From 2933b3fbedce052f0536a1ffce60bad6dbe03362 Mon Sep 17 00:00:00 2001 From: <> Date: Tue, 16 Jul 2024 22:11:22 +0000 Subject: [PATCH] Deployed 07c8afe with MkDocs version: 1.6.0 --- evidence/index.html | 30 +++---- id/index.html | 66 ++++++++-------- label/index.html | 56 ++++++------- obsolete/index.html | 56 ++++++------- provenances/index.html | 44 +++++------ search/search_index.json | 2 +- sitemap.xml | 166 +++++++++++++++++++-------------------- sitemap.xml.gz | Bin 808 -> 807 bytes term/index.html | 30 +++---- type/index.html | 96 +++++++++++----------- 10 files changed, 273 insertions(+), 273 deletions(-) diff --git a/evidence/index.html b/evidence/index.html index 5d87947..48b1fb1 100644 --- a/evidence/index.html +++ b/evidence/index.html @@ -331,23 +331,23 @@

Applicable Classes

-MoleculeAssociation -An association between an activity and a molecule term +TermAssociation +An association between an activity and a term, potentially with extensions no -GrossAnatomyAssociation -An association between an activity and a gross anatomical structure term +BiologicalProcessAssociation +An association between an activity and a biological process term no -TermAssociation -An association between an activity and a term, potentially with extensions +GrossAnatomyAssociation +An association between an activity and a gross anatomical structure term no -CellularAnatomicalEntityAssociation -An association between an activity and a cellular anatomical entity term +CausalAssociation +A causal association between two activities no @@ -356,13 +356,18 @@

Applicable Classes

no +CellularAnatomicalEntityAssociation +An association between an activity and a cellular anatomical entity term +no + + Association An abstract grouping for different kinds of evidence-associated provenance no -BiologicalProcessAssociation -An association between an activity and a biological process term +MoleculeAssociation +An association between an activity and a molecule term no @@ -370,11 +375,6 @@

Applicable Classes

An association between an activity and a cell type term no - -CausalAssociation -A causal association between two activities -no -

Properties

diff --git a/id/index.html b/id/index.html index 766479a..27219d0 100644 --- a/id/index.html +++ b/id/index.html @@ -318,38 +318,33 @@

Applicable Classes

-Object -An abstract class for all identified objects in a model -no - - Model A model of a biological program consisting of a set of causally connected act... no -InformationBiomacromoleculeTermObject -An abstract class for all information biomacromolecule term objects +CellTypeTermObject +A term object that represents a cell type term from CL no -Activity -An individual activity in a causal model, representing the individual molecul... +GrossAnatomicalStructureTermObject +A term object that represents a gross anatomical structure term from UBERON no -CellularAnatomicalEntityTermObject -A term object that represents a cellular anatomical entity term from GO +PhaseTermObject +A term object that represents a phase term from GO or UBERON no -TermObject -An abstract class for all ontology term objects +TaxonTermObject +A term object that represents a taxon term from NCBITaxon no -CellTypeTermObject -A term object that represents a cell type term from CL +GeneProductTermObject +A term object that represents a gene product term from GO or UniProtKB no @@ -358,18 +353,23 @@

Applicable Classes

no -ProteinComplexTermObject -A term object that represents a protein complex term from GO +TermObject +An abstract class for all ontology term objects no -EvidenceTermObject -A term object that represents an evidence term from ECO +InformationBiomacromoleculeTermObject +An abstract class for all information biomacromolecule term objects no -GeneProductTermObject -A term object that represents a gene product term from GO or UniProtKB +ProteinComplexTermObject +A term object that represents a protein complex term from GO +no + + +Activity +An individual activity in a causal model, representing the individual molecul... no @@ -378,33 +378,33 @@

Applicable Classes

no -MoleculeTermObject -A term object that represents a molecule term from CHEBI or UniProtKB +EvidenceTermObject +A term object that represents an evidence term from ECO no -TaxonTermObject -A term object that represents a taxon term from NCBITaxon +PublicationObject +An object that represents a publication or other kind of reference no -GrossAnatomicalStructureTermObject -A term object that represents a gross anatomical structure term from UBERON +MoleculeTermObject +A term object that represents a molecule term from CHEBI or UniProtKB no -PublicationObject -An object that represents a publication or other kind of reference +CellularAnatomicalEntityTermObject +A term object that represents a cellular anatomical entity term from GO no -BiologicalProcessTermObject -A term object that represents a biological process term from GO +Object +An abstract class for all identified objects in a model no -PhaseTermObject -A term object that represents a phase term from GO or UBERON +BiologicalProcessTermObject +A term object that represents a biological process term from GO no diff --git a/label/index.html b/label/index.html index f7f3b19..f92db7c 100644 --- a/label/index.html +++ b/label/index.html @@ -331,28 +331,28 @@

Applicable Classes

-Object -An abstract class for all identified objects in a model +CellTypeTermObject +A term object that represents a cell type term from CL no -InformationBiomacromoleculeTermObject -An abstract class for all information biomacromolecule term objects +GrossAnatomicalStructureTermObject +A term object that represents a gross anatomical structure term from UBERON no -CellularAnatomicalEntityTermObject -A term object that represents a cellular anatomical entity term from GO +PhaseTermObject +A term object that represents a phase term from GO or UBERON no -CellTypeTermObject -A term object that represents a cell type term from CL +TaxonTermObject +A term object that represents a taxon term from NCBITaxon no -TermObject -An abstract class for all ontology term objects +GeneProductTermObject +A term object that represents a gene product term from GO or UniProtKB no @@ -361,18 +361,18 @@

Applicable Classes

no -ProteinComplexTermObject -A term object that represents a protein complex term from GO +TermObject +An abstract class for all ontology term objects no -EvidenceTermObject -A term object that represents an evidence term from ECO +InformationBiomacromoleculeTermObject +An abstract class for all information biomacromolecule term objects no -GeneProductTermObject -A term object that represents a gene product term from GO or UniProtKB +ProteinComplexTermObject +A term object that represents a protein complex term from GO no @@ -381,33 +381,33 @@

Applicable Classes

no -MoleculeTermObject -A term object that represents a molecule term from CHEBI or UniProtKB +EvidenceTermObject +A term object that represents an evidence term from ECO no -TaxonTermObject -A term object that represents a taxon term from NCBITaxon +PublicationObject +An object that represents a publication or other kind of reference no -GrossAnatomicalStructureTermObject -A term object that represents a gross anatomical structure term from UBERON +MoleculeTermObject +A term object that represents a molecule term from CHEBI or UniProtKB no -PublicationObject -An object that represents a publication or other kind of reference +CellularAnatomicalEntityTermObject +A term object that represents a cellular anatomical entity term from GO no -BiologicalProcessTermObject -A term object that represents a biological process term from GO +Object +An abstract class for all identified objects in a model no -PhaseTermObject -A term object that represents a phase term from GO or UBERON +BiologicalProcessTermObject +A term object that represents a biological process term from GO no diff --git a/obsolete/index.html b/obsolete/index.html index ec13185..14a80c4 100644 --- a/obsolete/index.html +++ b/obsolete/index.html @@ -331,28 +331,28 @@

