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ideas-for-future-work.md

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To Do List

Current

  • Write up list of questions
  • Work through Mark's examples
  • Check in with Mark
  • Clean up old to do list
  • Ask Katie about changing her email address
  • Work through list of issues on GitLab

Old List

Katie's Tasks:

  • Work on residual vignette (IN PROGRESS)

    • include a link to the residual document in the documentation

  • modify so works for predictive models (Research at least)(NOT FOR CRAN) -randomForest (from randomForest): contains 'y' and 'predicted' (class is randomForest.formula)(

    • neuralnet (from neuralnet): contains 'response', 'covariates' and 'data' (class is nn)
    • nnet (from nnet): contains 'residuals' and 'fitted.values' (class is nnet)
    • svm (from e1071): contains 'fitted' and 'residuals' (class is svm)

  • test file using testthat

    • how to add lmertest to testthat, but still test lmer as well ???
    • Added in section for warnings and errors, tested all formatting options with 2 plots
    • NOTE:USING THE WORD plot instead of plots
    • NOTE: if plotting a panel of four plots, nrow DOES NOT USE THIRD ROW when nrow = 3

  • round all values shown in interactive plots

    • Check resid and predicted

  • Completed:

    • Rounded data tooltip to 2 decimal places if a decimal is present in any of the numbers and the variable is numeric

      • Added in a check so only rounds if has integers preceding the decimal to avoid roundin 0.0023 to 0

    • add code used to create sticker under data raw (code currently not working)

    • shorten title of constant leverage plot

    • fix resid_interact for binomial case to be more general (Double check names with Katherine)

    • make smoother tooltips consistent (Do we want observation added for smoother?)

    • proof read introduction: + menion that is not on CRAN yet, will need to change soon + leave Github installatin instructions, but mention to check github for working version?

Katherine's Tasks

  • current:

  • later:

    • cleaning board game data and coach salary data to use for paper (and vignettes?)
    • add in links in vignettes to the residual vignette (when finished)
    • contact Jessica Meir to ask for citation of penguin data
    • figure out how to use the "safely" and "quietly" functions to only show desired warnings and suppress the error: grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : polygon edge not found

Ideas for Future Package Versions:

  • write a function for computing standardized residuals for lmer and glmer (Katie)
  • look into testthat and vistest packages for testing
  • create an option for the user to add their own theme
  • add in minimum package versions?? (under imports)
  • add interactive versions of the auxpanel, xpanel, and compare plots
    • maybe add an option in each of the functions for an interactive version
  • option to color residuals by predictor variables?
  • add a resid versus y plot
  • read about mixed model influence diagnostics in SAS for mixed models (Stroup 2018)
  • nested residuals/plots for assessing random effects