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--fuzzy_relaxed option not supported #128

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thompsonmj opened this issue Nov 26, 2024 · 1 comment
Open

--fuzzy_relaxed option not supported #128

thompsonmj opened this issue Nov 26, 2024 · 1 comment
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@thompsonmj
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thompsonmj commented Nov 26, 2024

As shown in the README:

$ gnverifier --fuzzy_relaxed "Bbo bbo"
<usage menu>
unknown flag: --fuzzy_relaxed

The motivation for using this is to get both exact and fuzzy matches from a set of preferred data providers.

For example:

$ gnverifier -j 1 --format compact --sources 11,179 --all_matches --capitalize --fuzzy_relaxed "Siphonogorgia alexandri"

When specifying both GBIF (11) and Open Tree of LIFE (179), only the exact matches from OTOL are returned. When specifying only GBIF, a fuzzy result (with "alexandEri") is returned.

When resolving a large set of terms programmatically with gnverifier as a dependency, we would like to use this standard command format using results from both providers (exact and fuzzy matching) and perform logic on the results.

@dimus dimus added the bug Something isn't working label Jan 23, 2025
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dimus commented Jan 23, 2025

Thank you for letting us know @thompsonmj

hm, sounds like a bug, let me investigate

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