Applicable Classes

-Object -An abstract class for all identified objects in a model +CellTypeTermObject +A term object that represents a cell type term from CL no -InformationBiomacromoleculeTermObject -An abstract class for all information biomacromolecule term objects +GrossAnatomicalStructureTermObject +A term object that represents a gross anatomical structure term from UBERON no -CellularAnatomicalEntityTermObject -A term object that represents a cellular anatomical entity term from GO +PhaseTermObject +A term object that represents a phase term from GO or UBERON no -CellTypeTermObject -A term object that represents a cell type term from CL +TaxonTermObject +A term object that represents a taxon term from NCBITaxon no -TermObject -An abstract class for all ontology term objects +GeneProductTermObject +A term object that represents a gene product term from GO or UniProtKB no @@ -361,18 +361,18 @@

Applicable Classes

no -ProteinComplexTermObject -A term object that represents a protein complex term from GO +TermObject +An abstract class for all ontology term objects no -EvidenceTermObject -A term object that represents an evidence term from ECO +InformationBiomacromoleculeTermObject +An abstract class for all information biomacromolecule term objects no -GeneProductTermObject -A term object that represents a gene product term from GO or UniProtKB +ProteinComplexTermObject +A term object that represents a protein complex term from GO no @@ -381,33 +381,33 @@

Applicable Classes

no -MoleculeTermObject -A term object that represents a molecule term from CHEBI or UniProtKB +EvidenceTermObject +A term object that represents an evidence term from ECO no -TaxonTermObject -A term object that represents a taxon term from NCBITaxon +PublicationObject +An object that represents a publication or other kind of reference no -GrossAnatomicalStructureTermObject -A term object that represents a gross anatomical structure term from UBERON +MoleculeTermObject +A term object that represents a molecule term from CHEBI or UniProtKB no -PublicationObject -An object that represents a publication or other kind of reference +CellularAnatomicalEntityTermObject +A term object that represents a cellular anatomical entity term from GO no -BiologicalProcessTermObject -A term object that represents a biological process term from GO +Object +An abstract class for all identified objects in a model no -PhaseTermObject -A term object that represents a phase term from GO or UBERON +BiologicalProcessTermObject +A term object that represents a biological process term from GO no diff --git a/provenances/index.html b/provenances/index.html index 7fe9cfe..d83d3d5 100644 --- a/provenances/index.html +++ b/provenances/index.html @@ -318,23 +318,18 @@

Applicable Classes

-MoleculeAssociation -An association between an activity and a molecule term -no - - Model A model of a biological program consisting of a set of causally connected act... no -Activity -An individual activity in a causal model, representing the individual molecul... +TermAssociation +An association between an activity and a term, potentially with extensions no -EvidenceItem -An individual piece of evidence that is associated with an assertion in a mod... +BiologicalProcessAssociation +An association between an activity and a biological process term no @@ -343,18 +338,28 @@

Applicable Classes

no -TermAssociation -An association between an activity and a term, potentially with extensions +CausalAssociation +A causal association between two activities no -CellularAnatomicalEntityAssociation -An association between an activity and a cellular anatomical entity term +MolecularFunctionAssociation +An association between an activity and a molecular function term no -MolecularFunctionAssociation -An association between an activity and a molecular function term +Activity +An individual activity in a causal model, representing the individual molecul... +no + + +EvidenceItem +An individual piece of evidence that is associated with an assertion in a mod... +no + + +CellularAnatomicalEntityAssociation +An association between an activity and a cellular anatomical entity term no @@ -363,8 +368,8 @@

Applicable Classes

no -BiologicalProcessAssociation -An association between an activity and a biological process term +MoleculeAssociation +An association between an activity and a molecule term no @@ -372,11 +377,6 @@

Applicable Classes

An association between an activity and a cell type term no - -CausalAssociation -A causal association between two activities -no -

