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GEOparse not downloading a supplementary file for a GSE #72

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grisaitis opened this issue Jun 15, 2021 · 0 comments
Open

GEOparse not downloading a supplementary file for a GSE #72

grisaitis opened this issue Jun 15, 2021 · 0 comments

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@grisaitis
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i'm not sure if this is user error (probably) or library error, but for a particular GEO accession, I can't get GEOparse to download the main supplementary file.

check this out: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE127813

the accession has one supplementary file:

image

but, download_supplementary_files() doesn't download it:

import GEOparse
gse_127813 = GEOparse.get_GEO(geo="GSE127813", destdir="./data_from_geoparse")
gse_127813.download_supplementary_files()
$ tree -h ./data_from_geoparse
data_from_geoparse/
└── [3.2K]  GSE127813_family.soft.gz

0 directories, 1 file

am i doing something wrong?

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