From bdce7c437454ccc6034df20d1be0b293196d9a1a Mon Sep 17 00:00:00 2001 From: Luke Maurits Date: Sat, 11 Mar 2017 12:00:42 +1300 Subject: [PATCH] Bibliography clean up: consistent abbreviation of journal names, use of initials and not first names throughout, make sure all accented characters in names are escaped properly, etc., etc. Fun way to spend a Saturday morning. --- bibliography.bib | 110 +++++++++++++++++++++++------------------------ 1 file changed, 55 insertions(+), 55 deletions(-) diff --git a/bibliography.bib b/bibliography.bib index 5ac9db9..823b58e 100644 --- a/bibliography.bib +++ b/bibliography.bib @@ -7,17 +7,17 @@ @Article{Bouckaert2016 Author = {Bouckaert, R.}, Journal = {PeerJ}, Year = {2016}, - Note = {https://doi.org/10.7717/peerj.2406}, Volume = {4:e2406}, + Doi = {https://doi.org/10.7717/peerj.2406}, Owner = {luke}, Timestamp = {2016.10.05} } @Article{Bouckaert2014, Title = {{BEAST} 2: A Software Platform for {B}ayesian Evolutionary Analysis}, - Author = {Remco Bouckaert and Joseph Heled and Denise K\"{u}hnert and Tim Vaughan and Chieh-Hsi Wu and Dong Xie and Marc A. Suchard and Andrew Rambaut and Alexei J. Drummond}, - Journal = {PLoS Computational Biology}, + Author = {Bouckaert, R. and Heled, J. and K\"{u}hnert, D. and Vaughan, T. and Wu, C.-H. and Xie, D. and Suchard, M. A. and Rambaut, A. and Drummond, A. J.}, + Journal = {PLoS Comput Biol}, Year = {2014}, Number = {4}, Volume = {10}, @@ -41,7 +41,7 @@ @Article{Bouckaert2012 @Article{Bowern2012, Title = {Computational phylogenetics and the internal structure of {P}ama-{N}yungan}, - Author = {Bowern, Claire and Atkinson, Quentin}, + Author = {Bowern, C. and Atkinson, Q.D.}, Journal = {Language}, Year = {2012}, @@ -56,7 +56,7 @@ @Article{Bowern2012 @Article{Chang2015, Title = {Ancestry-constrained phylogenetic analysis supports the {I}ndo-{E}uropean steppe hypothesis}, - Author = {Chang, Will and Cathcart, Chundra and Hall, David and Garrett, Andrew}, + Author = {Chang, W. and Cathcart, C. and Hall, D. and Garrett, A.}, Journal = {Language}, Year = {2015}, Number = {1}, @@ -69,8 +69,8 @@ @Article{Chang2015 @Article{Currie2013, Title = {Cultural phylogeography of the {B}antu Languages of sub-{S}aharan {A}frica}, - Author = {Currie, Thomas E. and Meade, Andrew and Guillon, Myrtille and Mace, Ruth}, - Journal = {Proceedings of the Royal Society B}, + Author = {Currie, T. E. and Meade, A. and Guillon, M. and Mace, R.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2013}, Month = {July}, @@ -83,8 +83,8 @@ @Article{Currie2013 @Article{Dediu2011, Title = {A {B}ayesian phylogenetic approach to estimating the stability of linguistic features and the genetic biasing of tone}, - Author = {Dan Dediu}, - Journal = {Proceedings of the Royal Society B}, + Author = {Dediu, D.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2011}, Month = {December}, @@ -110,7 +110,7 @@ @Article{Dediu2013 @Article{Drummond2006, Title = {Relaxed Phylogenetics and Dating with Confidence}, Author = {Drummond, A. J. and Ho, S. Y. W. and Phillips, M. J. and Rambaut, A.