Properties

diff --git a/search/search_index.json b/search/search_index.json index 908fa93..90b8bcb 100644 --- a/search/search_index.json +++ b/search/search_index.json @@ -1 +1 @@ -{"config":{"indexing":"full","lang":["en"],"min_search_length":3,"prebuild_index":false,"separator":"[\\s\\-]+"},"docs":[{"location":"","text":"gocam GO CAM LinkML schema (experimental) The central class in this datamodel is a Model . A model consists of a set of Activity objects. URI: https://w3id.org/gocam Name: gocam Classes Class Description Activity An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model Association An abstract grouping for different kinds of evidence-associated provenance CausalAssociation A causal association between two activities TermAssociation An association between an activity and a term, potentially with extensions BiologicalProcessAssociation An association between an activity and a biological process term CellTypeAssociation An association between an activity and a cell type term CellularAnatomicalEntityAssociation An association between an activity and a cellular anatomical entity term GrossAnatomyAssociation An association between an activity and a gross anatomical structure term MolecularFunctionAssociation An association between an activity and a molecular function term MoleculeAssociation An association between an activity and a molecule term EvidenceItem An individual piece of evidence that is associated with an assertion in a model Model A model of a biological program consisting of a set of causally connected activities Object An abstract class for all identified objects in a model PublicationObject An object that represents a publication or other kind of reference TermObject An abstract class for all ontology term objects BiologicalProcessTermObject A term object that represents a biological process term from GO CellTypeTermObject A term object that represents a cell type term from CL CellularAnatomicalEntityTermObject A term object that represents a cellular anatomical entity term from GO EvidenceTermObject A term object that represents an evidence term from ECO GrossAnatomicalStructureTermObject A term object that represents a gross anatomical structure term from UBERON InformationBiomacromoleculeTermObject An abstract class for all information biomacromolecule term objects GeneProductTermObject A term object that represents a gene product term from GO or UniProtKB ProteinComplexTermObject A term object that represents a protein complex term from GO MolecularFunctionTermObject A term object that represents a molecular function term from GO MoleculeTermObject A term object that represents a molecule term from CHEBI or UniProtKB PhaseTermObject A term object that represents a phase term from GO or UBERON PredicateTermObject A term object that represents a taxon term from NCBITaxon TaxonTermObject A term object that represents a taxon term from NCBITaxon ProvenanceInfo Provenance information for an object Slots Slot Description abstract_text activities All of the activities that are part of the model causal_associations The causal associations that connect this activity to other activities comments Comments about the model contributor created date downstream_activity The activity unit that is downstream of this one enabled_by The gene product or complex that carries out the activity evidence full_text has_direct_input The input molecules that are directly consumed by the activity id The identifier of the model label molecular_function The molecular function that is carried out by the gene product or complex objects All of the objects that are part of the model obsolete occurs_in The cellular location in which the activity occurs part_of The larger biological process in which the activity is a part predicate The RO relation that represents the type of relationship provenances Model-level provenance information provided_by reference The publication of reference that describes the evidence status The status of the model taxon The primary taxon that the model is about term The ECO term representing the type of evidence title The human-readable descriptive title of the model type with_objects Supporting database entities or terms Enumerations Enumeration Description CausalPredicateEnum InformationBiomacromoleculeCategory ModelStateEnum Status of a model Types Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE Subsets Subset Description","title":"Index"},{"location":"#gocam","text":"GO CAM LinkML schema (experimental) The central class in this datamodel is a Model . A model consists of a set of Activity objects. URI: https://w3id.org/gocam Name: gocam","title":"gocam"},{"location":"#classes","text":"Class Description Activity An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model Association An abstract grouping for different kinds of evidence-associated provenance CausalAssociation A causal association between two activities TermAssociation An association between an activity and a term, potentially with extensions BiologicalProcessAssociation An association between an activity and a biological process term CellTypeAssociation An association between an activity and a cell type term CellularAnatomicalEntityAssociation An association between an activity and a cellular anatomical entity term GrossAnatomyAssociation An association between an activity and a gross anatomical structure term MolecularFunctionAssociation An association between an activity and a molecular function term MoleculeAssociation An association between an activity and a molecule term EvidenceItem An individual piece of evidence that is associated with an assertion in a model Model A model of a biological program consisting of a set of causally connected activities Object An abstract class for all identified objects in a model PublicationObject An object that represents a publication or other kind of reference TermObject An abstract class for all ontology term objects BiologicalProcessTermObject A term object that represents a biological process term from GO CellTypeTermObject A term object that represents a cell type term from CL CellularAnatomicalEntityTermObject A term object that represents a cellular anatomical entity term from GO EvidenceTermObject A term object that represents an evidence term from ECO GrossAnatomicalStructureTermObject A term object that represents a gross anatomical structure term from UBERON InformationBiomacromoleculeTermObject An abstract class for all information biomacromolecule term objects GeneProductTermObject A term object that represents a gene product term from GO or UniProtKB ProteinComplexTermObject A term object that represents a protein complex term from GO MolecularFunctionTermObject A term object that represents a molecular function term from GO MoleculeTermObject A term object that represents a molecule term from CHEBI or UniProtKB PhaseTermObject A term object that represents a phase term from GO or UBERON PredicateTermObject A term object that represents a taxon term from NCBITaxon TaxonTermObject A term object that represents a taxon term from NCBITaxon ProvenanceInfo Provenance information for an object","title":"Classes"},{"location":"#slots","text":"Slot Description abstract_text activities All of the activities that are part of the model causal_associations The causal associations that connect this activity to other activities comments Comments about the model contributor created date downstream_activity The activity unit that is downstream of this one enabled_by The gene product or complex that carries out the activity evidence full_text has_direct_input The input molecules that are directly consumed by the activity id The identifier of the model label molecular_function The molecular function that is carried out by the gene product or complex objects All of the objects that are part of the model obsolete occurs_in The cellular location in which the activity occurs part_of The larger biological process in which the activity is a part predicate The RO relation that represents the type of relationship provenances Model-level provenance information provided_by reference The publication of reference that describes the evidence status The status of the model taxon The primary taxon that the model is about term The ECO term representing the type of evidence title The human-readable descriptive title of the model type with_objects Supporting database entities or terms","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description CausalPredicateEnum InformationBiomacromoleculeCategory ModelStateEnum Status of a model","title":"Enumerations"},{"location":"#types","text":"Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE","title":"Types"},{"location":"#subsets","text":"Subset Description","title":"Subsets"},{"location":"Activity/","text":"Class: Activity An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model URI: gocam:Activity classDiagram class Activity click Activity href \"../Activity\" Activity : causal_associations Activity --> \"*\" CausalAssociation : causal_associations click CausalAssociation href \"../CausalAssociation\" Activity : enabled_by Activity --> \"0..1\" InformationBiomacromoleculeTermObject : enabled_by click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" Activity : has_direct_input Activity --> \"0..1\" MoleculeAssociation : has_direct_input click MoleculeAssociation href \"../MoleculeAssociation\" Activity : id Activity : molecular_function Activity --> \"0..1\" MolecularFunctionAssociation : molecular_function click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" Activity : occurs_in Activity --> \"0..1\" CellularAnatomicalEntityAssociation : occurs_in click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" Activity : part_of Activity --> \"0..1\" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" Activity : provenances Activity --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Identifier of the activity unit direct enabled_by 0..1 InformationBiomacromoleculeTermObject The gene product or complex that carries out the activity direct molecular_function 0..1 MolecularFunctionAssociation The molecular function that is carried out by the gene product or complex direct occurs_in 0..1 CellularAnatomicalEntityAssociation The cellular location in which the activity occurs direct part_of 0..1 BiologicalProcessAssociation The larger biological process in which the activity is a part direct has_direct_input 0..1 MoleculeAssociation The input molecules that are directly consumed by the activity direct causal_associations * CausalAssociation The causal associations that connect this activity to other activities direct provenances * ProvenanceInfo Provenance information for the activity direct Usages used by used in type used Model activities range Activity CausalAssociation downstream_activity range Activity Aliases annoton Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Activity native gocam:Activity LinkML Source Direct name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true alias: id owner: Activity domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 alias: enabled_by owner: Activity domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 alias: molecular_function owner: Activity domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 alias: occurs_in owner: Activity domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 alias: part_of owner: Activity domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 alias: has_direct_input owner: Activity domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: causal_associations owner: Activity domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Activity domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: Activity"},{"location":"Activity/#class-activity","text":"An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model URI: gocam:Activity classDiagram class Activity click Activity href \"../Activity\" Activity : causal_associations Activity --> \"*\" CausalAssociation : causal_associations click CausalAssociation href \"../CausalAssociation\" Activity : enabled_by Activity --> \"0..1\" InformationBiomacromoleculeTermObject : enabled_by click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" Activity : has_direct_input Activity --> \"0..1\" MoleculeAssociation : has_direct_input click MoleculeAssociation href \"../MoleculeAssociation\" Activity : id Activity : molecular_function Activity --> \"0..1\" MolecularFunctionAssociation : molecular_function click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" Activity : occurs_in Activity --> \"0..1\" CellularAnatomicalEntityAssociation : occurs_in click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" Activity : part_of Activity --> \"0..1\" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" Activity : provenances Activity --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\"","title":"Class: Activity"},{"location":"Activity/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Identifier of the activity unit direct enabled_by 0..1 InformationBiomacromoleculeTermObject The gene product or complex that carries out the activity direct molecular_function 0..1 MolecularFunctionAssociation The molecular function that is carried out by the gene product or complex direct occurs_in 0..1 CellularAnatomicalEntityAssociation The cellular location in which the activity occurs direct part_of 0..1 BiologicalProcessAssociation The larger biological process in which the activity is a part direct has_direct_input 0..1 MoleculeAssociation The input molecules that are directly consumed by the activity direct causal_associations * CausalAssociation The causal associations that connect this activity to other activities direct provenances * ProvenanceInfo Provenance information for the activity direct","title":"Slots"},{"location":"Activity/#usages","text":"used by used in type used Model activities range Activity CausalAssociation downstream_activity range Activity","title":"Usages"},{"location":"Activity/#aliases","text":"annoton","title":"Aliases"},{"location":"Activity/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Activity/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Activity/#mappings","text":"Mapping Type Mapped Value self gocam:Activity native gocam:Activity","title":"Mappings"},{"location":"Activity/#linkml-source","text":"","title":"LinkML Source"},{"location":"Activity/#direct","text":"name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Activity/#induced","text":"name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true alias: id owner: Activity domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 alias: enabled_by owner: Activity domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 alias: molecular_function owner: Activity domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 alias: occurs_in owner: Activity domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 alias: part_of owner: Activity domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 alias: has_direct_input owner: Activity domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: causal_associations owner: Activity domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Activity domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"Association/","text":"Class: Association An abstract grouping for different kinds of evidence-associated provenance NOTE : this is an abstract class and should not be instantiated directly URI: gocam:Association classDiagram class Association click Association href \"../Association\" Association <|-- CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- TermAssociation click TermAssociation href \"../TermAssociation\" Association : evidence Association --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" Association : provenances Association --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Association : type Inheritance Association CausalAssociation TermAssociation Slots Name Cardinality and Range Description Inheritance type 0..1 String direct evidence * EvidenceItem direct provenances * ProvenanceInfo direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Association native gocam:Association LinkML Source Direct name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true domain_of: - Association - Object evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: Association domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: Association domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Association domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: Association"},{"location":"Association/#class-association","text":"An abstract grouping for different kinds of evidence-associated provenance NOTE : this is an abstract class and should not be instantiated directly URI: gocam:Association classDiagram class Association click Association href \"../Association\" Association <|-- CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- TermAssociation click TermAssociation href \"../TermAssociation\" Association : evidence Association --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" Association : provenances Association --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Association : type","title":"Class: Association"},{"location":"Association/#inheritance","text":"Association CausalAssociation TermAssociation","title":"Inheritance"},{"location":"Association/#slots","text":"Name Cardinality and Range Description Inheritance type 0..1 String direct evidence * EvidenceItem direct provenances * ProvenanceInfo direct","title":"Slots"},{"location":"Association/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Association/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Association/#mappings","text":"Mapping Type Mapped Value self gocam:Association native gocam:Association","title":"Mappings"},{"location":"Association/#linkml-source","text":"","title":"LinkML Source"},{"location":"Association/#direct","text":"name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true domain_of: - Association - Object evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Association/#induced","text":"name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: Association domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: Association domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Association domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"BiologicalProcessAssociation/","text":"Class: BiologicalProcessAssociation An association between an activity and a biological process term URI: gocam:BiologicalProcessAssociation classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href \"../TermAssociation\" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" BiologicalProcessAssociation : term BiologicalProcessAssociation --> \"0..1\" BiologicalProcessTermObject : term click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" BiologicalProcessAssociation : type Inheritance Association TermAssociation BiologicalProcessAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 BiologicalProcessTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity part_of range BiologicalProcessAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:BiologicalProcessAssociation native gocam:BiologicalProcessAssociation LinkML Source Direct name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject Induced name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: BiologicalProcessAssociation domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: BiologicalProcessAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: BiologicalProcessAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: BiologicalProcessAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: BiologicalProcessAssociation"},{"location":"BiologicalProcessAssociation/#class-biologicalprocessassociation","text":"An association between an activity and a biological process term URI: gocam:BiologicalProcessAssociation classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href \"../TermAssociation\" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" BiologicalProcessAssociation : term BiologicalProcessAssociation --> \"0..1\" BiologicalProcessTermObject : term click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" BiologicalProcessAssociation : type","title":"Class: BiologicalProcessAssociation"},{"location":"BiologicalProcessAssociation/#inheritance","text":"Association TermAssociation BiologicalProcessAssociation","title":"Inheritance"},{"location":"BiologicalProcessAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 BiologicalProcessTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"BiologicalProcessAssociation/#usages","text":"used by used in type used Activity part_of range BiologicalProcessAssociation","title":"Usages"},{"location":"BiologicalProcessAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BiologicalProcessAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"BiologicalProcessAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:BiologicalProcessAssociation native gocam:BiologicalProcessAssociation","title":"Mappings"},{"location":"BiologicalProcessAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"BiologicalProcessAssociation/#direct","text":"name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject","title":"Direct"},{"location":"BiologicalProcessAssociation/#induced","text":"name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: BiologicalProcessAssociation domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: BiologicalProcessAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: BiologicalProcessAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: BiologicalProcessAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"BiologicalProcessTermObject/","text":"Class: BiologicalProcessTermObject A term object that represents a biological process term from GO URI: gocam:BiologicalProcessTermObject classDiagram class BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- BiologicalProcessTermObject click TermObject href \"../TermObject\" BiologicalProcessTermObject : id BiologicalProcessTermObject : label BiologicalProcessTermObject : obsolete BiologicalProcessTermObject : type Inheritance Object TermObject BiologicalProcessTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used BiologicalProcessAssociation term range BiologicalProcessTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:BiologicalProcessTermObject native gocam:BiologicalProcessTermObject LinkML Source Direct