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DESCRIPTION
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Package: Rceattle
Title: Fits the multispecies assessment model (CEATTLE) using TMB
Version: 2.0.0.0000
Authors@R:
person(given = "Grant",
family = "Adams",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0003-0297-8347"))
Description: 'Rceattle' is an 'R' package designed to implement the CEATTLE model using Template Model Builder ('TMB'; Kristensen et al. 2015), which can be installed using following https://github.com/kaskr/adcomp/wiki/Download. Rceattle is structured similar to the original manuscript in terms of modularization. Seperate functions estimate retrospective temperature- and size-specific predator rations, prey preference, and weight-at- age. These are then used as inputs to the CEATTLE model to evaluate how predation mortality, recruitment, and survival of three target species change under historical climate conditions and harvest rates.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports:
ggplot2,
MASS,
oce,
readxl,
TMB (>= 1.7.16),
TMBhelper,
writexl,
reshape2,
gplots,
tidyr,
testthat,
foreach,
doParallel
LinkingTo:
TMB
Remotes: kaskr/TMB_contrib_R/TMBhelper
Suggests:
rmarkdown,
knitr
VignetteBuilder: knitr
Depends:
dplyr,
R (>= 2.10)