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+cff-version: 1.0.0
+date-released: "2023-07-25"
+authors:
+  - family-names: Tabarin
+    given-names: Thibault
+    orcid: "https://orcid.org/0000-0003-4256-849X"
+  - family-names: Bradley
+    given-names: John
+    orcid: "https://orcid.org/0000-0003-3858-848X"
+  - family-names: Balk
+    given-names: Meghan
+    orcid: "https://orcid.org/0000-0003-2699-3066"
+  - family-names: Lapp
+    given-names: Hilmar
+    orcid: "https://orcid.org/0000-0001-9107-0714"
+identifiers:
+  - description: "This is the BGNN image segmentation workflow managed using snakemake. This workflow contains components to extract image metadata, download images, crop images, and feed images through a segmentation pipeline. The intent is for this to be used as a subworkflow as part of a larger imageomic project."
+    type: doi
+    value: 10.5281/zenodo.7987705
+keywords:
+  - "imageomics"
+  - "workflow"
+  - "machine learning"
+license: MIT
+message: "If you use this software, please cite it using these metadata."
+references:
+  - authors:
+      - family-names: Karnani
+        given-names: Kevin
+      - family-names: Pepper
+        given-names: Joel
+      - family-names: Bakis
+        given-names: Yasin
+      - family-names: Wang
+        given-names: Xiaojun
+      - family-names: "Bart, Jr."
+        given-names: Henry
+      - family-names: Breen
+        given-names: "David E"
+      - family-names: Greenberg
+        given-names: Jane
+    doi: 10.57967/hf/0904
+    repository-code: "https://github.com/hdr-bgnn/drexel_metadata"
+    title: Drexel-metadata-generator
+    type: software
+    version: 0.6
+  - authors:
+      - family-names: Tabarin
+        given-names: Thibault
+      - family-names: Bradley
+        given-names: John
+      - family-names: Lapp
+        given-names: Hilmar
+    doi: 10.5281/zenodo.7987576
+    repository-code: "https://github.com/hdr-bgnn/drexel_metadata_formatter"
+    title: drexel_metadata_formatter
+    type: software
+    version: 0.0.1
+  - authors:
+      - family-names: Tabarin
+        given-names: Thibault
+      - family-names: Bradley
+        given-names: John
+      - family-names: Lapp
+        given-names: Hilmar
+    doi: 10.5281/zenodo.7987485
+    repository-code: "https://github.com/hdr-bgnn/Crop_image"
+    title: Crop_Image
+    type: software
+    version: 0.0.4
+  - authors:
+      - family-names: Maruf
+        given-names: "M."
+      - family-names: Karpatne
+        given-names: Anuj
+    doi: 10.57967/hf/0832
+    repository-code: "https://github.com/hdr-bgnn/BGNN-trait-segmentation"
+    title: BGNN-trait-segmentation
+    type: software
+    version: 0.0.7
+repository-code: "https://github.com/hdr-bgnn/BGNN_Core_Workflow"
+title: "BGNN Core Workflow"
+version: 1.0.1