name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: BiologicalProcessTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: BiologicalProcessTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: BiologicalProcessTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: BiologicalProcessTermObject domain_of: - Object range: boolean","title":"Class: BiologicalProcessTermObject"},{"location":"BiologicalProcessTermObject/#class-biologicalprocesstermobject","text":"A term object that represents a biological process term from GO URI: gocam:BiologicalProcessTermObject classDiagram class BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- BiologicalProcessTermObject click TermObject href \"../TermObject\" BiologicalProcessTermObject : id BiologicalProcessTermObject : label BiologicalProcessTermObject : obsolete BiologicalProcessTermObject : type","title":"Class: BiologicalProcessTermObject"},{"location":"BiologicalProcessTermObject/#inheritance","text":"Object TermObject BiologicalProcessTermObject","title":"Inheritance"},{"location":"BiologicalProcessTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"BiologicalProcessTermObject/#usages","text":"used by used in type used BiologicalProcessAssociation term range BiologicalProcessTermObject","title":"Usages"},{"location":"BiologicalProcessTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BiologicalProcessTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"BiologicalProcessTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"BiologicalProcessTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:BiologicalProcessTermObject native gocam:BiologicalProcessTermObject","title":"Mappings"},{"location":"BiologicalProcessTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"BiologicalProcessTermObject/#direct","text":"name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"BiologicalProcessTermObject/#induced","text":"name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: BiologicalProcessTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: BiologicalProcessTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: BiologicalProcessTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: BiologicalProcessTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalAssociation/","text":"Class: CausalAssociation A causal association between two activities URI: gocam:CausalAssociation classDiagram class CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- CausalAssociation click Association href \"../Association\" CausalAssociation : downstream_activity CausalAssociation --> \"0..1\" Activity : downstream_activity click Activity href \"../Activity\" CausalAssociation : evidence CausalAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CausalAssociation : predicate CausalAssociation --> \"0..1\" PredicateTermObject : predicate click PredicateTermObject href \"../PredicateTermObject\" CausalAssociation : provenances CausalAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CausalAssociation : type Inheritance Association CausalAssociation Slots Name Cardinality and Range Description Inheritance predicate 0..1 PredicateTermObject The RO relation that represents the type of relationship direct downstream_activity 0..1 Activity The activity unit that is downstream of this one direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity causal_associations range CausalAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CausalAssociation native gocam:CausalAssociation LinkML Source Direct name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 domain_of: - CausalAssociation range: Activity Induced name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 alias: predicate owner: CausalAssociation domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 alias: downstream_activity owner: CausalAssociation domain_of: - CausalAssociation range: Activity type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CausalAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CausalAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CausalAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CausalAssociation"},{"location":"CausalAssociation/#class-causalassociation","text":"A causal association between two activities URI: gocam:CausalAssociation classDiagram class CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- CausalAssociation click Association href \"../Association\" CausalAssociation : downstream_activity CausalAssociation --> \"0..1\" Activity : downstream_activity click Activity href \"../Activity\" CausalAssociation : evidence CausalAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CausalAssociation : predicate CausalAssociation --> \"0..1\" PredicateTermObject : predicate click PredicateTermObject href \"../PredicateTermObject\" CausalAssociation : provenances CausalAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CausalAssociation : type","title":"Class: CausalAssociation"},{"location":"CausalAssociation/#inheritance","text":"Association CausalAssociation","title":"Inheritance"},{"location":"CausalAssociation/#slots","text":"Name Cardinality and Range Description Inheritance predicate 0..1 PredicateTermObject The RO relation that represents the type of relationship direct downstream_activity 0..1 Activity The activity unit that is downstream of this one direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CausalAssociation/#usages","text":"used by used in type used Activity causal_associations range CausalAssociation","title":"Usages"},{"location":"CausalAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CausalAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CausalAssociation native gocam:CausalAssociation","title":"Mappings"},{"location":"CausalAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CausalAssociation/#direct","text":"name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 domain_of: - CausalAssociation range: Activity","title":"Direct"},{"location":"CausalAssociation/#induced","text":"name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 alias: predicate owner: CausalAssociation domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 alias: downstream_activity owner: CausalAssociation domain_of: - CausalAssociation range: Activity type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CausalAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CausalAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CausalAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CausalPredicateEnum/","text":"Enum: CausalPredicateEnum URI: CausalPredicateEnum Permissible Values Value Meaning Description causally upstream of, positive effect RO:0002304 causally upstream of, negative effect RO:0002305 causally upstream of RO:0002411 immediately causally upstream of RO:0002412 causally upstream of or within RO:0002418 causally upstream of or within, negative effect RO:0004046 causally upstream of or within, positive effect RO:0004047 regulates RO:0002211 negatively regulates RO:0002212 positively regulates RO:0002213 Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: CausalPredicateEnum from_schema: https://w3id.org/gocam rank: 1000 permissible_values: causally upstream of, positive effect: text: causally upstream of, positive effect meaning: RO:0002304 causally upstream of, negative effect: text: causally upstream of, negative effect meaning: RO:0002305 causally upstream of: text: causally upstream of meaning: RO:0002411 immediately causally upstream of: text: immediately causally upstream of meaning: RO:0002412 causally upstream of or within: text: causally upstream of or within meaning: RO:0002418 causally upstream of or within, negative effect: text: causally upstream of or within, negative effect meaning: RO:0004046 causally upstream of or within, positive effect: text: causally upstream of or within, positive effect meaning: RO:0004047 regulates: text: regulates meaning: RO:0002211 negatively regulates: text: negatively regulates meaning: RO:0002212 positively regulates: text: positively regulates meaning: RO:0002213","title":"Enum: CausalPredicateEnum"},{"location":"CausalPredicateEnum/#enum-causalpredicateenum","text":"URI: CausalPredicateEnum","title":"Enum: CausalPredicateEnum"},{"location":"CausalPredicateEnum/#permissible-values","text":"Value Meaning Description causally upstream of, positive effect RO:0002304 causally upstream of, negative effect RO:0002305 causally upstream of RO:0002411 immediately causally upstream of RO:0002412 causally upstream of or within RO:0002418 causally upstream of or within, negative effect RO:0004046 causally upstream of or within, positive effect RO:0004047 regulates RO:0002211 negatively regulates RO:0002212 positively regulates RO:0002213","title":"Permissible Values"},{"location":"CausalPredicateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CausalPredicateEnum/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalPredicateEnum/#linkml-source","text":"name: CausalPredicateEnum from_schema: https://w3id.org/gocam rank: 1000 permissible_values: causally upstream of, positive effect: text: causally upstream of, positive effect meaning: RO:0002304 causally upstream of, negative effect: text: causally upstream of, negative effect meaning: RO:0002305 causally upstream of: text: causally upstream of meaning: RO:0002411 immediately causally upstream of: text: immediately causally upstream of meaning: RO:0002412 causally upstream of or within: text: causally upstream of or within meaning: RO:0002418 causally upstream of or within, negative effect: text: causally upstream of or within, negative effect meaning: RO:0004046 causally upstream of or within, positive effect: text: causally upstream of or within, positive effect meaning: RO:0004047 regulates: text: regulates meaning: RO:0002211 negatively regulates: text: negatively regulates meaning: RO:0002212 positively regulates: text: positively regulates meaning: RO:0002213","title":"LinkML Source"},{"location":"CellTypeAssociation/","text":"Class: CellTypeAssociation An association between an activity and a cell type term URI: gocam:CellTypeAssociation classDiagram class CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- CellTypeAssociation click TermAssociation href \"../TermAssociation\" CellTypeAssociation : evidence CellTypeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellTypeAssociation : provenances CellTypeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellTypeAssociation : term CellTypeAssociation --> \"0..1\" CellTypeTermObject : term click CellTypeTermObject href \"../CellTypeTermObject\" CellTypeAssociation : type Inheritance Association TermAssociation CellTypeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 CellTypeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellTypeAssociation native gocam:CellTypeAssociation LinkML Source Direct name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation Induced name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellTypeAssociation domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellTypeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellTypeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellTypeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CellTypeAssociation"},{"location":"CellTypeAssociation/#class-celltypeassociation","text":"An