README.md

challengeABM

An Agent Based Model (ABM) simulating within-host virus dynamics and between host transmission. Functions provide scenarios for a room-to-room challenge experiment and virus introduction to a cattle herd.

This work is in draft form, has not been verified, and is subject to change.

Room-to-Room Overview:

https://github.com/geoepi/challengeABM/blob/main/articles/room_to_room_transmission.md

Within Herd Overview:

https://github.com/geoepi/challengeABM/blob/main/articles/within_herd_transmission.md

Simplified Room-to-Rooom ShinyApp:

https://geoepi.shinyapps.io/fmdv-preclinical/

Install:

library(remotes)
remotes::install_github("geoepi/challengeABM")