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DESCRIPTION
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Package: SIPmg
Title: Statistical Analysis to Identify Isotope Incorporating MAGs
Version: 1.4.1
Authors@R:
c(person(given = "Pranav",
family = "Sampara",
role = c("aut", "cre"),
email = "[email protected]"),
person(given = "Kate",
family = "Waring",
role = c("ctb"),
email = "[email protected]"),
person(given = "Ryan",
family = "Ziels",
role = c("aut"),
email = "[email protected]"))
Description: Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs).
Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
URL: https://zielslab.github.io/SIPmg.github.io/
BugReports: https://github.com/ZielsLab/SIPmg
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble,
tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS,
DESeq2, data.table, utils
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2021-11-02 00:22:19 UTC; psampara
Depends: R (>= 3.5.0)
Suggests:
rmarkdown,
knitr,
EBImage,
readr,
BiocManager,
tidyverse
LazyData: true