From 9a51e29ecd1d297dede87fa4384fa288199d7be9 Mon Sep 17 00:00:00 2001 From: Robert Haase Date: Tue, 20 Dec 2022 21:47:40 +0100 Subject: [PATCH 1/2] add infos about timelapse and tracking data to docs --- README.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/README.md b/README.md index cd3fc88..c86068c 100644 --- a/README.md +++ b/README.md @@ -40,6 +40,19 @@ Also these measurements can be visualized by double-clicking table headers: ![img_1.png](measure_point_coordinate.png) +## Working with time-lapse and tracking data + +Note that tables for time-lapse data should include a column named "frame", which indicates which slice in +time the given row refers to. If you want to import your own csv files for time-lapse data make sure to include this column. +If you have tracking data where each column specifies measurements for a track instead of a label at a specific time point, +this column must not be added. + +In case you have 2D time-lapse data you need to convert it into a suitable shape using the function: `Tools > Utilities > Convert 3D stack to 2D time-lapse (time-slicer)`, +which can be found in the [napari time slicer](https://www.napari-hub.org/plugins/napari-time-slicer). + +Last but not least, make sure that in case of time-lapse data the label image has labels that are subsquently labeled per timepoint. +E.g. a dataset where label 5 is missing at timepoint 4 may be visualized incorrectly. + ## Usage, programmatically You can also control the tables programmatically. See this From 81803a935daab9b9119ca4f7e6fa2d177776e933 Mon Sep 17 00:00:00 2001 From: Robert Haase Date: Tue, 20 Dec 2022 21:48:24 +0100 Subject: [PATCH 2/2] bump version --- napari_skimage_regionprops/__init__.py | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/napari_skimage_regionprops/__init__.py b/napari_skimage_regionprops/__init__.py index a2dcf29..da00b71 100644 --- a/napari_skimage_regionprops/__init__.py +++ b/napari_skimage_regionprops/__init__.py @@ -8,7 +8,7 @@ try: from ._version import version as __version__ except ImportError: - __version__ = "0.5.7" + __version__ = "0.6.0" @napari_hook_implementation diff --git a/setup.py b/setup.py index 6b8cdb7..9a54598 100644 --- a/setup.py +++ b/setup.py @@ -36,7 +36,7 @@ def read(fname): packages=find_packages(), python_requires='>=3.8', install_requires=requirements, - version='0.5.7', + version='0.6.0', #use_scm_version=use_scm, setup_requires=['setuptools_scm'], classifiers=[