diff --git a/README.md b/README.md index 55fd30d..954d60c 100755 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ Visit our web site : http://frogs.toulouse.inrae.fr/ -[![Release](https://img.shields.io/badge/release-4.1.0-blue.svg)![Date](https://img.shields.io/badge/date-March%202023-red.svg)](https://github.com/geraldinepascal/FROGS-wrappers/releases) [](https://www.deezer.com/fr/playlist/5233843102?utm_source=deezer&utm_content=playlist-5233843102&utm_term=18632989_1545296531&utm_medium=web) +[![Release](https://img.shields.io/badge/release-5.0.0-blue.svg)![Date](https://img.shields.io/badge/date-June%202024-red.svg)](https://github.com/geraldinepascal/FROGS-wrappers/releases) [](https://www.deezer.com/fr/playlist/5233843102?utm_source=deezer&utm_content=playlist-5233843102&utm_term=18632989_1545296531&utm_medium=web) @@ -105,7 +105,7 @@ FROGS relies on different specific tools for each of the analysis steps. | Denoising and Remove_chimera | [vsearch](https://github.com/torognes/vsearch) | 2.17.0 | | Denoising | [flash](https://sourceforge.net/projects/flashpage/files/) (optional) | 1.2.11 | | Denoising | [cutadapt](https://github.com/marcelm/cutadapt) (need to be >=2.8) | 2.10 | -| Denoising | [swarm](https://github.com/torognes/swarm) (need to be >=2.1) | 3.0.0 | +| Denoising | [swarm](https://github.com/torognes/swarm) (need to be >=2.1) | 3.1.4 | | Denoising | [DADA2](https://benjjneb.github.io/dada2/index.html) | 1.22.0 | | ITSx | [ITSx](http://microbiology.se/software/itsx/) | 1.1.2 | | Taxonomic_affiliation | [NCBI BLAST+](http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download) | 2.10 | @@ -124,7 +124,7 @@ FROGS relies on different specific tools for each of the analysis steps. If you work in an academic lab on a private Galaxy server, or if you have paid your license you can use PEAR in FROGS preprocess. For that you need to: -- have PEAR in your PATH or in the FROGS libexec directory. We have tested PEAR 0.9.10 version (last version 0.9.11). +- have PEAR in your PATH or in the FROGS libexec directory. We have tested PEAR 0.9.11 version. - use `--merge-software pear` option in the preprocess.py command line ## FROGS and dependencies installation @@ -224,7 +224,6 @@ Step frogsfunc_placeseqs jeu. 02 mai 2024 18:32:19 CEST Step frogsfunc_functions jeu. 02 mai 2024 18:33:49 CEST Step frogsfunc_pathways jeu. 02 mai 2024 18:36:32 CEST Completed with success -Completed with success ```