association between an activity and a cell type term URI: gocam:CellTypeAssociation classDiagram class CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- CellTypeAssociation click TermAssociation href \"../TermAssociation\" CellTypeAssociation : evidence CellTypeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellTypeAssociation : provenances CellTypeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellTypeAssociation : term CellTypeAssociation --> \"0..1\" CellTypeTermObject : term click CellTypeTermObject href \"../CellTypeTermObject\" CellTypeAssociation : type","title":"Class: CellTypeAssociation"},{"location":"CellTypeAssociation/#inheritance","text":"Association TermAssociation CellTypeAssociation","title":"Inheritance"},{"location":"CellTypeAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 CellTypeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CellTypeAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellTypeAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellTypeAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CellTypeAssociation native gocam:CellTypeAssociation","title":"Mappings"},{"location":"CellTypeAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellTypeAssociation/#direct","text":"name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation","title":"Direct"},{"location":"CellTypeAssociation/#induced","text":"name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellTypeAssociation domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellTypeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellTypeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellTypeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CellTypeTermObject/","text":"Class: CellTypeTermObject A term object that represents a cell type term from CL URI: gocam:CellTypeTermObject classDiagram class CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- CellTypeTermObject click TermObject href \"../TermObject\" CellTypeTermObject : id CellTypeTermObject : label CellTypeTermObject : obsolete CellTypeTermObject : type Inheritance Object TermObject CellTypeTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CellTypeAssociation term range CellTypeTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: CL PO FAO DDANAT Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellTypeTermObject native gocam:CellTypeTermObject LinkML Source Direct name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject Induced name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellTypeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellTypeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellTypeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellTypeTermObject domain_of: - Object range: boolean","title":"Class: CellTypeTermObject"},{"location":"CellTypeTermObject/#class-celltypetermobject","text":"A term object that represents a cell type term from CL URI: gocam:CellTypeTermObject classDiagram class CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- CellTypeTermObject click TermObject href \"../TermObject\" CellTypeTermObject : id CellTypeTermObject : label CellTypeTermObject : obsolete CellTypeTermObject : type","title":"Class: CellTypeTermObject"},{"location":"CellTypeTermObject/#inheritance","text":"Object TermObject CellTypeTermObject","title":"Inheritance"},{"location":"CellTypeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"CellTypeTermObject/#usages","text":"used by used in type used CellTypeAssociation term range CellTypeTermObject","title":"Usages"},{"location":"CellTypeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellTypeTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: CL PO FAO DDANAT","title":"Valid ID Prefixes"},{"location":"CellTypeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellTypeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:CellTypeTermObject native gocam:CellTypeTermObject","title":"Mappings"},{"location":"CellTypeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellTypeTermObject/#direct","text":"name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"CellTypeTermObject/#induced","text":"name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellTypeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellTypeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellTypeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellTypeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"CellularAnatomicalEntityAssociation/","text":"Class: CellularAnatomicalEntityAssociation An association between an activity and a cellular anatomical entity term URI: gocam:CellularAnatomicalEntityAssociation classDiagram class CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click TermAssociation href \"../TermAssociation\" CellularAnatomicalEntityAssociation : evidence CellularAnatomicalEntityAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellularAnatomicalEntityAssociation : provenances CellularAnatomicalEntityAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellularAnatomicalEntityAssociation : term CellularAnatomicalEntityAssociation --> \"0..1\" CellularAnatomicalEntityTermObject : term click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" CellularAnatomicalEntityAssociation : type Inheritance Association TermAssociation CellularAnatomicalEntityAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 CellularAnatomicalEntityTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity occurs_in range CellularAnatomicalEntityAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellularAnatomicalEntityAssociation native gocam:CellularAnatomicalEntityAssociation LinkML Source Direct name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation Induced name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellularAnatomicalEntityAssociation domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellularAnatomicalEntityAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellularAnatomicalEntityAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellularAnatomicalEntityAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CellularAnatomicalEntityAssociation"},{"location":"CellularAnatomicalEntityAssociation/#class-cellularanatomicalentityassociation","text":"An association between an activity and a cellular anatomical entity term URI: gocam:CellularAnatomicalEntityAssociation classDiagram class CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click TermAssociation href \"../TermAssociation\" CellularAnatomicalEntityAssociation : evidence CellularAnatomicalEntityAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellularAnatomicalEntityAssociation : provenances CellularAnatomicalEntityAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellularAnatomicalEntityAssociation : term CellularAnatomicalEntityAssociation --> \"0..1\" CellularAnatomicalEntityTermObject : term click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" CellularAnatomicalEntityAssociation : type","title":"Class: CellularAnatomicalEntityAssociation"},{"location":"CellularAnatomicalEntityAssociation/#inheritance","text":"Association TermAssociation CellularAnatomicalEntityAssociation","title":"Inheritance"},{"location":"CellularAnatomicalEntityAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 CellularAnatomicalEntityTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CellularAnatomicalEntityAssociation/#usages","text":"used by used in type used Activity occurs_in range CellularAnatomicalEntityAssociation","title":"Usages"},{"location":"CellularAnatomicalEntityAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellularAnatomicalEntityAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellularAnatomicalEntityAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CellularAnatomicalEntityAssociation native gocam:CellularAnatomicalEntityAssociation","title":"Mappings"},{"location":"CellularAnatomicalEntityAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellularAnatomicalEntityAssociation/#direct","text":"name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation","title":"Direct"},{"location":"CellularAnatomicalEntityAssociation/#induced","text":"name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellularAnatomicalEntityAssociation domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellularAnatomicalEntityAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellularAnatomicalEntityAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellularAnatomicalEntityAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CellularAnatomicalEntityTermObject/","text":"Class: CellularAnatomicalEntityTermObject A term object that represents a cellular anatomical entity term from GO URI: gocam:CellularAnatomicalEntityTermObject classDiagram class CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click TermObject href \"../TermObject\" CellularAnatomicalEntityTermObject : id CellularAnatomicalEntityTermObject : label CellularAnatomicalEntityTermObject : obsolete CellularAnatomicalEntityTermObject : type Inheritance Object TermObject CellularAnatomicalEntityTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CellularAnatomicalEntityAssociation term range CellularAnatomicalEntityTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellularAnatomicalEntityTermObject native gocam:CellularAnatomicalEntityTermObject LinkML Source Direct name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellularAnatomicalEntityTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellularAnatomicalEntityTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellularAnatomicalEntityTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellularAnatomicalEntityTermObject domain_of: - Object range: boolean","title":"Class: CellularAnatomicalEntityTermObject"},{"location":"CellularAnatomicalEntityTermObject/#class-cellularanatomicalentitytermobject","text":"A term object that represents a cellular anatomical entity term from GO URI: gocam:CellularAnatomicalEntityTermObject classDiagram class CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click TermObject href \"../TermObject\" CellularAnatomicalEntityTermObject : id CellularAnatomicalEntityTermObject : label CellularAnatomicalEntityTermObject : obsolete CellularAnatomicalEntityTermObject : type","title":"Class: CellularAnatomicalEntityTermObject"},{"location":"CellularAnatomicalEntityTermObject/#inheritance","text":"Object TermObject CellularAnatomicalEntityTermObject","title":"Inheritance"},{"location":"CellularAnatomicalEntityTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"CellularAnatomicalEntityTermObject/#usages","text":"used by used in type used CellularAnatomicalEntityAssociation term range CellularAnatomicalEntityTermObject","title":"Usages"},{"location":"CellularAnatomicalEntityTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellularAnatomicalEntityTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"CellularAnatomicalEntityTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellularAnatomicalEntityTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:CellularAnatomicalEntityTermObject native