From a6f51ff6083914579f1e44e9f47a122c3df950ed Mon Sep 17 00:00:00 2001
From: Matthew Avaylon <mavaylon1@berkeley.edu>
Date: Wed, 20 Mar 2024 12:27:48 -0700
Subject: [PATCH] Release 3.13 (#1074)

* Update CHANGELOG.md

* Update release.md

* updates

* Update .github/PULL_REQUEST_TEMPLATE/release.md

Co-authored-by: Steph Prince <40640337+stephprince@users.noreply.github.com>

* Update pyproject.toml

---------

Co-authored-by: Steph Prince <40640337+stephprince@users.noreply.github.com>
---
 .github/PULL_REQUEST_TEMPLATE/release.md |  2 +-
 CHANGELOG.md                             |  2 +-
 pyproject.toml                           |  1 +
 requirements-opt.txt                     | 12 ++++++------
 src/hdmf/common/hdmf-common-schema       |  2 +-
 5 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/.github/PULL_REQUEST_TEMPLATE/release.md b/.github/PULL_REQUEST_TEMPLATE/release.md
index 11bd20bfa..7c5ff5ece 100644
--- a/.github/PULL_REQUEST_TEMPLATE/release.md
+++ b/.github/PULL_REQUEST_TEMPLATE/release.md
@@ -10,7 +10,7 @@ Prepare for release of HDMF [version]
   and any other locations as needed
 - [ ] Update `pyproject.toml` as needed
 - [ ] Update `README.rst` as needed
-- [ ] Update `src/hdmf/common/hdmf-common-schema` submodule as needed. Check the version number and commit SHA manually
+- [ ] Update `src/hdmf/common/hdmf-common-schema` submodule as needed. Check the version number and commit SHA manually. Make sure we are using the latest release and not the latest commit on the `main` branch.
 - [ ] Update changelog (set release date) in `CHANGELOG.md` and any other docs as needed
 - [ ] Run tests locally including gallery tests, and inspect all warnings and outputs
   (`pytest && python test_gallery.py`)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8eddf8270..fb7a71e00 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,6 @@
 # HDMF Changelog
 
-## HDMF 3.13.0 (Upcoming)
+## HDMF 3.13.0 (March 20, 2024)
 
 ### Enhancements
 - Added docs page that lists limitations of support for the HDMF specification language. @rly [#1069](https://github.com/hdmf-dev/hdmf/pull/1069)
diff --git a/pyproject.toml b/pyproject.toml
index ee8037be5..b60ae6943 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,6 +21,7 @@ classifiers = [
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "License :: OSI Approved :: BSD License",
     "Development Status :: 5 - Production/Stable",
     "Operating System :: OS Independent",
diff --git a/requirements-opt.txt b/requirements-opt.txt
index 644fc80be..11cd23e17 100644
--- a/requirements-opt.txt
+++ b/requirements-opt.txt
@@ -1,8 +1,8 @@
 # pinned dependencies that are optional. used to reproduce an entire development environment to use HDMF
-tqdm==4.66.1
-zarr==2.16.1
-linkml-runtime==1.6.0; python_version >= "3.9"
-schemasheets==0.1.24; python_version >= "3.9"
-oaklib==0.5.20; python_version >= "3.9"
-pydantic==1.10.13  # linkml-runtime 1.6.0 and related packages require pydantic<2
+tqdm==4.66.2
+zarr==2.17.1
+linkml-runtime==1.7.3; python_version >= "3.9"
+schemasheets==0.2.1; python_version >= "3.9"
+oaklib==0.5.31; python_version >= "3.9"
+pydantic==2.6.4  # linkml-runtime 1.6.0 and related packages require pydantic<2
 pyyaml==6.0.1; python_version >= "3.9"
diff --git a/src/hdmf/common/hdmf-common-schema b/src/hdmf/common/hdmf-common-schema
index 4d2ddd638..5b4cbb31d 160000
--- a/src/hdmf/common/hdmf-common-schema
+++ b/src/hdmf/common/hdmf-common-schema
@@ -1 +1 @@
-Subproject commit 4d2ddd6387c4e36f21f41964fe8873c083680b15
+Subproject commit 5b4cbb31dbafcff51ca70bf218f464b186568151