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UnboundLocalError while trying the example from documentation #65

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sowmyamanojna opened this issue Dec 10, 2020 · 2 comments
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@sowmyamanojna
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Thank you for the package.
I am quite new to GEOparse and have been trying to figure out the basics of the package. I tried to implement the initial example provided on the documentation and get an Unbound Local Error. The screenshot of the same is as follows:
image

Python Version: 3.8.5
GEOparse Version: 2.0.2

Any leads about how to overcome this problem would be really helpful. Thanks!

@guma44
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guma44 commented Dec 10, 2020

Hi @sowmyamanojna, most probably the NCBI server changed something. Let me check it.
Rafal

@CholoTook
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This works for me. Did you try simply:
curl ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE1nnn/GSE1563/soft/GSE1563_family.soft.gz

If you can't see that file from your machine using curl, you have some kind of network error unrelated to GEOparse.

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