gocam:CellularAnatomicalEntityTermObject","title":"Mappings"},{"location":"CellularAnatomicalEntityTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellularAnatomicalEntityTermObject/#direct","text":"name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"CellularAnatomicalEntityTermObject/#induced","text":"name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellularAnatomicalEntityTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellularAnatomicalEntityTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellularAnatomicalEntityTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellularAnatomicalEntityTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Date/","text":"Type: Date a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceItem/","text":"Class: EvidenceItem An individual piece of evidence that is associated with an assertion in a model URI: gocam:EvidenceItem classDiagram class EvidenceItem click EvidenceItem href \"../EvidenceItem\" EvidenceItem : provenances EvidenceItem --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" EvidenceItem : reference EvidenceItem --> \"0..1\" PublicationObject : reference click PublicationObject href \"../PublicationObject\" EvidenceItem : term EvidenceItem --> \"0..1\" EvidenceTermObject : term click EvidenceTermObject href \"../EvidenceTermObject\" EvidenceItem : with_objects EvidenceItem --> \"*\" Object : with_objects click Object href \"../Object\" Slots Name Cardinality and Range Description Inheritance term 0..1 EvidenceTermObject The ECO term representing the type of evidence direct reference 0..1 PublicationObject The publication of reference that describes the evidence direct with_objects * Object Supporting database entities or terms direct provenances * ProvenanceInfo Provenance about the assertion, e direct Usages used by used in type used Association evidence range EvidenceItem CausalAssociation evidence range EvidenceItem TermAssociation evidence range EvidenceItem MolecularFunctionAssociation evidence range EvidenceItem BiologicalProcessAssociation evidence range EvidenceItem CellularAnatomicalEntityAssociation evidence range EvidenceItem CellTypeAssociation evidence range EvidenceItem GrossAnatomyAssociation evidence range EvidenceItem MoleculeAssociation evidence range EvidenceItem Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:EvidenceItem native gocam:EvidenceItem LinkML Source Direct name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 alias: term owner: EvidenceItem domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 alias: reference owner: EvidenceItem domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true alias: with_objects owner: EvidenceItem domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: EvidenceItem domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: EvidenceItem"},{"location":"EvidenceItem/#class-evidenceitem","text":"An individual piece of evidence that is associated with an assertion in a model URI: gocam:EvidenceItem classDiagram class EvidenceItem click EvidenceItem href \"../EvidenceItem\" EvidenceItem : provenances EvidenceItem --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" EvidenceItem : reference EvidenceItem --> \"0..1\" PublicationObject : reference click PublicationObject href \"../PublicationObject\" EvidenceItem : term EvidenceItem --> \"0..1\" EvidenceTermObject : term click EvidenceTermObject href \"../EvidenceTermObject\" EvidenceItem : with_objects EvidenceItem --> \"*\" Object : with_objects click Object href \"../Object\"","title":"Class: EvidenceItem"},{"location":"EvidenceItem/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 EvidenceTermObject The ECO term representing the type of evidence direct reference 0..1 PublicationObject The publication of reference that describes the evidence direct with_objects * Object Supporting database entities or terms direct provenances * ProvenanceInfo Provenance about the assertion, e direct","title":"Slots"},{"location":"EvidenceItem/#usages","text":"used by used in type used Association evidence range EvidenceItem CausalAssociation evidence range EvidenceItem TermAssociation evidence range EvidenceItem MolecularFunctionAssociation evidence range EvidenceItem BiologicalProcessAssociation evidence range EvidenceItem CellularAnatomicalEntityAssociation evidence range EvidenceItem CellTypeAssociation evidence range EvidenceItem GrossAnatomyAssociation evidence range EvidenceItem MoleculeAssociation evidence range EvidenceItem","title":"Usages"},{"location":"EvidenceItem/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EvidenceItem/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceItem/#mappings","text":"Mapping Type Mapped Value self gocam:EvidenceItem native gocam:EvidenceItem","title":"Mappings"},{"location":"EvidenceItem/#linkml-source","text":"","title":"LinkML Source"},{"location":"EvidenceItem/#direct","text":"name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"EvidenceItem/#induced","text":"name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 alias: term owner: EvidenceItem domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 alias: reference owner: EvidenceItem domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true alias: with_objects owner: EvidenceItem domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: EvidenceItem domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"EvidenceTermObject/","text":"Class: EvidenceTermObject A term object that represents an evidence term from ECO URI: gocam:EvidenceTermObject classDiagram class EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- EvidenceTermObject click TermObject href \"../TermObject\" EvidenceTermObject : id EvidenceTermObject : label EvidenceTermObject : obsolete EvidenceTermObject : type Inheritance Object TermObject EvidenceTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used EvidenceItem term range EvidenceTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: ECO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:EvidenceTermObject native gocam:EvidenceTermObject LinkML Source Direct name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: EvidenceTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: EvidenceTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: EvidenceTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: EvidenceTermObject domain_of: - Object range: boolean","title":"Class: EvidenceTermObject"},{"location":"EvidenceTermObject/#class-evidencetermobject","text":"A term object that represents an evidence term from ECO URI: gocam:EvidenceTermObject classDiagram class EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- EvidenceTermObject click TermObject href \"../TermObject\" EvidenceTermObject : id EvidenceTermObject : label EvidenceTermObject : obsolete EvidenceTermObject : type","title":"Class: EvidenceTermObject"},{"location":"EvidenceTermObject/#inheritance","text":"Object TermObject EvidenceTermObject","title":"Inheritance"},{"location":"EvidenceTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"EvidenceTermObject/#usages","text":"used by used in type used EvidenceItem term range EvidenceTermObject","title":"Usages"},{"location":"EvidenceTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EvidenceTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: ECO","title":"Valid ID Prefixes"},{"location":"EvidenceTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:EvidenceTermObject native gocam:EvidenceTermObject","title":"Mappings"},{"location":"EvidenceTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"EvidenceTermObject/#direct","text":"name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"EvidenceTermObject/#induced","text":"name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: EvidenceTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: EvidenceTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: EvidenceTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: EvidenceTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GeneProductTermObject/","text":"Class: GeneProductTermObject A term object that represents a gene product term from GO or UniProtKB URI: gocam:GeneProductTermObject classDiagram class GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" GeneProductTermObject : id GeneProductTermObject : label GeneProductTermObject : obsolete GeneProductTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GeneProductTermObject native gocam:GeneProductTermObject LinkML Source Direct name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject Induced name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GeneProductTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GeneProductTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GeneProductTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GeneProductTermObject domain_of: - Object range: boolean","title":"Class: GeneProductTermObject"},{"location":"GeneProductTermObject/#class-geneproducttermobject","text":"A term object that represents a gene product term from GO or UniProtKB URI: gocam:GeneProductTermObject classDiagram class GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" GeneProductTermObject : id GeneProductTermObject : label GeneProductTermObject : obsolete GeneProductTermObject : type","title":"Class: GeneProductTermObject"},{"location":"GeneProductTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject","title":"Inheritance"},{"location":"GeneProductTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"GeneProductTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GeneProductTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GeneProductTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:GeneProductTermObject native gocam:GeneProductTermObject","title":"Mappings"},{"location":"GeneProductTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"GeneProductTermObject/#direct","text":"name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject","title":"Direct"},{"location":"GeneProductTermObject/#induced","text":"name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GeneProductTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GeneProductTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GeneProductTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GeneProductTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"GrossAnatomicalStructureTermObject/","text":"Class: GrossAnatomicalStructureTermObject A term object that represents a gross anatomical structure term from UBERON URI: gocam:GrossAnatomicalStructureTermObject classDiagram class GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click TermObject href \"../TermObject\" GrossAnatomicalStructureTermObject : id GrossAnatomicalStructureTermObject : label GrossAnatomicalStructureTermObject : obsolete GrossAnatomicalStructureTermObject : type Inheritance Object TermObject GrossAnatomicalStructureTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used GrossAnatomyAssociation term range GrossAnatomicalStructureTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: UBERON PO FAO DDANAT Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GrossAnatomicalStructureTermObject native gocam:GrossAnatomicalStructureTermObject LinkML Source Direct name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject Induced