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updating all installation/environment instructions to match CBW global installs
fix tables for real this time
Revert "fix the navigation tables on wiki pages" This reverts commit 1c78d5acac208efcaf4c284160febd715b2ddcb0.
fix the navigation tables on wiki pages
add example command to summarize environment variables
Updated Environment (markdown)
update the align path. use vars in post-align QC.
Add align var to env.
Fix the FASTA and GTF variable. Use the new vars for copying raw RNA-seq data.
Update to copy files to rnaseq working directory and set shell variables early.
update navigation
Break apart the Installation component from the rest of module 1