}, - Journal = {PloS Biology}, + Journal = {PloS Biol}, Year = {2006}, Number = {5}, Volume = {4}, @@ -122,7 +122,7 @@ @Article{Drummond2006 @Article{Drummond2010, Title = {Bayesian random local clocks, or one rate to rule them all}, Author = {Drummond, A. J. and Suchard, M. A.}, - Journal = {BMC Biology}, + Journal = {BMC Biol}, Year = {2010}, Number = {114}, Volume = {8}, @@ -134,7 +134,7 @@ @Article{Drummond2010 @Article{Drummond2012, Title = {Bayesian phylogenetics with {BEAU}ti and the {BEAST} 1.7}, Author = {Drummond, A. J. and Suchard, M. A. and Xie, D. and Rambaut, A.}, - Journal = {Molecular Biology And Evolution}, + Journal = {Mol Biol Evol}, Year = {2012}, Pages = {1969-1973}, Volume = {29}, @@ -145,8 +145,8 @@ @Article{Drummond2012 @Electronic{Dryer2013, Title = {The {W}orld {A}tlas of {L}anguage {S}tructures {O}nline. {L}eipzig: {M}ax {P}lanck {I}nstitute for {E}volutionary {A}nthropology.}, - Author = {Dryer, Matthew S. and Haspelmath, Martin}, - Note = {\url{http://wals.info}}, + Author = {Dryer, M. S. and Haspelmath, M.}, + Note = {Available from \url{http://wals.info}}, Year = {2013}, Owner = {luke}, @@ -155,7 +155,7 @@ @Electronic{Dryer2013 @Article{Dunn2011a, Title = {Aslian linguistic prehistory: A case study in computational phylogenetics}, - Author = {Dunn, Michael and Burenhult, Niclas and Kruspe, Nicole and Tufvesson, Sylvia and Becker, Neele}, + Author = {Dunn, M. and Burenhult, N. and Kruspe, N. and Tufvesson, S. and Becker, N.}, Journal = {Diachronica}, Year = {2011}, Number = {3}, @@ -181,9 +181,9 @@ @Article{Dunn2011 @Electronic{Forkel2016, Title = {{CLDF}: {B}aseline for first experiments}, Author = {Forkel, R. and List, J.-M.}, - Note = {DOI: \texttt{10.5281/zenodo.46705}}, Year = {2016}, + Doi = {10.5281/zenodo.46705}, Owner = {luke}, Timestamp = {2016.03.01} } @@ -227,7 +227,7 @@ @Article{Gray2009 @Article{Greenhill2010, Title = {The shape and tempo of language evolution}, Author = {S. J. Greenhill and Q. D. Atkinson and A. Meade and R. D. Gray}, - Journal = {Proceedings of the Royal Society of London B: Biological Sciences}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2010}, Number = {1693}, Pages = {2443-2450}, @@ -239,8 +239,8 @@ @Article{Greenhill2010 @Article{Grollemund2015, Title = {Bantu expansion shows that habitat alters the route and pace of human dispersals}, - Author = {Grollemund, Rebecca and Branford, Simon and Bostoen, Koen and Meade, Andrew and Venditti, Chris and Pagel, Mark}, - Journal = {Proceedings of the National Academy of Sciences of the United States of America}, + Author = {Grollemund, R. and Branford, S. and Bostoen, K. and Meade, A. and Venditti, C. and Pagel, M.}, + Journal = {Proc Natl Acad Sci U S A}, Year = {2015}, Month = {October}, @@ -254,12 +254,12 @@ @Article{Grollemund2015 @InProceedings{Hammarstroem2014, Title = {Principles on Macro-Areas in Linguistic Typology}, - Author = {Hammarström, Harald and Donohue, Mark}, + Author = {Hammarstr\"{o}m, H. and Donohue, M.}, Booktitle = {Quantitative Approaches to Areal Linguistic Typology (Language Dynamics \& Change Special Issue)}, Year = {2014}, Address = {Leiden}, - Editor = {Hammarström, Harald and Michael, Lev}, + Editor = {Hammarstr\"{o}m, H. and Michael, L.