upload.R index 9a8a101..c7b010e 100644 --- a/2022-02-14_michele_vicc_panc_upload.R +++ b/2022-02-14_michele_vicc_panc_upload.R @@ -13,6 +13,7 @@ synLogin() # synapse synid_file_vicc <- "syn25541702" +synid_file_uhn <- "syn26033209" # functions ---------------------------- @@ -88,11 +89,18 @@ save_to_synapse <- function(path, # read ---------------------------- -data <- get_synapse_entity_data_in_csv(synid_file_vicc) +vicc <- get_synapse_entity_data_in_csv(synid_file_vicc) +uhn <- get_synapse_entity_data_in_csv(synid_file_uhn) # main ---------------------------- -print(colnames(data)) +print(setdiff(colnames(vicc), colnames(uhn))) +print(setdiff(colnames(uhn), colnames(vicc))) + +config <- list() +config$column_name$patient_id = 'record_id' +uhn_noirr <- uhn %>% + filter(!grepl(pattern = "[_-]2$", x = (!!as.symbol(config$column_name$patient_id)))) # close out ----------------------------