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Update requirements and fix test gallery failure on pandas pyarrow wa…
…rning (#157)
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# pinned dependencies to reproduce an entire development environment to use HDMF, run HDMF tests, check code style, | ||
# compute coverage, and create test environments | ||
coverage==6.4.2 | ||
flake8==5.0.4 | ||
flake8-debugger==4.1.2 | ||
flake8-print==5.0.0 | ||
pytest==7.1.2 | ||
pytest-cov==3.0.0 | ||
python-dateutil==2.8.2 | ||
tox==3.25.1 | ||
# pinned dependencies to reproduce an entire development environment to use HDMF-Zarr, | ||
# run HDMF-Zarr tests, check code style, | ||
# compute coverage, and create test environments. note that depending on the version of python installed, different | ||
# versions of requirements may be installed due to package incompatibilities. | ||
# | ||
black==23.10.1 | ||
codespell==2.2.6 | ||
coverage==7.3.2 | ||
hdf5plugin==4.3.0 # hdf5plugin is used to test conversion of plugin filters | ||
pre-commit==3.5.0 | ||
pytest==7.4.3 | ||
pytest-cov==4.1.0 | ||
python-dateutil==2.8.2 | ||
ruff==0.1.3 | ||
tox==4.11.3 |
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tqdm==4.65.0 | ||
fsspec==2023.10.0 | ||
s3fs==2023.10.0 | ||
tqdm==4.66.1 | ||
fsspec==2023.12.2 | ||
s3fs==2023.12.2 |
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# pinned dependencies to reproduce an entire development environment to use HDMF-ZARR | ||
hdmf==3.9.0 | ||
zarr==2.11.0 | ||
hdmf==3.12.0 | ||
zarr==2.16.1 | ||
pynwb==2.5.0 | ||
numpy==1.24.0 | ||
numcodecs==0.11.0 | ||
numpy==1.26.3 | ||
numcodecs==0.12.1 | ||
threadpoolctl==3.2.0 |
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