}, Pages = {167-187}, Publisher = {Brill}, @@ -269,10 +269,11 @@ @InProceedings{Hammarstroem2014 @Electronic{Hammarstroem2016, Title = {Glottolog 2.7, {J}ena: {M}ax {P}lanck {I}nstitute for the {S}cience of {H}uman {H}istory}, - Author = {Hammarström, Harald and Forkel, Robert and Haspelmath, Martin and Bank, Sebastian}, - Note = {\url{http://glottolog.org}, DOI \texttt{10.5281/zenodo.46846}}, + Author = {Hammarstr\"{o}m, H. and Forkel, R. and Haspelmath, M. and Bank, S.}, + Note = {Available from \url{http://glottolog.org}}, Year = {2016}, + Doi = {10.5281/zenodo.46846}, Owner = {luke}, Timestamp = {2016.03.03} } @@ -280,7 +281,7 @@ @Electronic{Hammarstroem2016 @Article{Heled2011, Title = {Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation}, Author = {Heled, J. and Drummond, A. J.}, - Journal = {Systematic Biology}, + Journal = {Syst. Biol.}, Year = {2011}, Number = {1}, Pages = {138-149}, @@ -292,8 +293,8 @@ @Article{Heled2011 @Article{Honkola2013, Title = {Cultural and climatic changes shape the evolutionary history of the {U}ralic languages}, - Author = {Honkola, T. and Vesakoski, O. and Korhonen K. and Lehtinen, J. and Syrjänen, K. and Wahlberg, N.}, - Journal = {Journal of Evolutionary Biology}, + Author = {Honkola, T. and Vesakoski, O. and Korhonen K. and Lehtinen, J. and Syrj\"{a}nen, K. and Wahlberg, N.}, + Journal = {J Evol Biol}, Year = {2013}, Number = {6}, Pages = {1244-1253}, @@ -318,7 +319,7 @@ @Article{Huelsenbeck2001 @Article{Kingman1982, Title = {The coalescent}, Author = {Kingman, J. F. C.}, - Journal = {Stochastic Processes and their Applications}, + Journal = {Stoch Process Their Appl}, Year = {1982}, Number = {3}, Pages = {235-248}, @@ -330,8 +331,8 @@ @Article{Kingman1982 @Article{Kitchen2009, Title = {Bayesian phylogenetic analysis of {S}emitic languages identifies an {E}arly {B}ronze {A}ge origin of {S}emitic in the {N}ear {E}ast}, - Author = {Kitchen, Andrew and Ehret, Christopher and Assefa, Shiferaw and Mulligan, Connie J.}, - Journal = {Proceedings of the Royal Society B}, + Author = {Kitchen, A. and Ehret, C. and Assefa, S. and Mulligan, C. J.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2009}, Number = {1668}, Volume = {276}, @@ -342,8 +343,8 @@ @Article{Kitchen2009 @Electronic{Kortmann2013, Title = {({E}ds.) {T}he {E}lectronic {W}orld {A}tlas of {V}arieties of {E}nglish. {L}eipzig: {M}ax {P}lanck {I}nstitute for {E}volutionary {A}nthropology.}, - Author = {Kortmann, Bernd and Lunkenheimer, Kerstin}, - Note = {\url{http://ewave-atlas.org}}, + Author = {Kortmann, B. and Lunkenheimer, K.}, + Note = {Available from \url{http://ewave-atlas.org}}, Year = {2013}, Owner = {luke}, @@ -352,8 +353,8 @@ @Electronic{Kortmann2013 @Article{Lee2011, Title = {Bayesian phylogenetic analysis supports an agricultural origin of {J}aponic languages}, - Author = {Lee, Sean and Hasegawa, Toshikazu}, - Journal = {Proceedings of the Royal Society B}, + Author = {Lee, S. and Hasegawa, T.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2011}, Month = {November}, @@ -366,8 +367,8 @@ @Article{Lee2011 @Article{Lewis2001, Title = {A likelihood approach to estimating phylogeny from discrete morphological character data}, - Author = {Lewis, Paul O.}, - Journal = {Systematic biology}, + Author = {Lewis, P. O.}, + Journal = {Syst Biol}, Year = {2001}, Number = {6}, Pages = {913-925}, @@ -379,7 +380,7 @@ @Article{Lewis2001 @PhdThesis{List2014, Title = {Sequence comparison in historical linguistics}, - Author = {List, Johann-Mattis}, + Author = {List, J.-M.}, School = {Heinrich Heine University D\"{u}sseldorf}, Year = {2014}, @@ -391,16 +392,16 @@ @Electronic{List2014a Title = {Supplementary Material for ``{S}equence Comparison in Historical Linguistics''}, Author = {List, J.-M.}, Month = {Sept.}, - Note = {\url{https://zenodo.org/record/11877}}, Year = {2014}, + Doi = {https://zenodo.org/record/11877}, Owner = {luke}, Timestamp = {2016.02.26} } @Article{List2015, Title = {Concepticon. A resource for the linking of concept lists}, - Author = {List, Johann-Mattis and Cysouw, Michael and Forkel, Robert}, + Author = {List, J.-M. and Cysouw, M. and Forkel, R.}, Journal = {Proceedings of the Ninth International Conference on Language Resources and Evaluation}, Year = {2016}, Note = {(to appear). \url{http://concepticon.clld.org}}, @@ -413,10 +414,9 @@ @Electronic{List2016 Title = {Ling{P}y. {A} {P}ython library for historical linguistics}, Address = {Jena}, - Author = {List, Johann-Mattis and Forkel, Robert}, + Author = {List, J.-M. and Forkel, R.}, Month = {May}, - Note = {With contributions by Steven Moran, Peter Bouda, Johannes Dellert, Taraka Rama, Frank Nagel, and Simon Greenhill.}, - Url = {http://lingpy.org}, + Note = {With contributions by Steven Moran, Peter Bouda, Johannes Dellert, Taraka Rama, Frank Nagel, and Simon Greenhill. Available from \url{http://lingpy.org}}, Year = {2016}, Doi = {https://zenodo.org/badge/latestdoi/5137/lingpy/lingpy}, @@ -427,8 +427,8 @@ @Electronic{List2016 @Article{Maddison1997, Title = {Nexus: An Extensible File Format for Systematic Information}, - Author = {Maddison, David R. and Swofford, David L. and Maddison, Wayne P.}, - Journal = {Systematic Biology}, + Author = {Maddison, D. R. and Swofford, D. L. and Maddison, W. P.}, + Journal = {Syst Biol}, Year = {1997}, Number = {4}, Pages = {590-621}, @@ -450,8 +450,8 @@ @Book{Muysken2008 @Electronic{Muysken2014, Title = {South {A}merican {I}ndigenous {L}anguage {S}tructures ({SAILS}) {O}nline. {L}eipzig: {M}ax {P}lanck {I}nstitute for {E}volutionary {A}nthropology}, - Author = {Pieter Muysken and Harald Hammarström and Olga Krasnoukhova and Neele Müller and Joshua Birchall and Simon van de Kerke and Loretta O'Connor and Swintha Danielsen and Rik van Gijn and George Saad}, - Note = {\url{http://sails.clld.org}}, + Author = {P. Muysken and H. Hammarstr\"{o}m and O. Krasnoukhova and N. M\"{u}ller and J. Birchall and S. van de Kerke and L. O'Connor and S. Danielsen and R. van Gijn and G. Saad}, + Note = {Available from \url{http://sails.clld.org}}, Year = {2014}, Owner = {luke}, @@ -460,8 +460,8 @@ @Electronic{Muysken2014 @Article{Nelson-Sathi2010, Title = {Networks uncover hidden lexical borrowing in {I}ndo-{E}uropean language evolution}, - Author = {Nelson-Sathi, Shijulal and List, Johann-Mattis and Geisler, Hans and Fangerau, Heiner and Gray, Russell D. and Martin, William and Dagan, Tal}, - Journal = {Proc. R. Soc. B}, + Author = {Nelson-Sathi, S. and List, J.-M. and Geisler, H. and Fangerau, H. and Gray, R. D. and Martin, W. and Dagan, T.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2010}, Doi = {10.1098/rspb.2010.1917}, @@ -483,7 +483,7 @@ @InBook{Nicholls2006 @Article{Pagel2007, Title = {Frequency of word-use predicts rates of lexical evolution throughout {I}ndo-{E}uropean history}, - Author = {Mark Pagel and Quentin D. Atkinson and Andrew Meade}, + Author = {M. Pagel and Q. D. Atkinson and A. Meade}, Journal = {Nature}, Year = {2007}, Pages = {717-720}, @@ -496,7 +496,7 @@ @Article{Pagel2007 @Article{Pagel2004, Title = {Bayesian Estimation of Ancestral Character States on Phylogenies}, Author = {Pagel, M. and Meade, A. and Barker, D.}, - Journal = {Systematic Biology}, + Journal = {Syst Biol}, Year = {2004}, Pages = {673-684}, Volume = {53}, @@ -508,7 +508,7 @@ @Article{Pagel2004 @Article{Penny2001, Title = {Mathematical elegance with biochemical realism: the covarion model of molecular evolution}, Author = {Penny, D. and McComish, B. J. and Charleston, M. A. and Hendy, M. D.}, - Journal = {Journal of Molecular Evolution}, + Journal = {J Mol Evol}, Year = {2001}, Number = {6}, Pages = {711–723}, @@ -532,7 +532,7 @@ @Article{Ronquist2003 @Article{Sicoli2014, Title = {Linguistic Phylogenies Support Back-Migration from {B}eringia to {A}sia}, - Author = {Sicoli, Mark A. and Holton, Gary}, + Author = {Sicoli, M. A. and Holton, G.}, Journal = {PLoS ONE}, Year = {2014}, Number = {3}, @@ -545,7 +545,7 @@ @Article{Sicoli2014 @Electronic{Starostin2008, Title = {({E}d.) {T}ower of {B}abel. {A}n etymological database project}, Author = {Starostin, G.}, - Note = {\url{http://starling.rinet.ru}}, + Note = {Available from \url{http://starling.rinet.ru}}, Year = {2008}, Owner = {luke}, @@ -568,7 +568,7 @@ @InBook{Starostin2007 @Article{Swadesh1955, Title = {Towards greater accuracy in lexicostatistic dating}, - Author = {Swadesh, Morris}, + Author = {Swadesh, M.}, Journal = {International Journal of American Linguistics}, Year = {1955}, Number = {2}, @@ -582,7 +582,7 @@ @Article{Swadesh1955 @Article{Walker2011, Title = {Bayesian phylogeography of the {A}rawak expansion in lowland {S}outh {A}merica}, Author = {Walker, R. S. and Ribeiro, L. A.}, - Journal = {Proceedings of the {R}oyal {S}ociety {B}: {B}iological {S}ciences.}, + Journal = {Proc R Soc Lond B Biol Sci}, Year = {2011}, Number = {1718}, Pages = {2562-2567}, @@ -595,7 +595,7 @@ @Article{Walker2011 @Article{Yule1924, Title = {A mathematical theory of evolution based on the conclusions of {D}r {J}. {c}. {W}illis}, Author = {Yule, G. U.}, - Journal = {Philosophical Transactions of the Royal Society B}, + Journal = {Philos Trans R Soc Lond B Biol Sci}, Year = {1924}, Pages = {21–87}, Volume = {213},