name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GrossAnatomicalStructureTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GrossAnatomicalStructureTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GrossAnatomicalStructureTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GrossAnatomicalStructureTermObject domain_of: - Object range: boolean","title":"Class: GrossAnatomicalStructureTermObject"},{"location":"GrossAnatomicalStructureTermObject/#class-grossanatomicalstructuretermobject","text":"A term object that represents a gross anatomical structure term from UBERON URI: gocam:GrossAnatomicalStructureTermObject classDiagram class GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click TermObject href \"../TermObject\" GrossAnatomicalStructureTermObject : id GrossAnatomicalStructureTermObject : label GrossAnatomicalStructureTermObject : obsolete GrossAnatomicalStructureTermObject : type","title":"Class: GrossAnatomicalStructureTermObject"},{"location":"GrossAnatomicalStructureTermObject/#inheritance","text":"Object TermObject GrossAnatomicalStructureTermObject","title":"Inheritance"},{"location":"GrossAnatomicalStructureTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"GrossAnatomicalStructureTermObject/#usages","text":"used by used in type used GrossAnatomyAssociation term range GrossAnatomicalStructureTermObject","title":"Usages"},{"location":"GrossAnatomicalStructureTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GrossAnatomicalStructureTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: UBERON PO FAO DDANAT","title":"Valid ID Prefixes"},{"location":"GrossAnatomicalStructureTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GrossAnatomicalStructureTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:GrossAnatomicalStructureTermObject native gocam:GrossAnatomicalStructureTermObject","title":"Mappings"},{"location":"GrossAnatomicalStructureTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"GrossAnatomicalStructureTermObject/#direct","text":"name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"GrossAnatomicalStructureTermObject/#induced","text":"name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GrossAnatomicalStructureTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GrossAnatomicalStructureTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GrossAnatomicalStructureTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GrossAnatomicalStructureTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"GrossAnatomyAssociation/","text":"Class: GrossAnatomyAssociation An association between an activity and a gross anatomical structure term URI: gocam:GrossAnatomyAssociation classDiagram class GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- GrossAnatomyAssociation click TermAssociation href \"../TermAssociation\" GrossAnatomyAssociation : evidence GrossAnatomyAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" GrossAnatomyAssociation : provenances GrossAnatomyAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" GrossAnatomyAssociation : term GrossAnatomyAssociation --> \"0..1\" GrossAnatomicalStructureTermObject : term click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" GrossAnatomyAssociation : type Inheritance Association TermAssociation GrossAnatomyAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 GrossAnatomicalStructureTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GrossAnatomyAssociation native gocam:GrossAnatomyAssociation LinkML Source Direct name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation Induced name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: GrossAnatomyAssociation domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: GrossAnatomyAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: GrossAnatomyAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: GrossAnatomyAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: GrossAnatomyAssociation"},{"location":"GrossAnatomyAssociation/#class-grossanatomyassociation","text":"An association between an activity and a gross anatomical structure term URI: gocam:GrossAnatomyAssociation classDiagram class GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- GrossAnatomyAssociation click TermAssociation href \"../TermAssociation\" GrossAnatomyAssociation : evidence GrossAnatomyAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" GrossAnatomyAssociation : provenances GrossAnatomyAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" GrossAnatomyAssociation : term GrossAnatomyAssociation --> \"0..1\" GrossAnatomicalStructureTermObject : term click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" GrossAnatomyAssociation : type","title":"Class: GrossAnatomyAssociation"},{"location":"GrossAnatomyAssociation/#inheritance","text":"Association TermAssociation GrossAnatomyAssociation","title":"Inheritance"},{"location":"GrossAnatomyAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 GrossAnatomicalStructureTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"GrossAnatomyAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GrossAnatomyAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GrossAnatomyAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:GrossAnatomyAssociation native gocam:GrossAnatomyAssociation","title":"Mappings"},{"location":"GrossAnatomyAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"GrossAnatomyAssociation/#direct","text":"name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation","title":"Direct"},{"location":"GrossAnatomyAssociation/#induced","text":"name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: GrossAnatomyAssociation domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: GrossAnatomyAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: GrossAnatomyAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: GrossAnatomyAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"InformationBiomacromoleculeCategory/","text":"Enum: InformationBiomacromoleculeCategory URI: InformationBiomacromoleculeCategory Permissible Values Value Meaning Description GeneOrReferenceProtein biolink.GeneOrGeneProduct ProteinIsoform None MacromolecularComplex None Unknown None Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: InformationBiomacromoleculeCategory from_schema: https://w3id.org/gocam rank: 1000 permissible_values: GeneOrReferenceProtein: text: GeneOrReferenceProtein meaning: biolink.GeneOrGeneProduct ProteinIsoform: text: ProteinIsoform MacromolecularComplex: text: MacromolecularComplex Unknown: text: Unknown","title":"Enum: InformationBiomacromoleculeCategory"},{"location":"InformationBiomacromoleculeCategory/#enum-informationbiomacromoleculecategory","text":"URI: InformationBiomacromoleculeCategory","title":"Enum: InformationBiomacromoleculeCategory"},{"location":"InformationBiomacromoleculeCategory/#permissible-values","text":"Value Meaning Description GeneOrReferenceProtein biolink.GeneOrGeneProduct ProteinIsoform None MacromolecularComplex None Unknown None","title":"Permissible Values"},{"location":"InformationBiomacromoleculeCategory/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"InformationBiomacromoleculeCategory/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"InformationBiomacromoleculeCategory/#linkml-source","text":"name: InformationBiomacromoleculeCategory from_schema: https://w3id.org/gocam rank: 1000 permissible_values: GeneOrReferenceProtein: text: GeneOrReferenceProtein meaning: biolink.GeneOrGeneProduct ProteinIsoform: text: ProteinIsoform MacromolecularComplex: text: MacromolecularComplex Unknown: text: Unknown","title":"LinkML Source"},{"location":"InformationBiomacromoleculeTermObject/","text":"Class: InformationBiomacromoleculeTermObject An abstract class for all information biomacromolecule term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:InformationBiomacromoleculeTermObject classDiagram class InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click TermObject href \"../TermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject : id InformationBiomacromoleculeTermObject : label InformationBiomacromoleculeTermObject : obsolete InformationBiomacromoleculeTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject ProteinComplexTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used Activity enabled_by range InformationBiomacromoleculeTermObject Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:InformationBiomacromoleculeTermObject native gocam:InformationBiomacromoleculeTermObject LinkML Source Direct name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true Induced name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: InformationBiomacromoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: InformationBiomacromoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: InformationBiomacromoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: InformationBiomacromoleculeTermObject domain_of: - Object range: boolean","title":"Class: InformationBiomacromoleculeTermObject"},{"location":"InformationBiomacromoleculeTermObject/#class-informationbiomacromoleculetermobject","text":"An abstract class for all information biomacromolecule term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:InformationBiomacromoleculeTermObject classDiagram class InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click TermObject href \"../TermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject : id InformationBiomacromoleculeTermObject : label InformationBiomacromoleculeTermObject : obsolete InformationBiomacromoleculeTermObject : type","title":"Class: InformationBiomacromoleculeTermObject"},{"location":"InformationBiomacromoleculeTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject ProteinComplexTermObject","title":"Inheritance"},{"location":"InformationBiomacromoleculeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"InformationBiomacromoleculeTermObject/#usages","text":"used by used in type used Activity enabled_by range InformationBiomacromoleculeTermObject","title":"Usages"},{"location":"InformationBiomacromoleculeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"InformationBiomacromoleculeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"InformationBiomacromoleculeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:InformationBiomacromoleculeTermObject native gocam:InformationBiomacromoleculeTermObject","title":"Mappings"},{"location":"InformationBiomacromoleculeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"InformationBiomacromoleculeTermObject/#direct","text":"name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true","title":"Direct"},{"location":"InformationBiomacromoleculeTermObject/#induced","text":"name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: InformationBiomacromoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: InformationBiomacromoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: InformationBiomacromoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: InformationBiomacromoleculeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Model/","text":"Class: Model A model of a biological program consisting of a set of causally connected activities URI: gocam:Model classDiagram class Model click Model href \"../Model\" Model : activities Model --> \"*\" Activity : activities click Activity href \"../Activity\" Model : comments Model : id Model : objects Model --> \"*\" Object : objects click Object href \"../Object\" Model : provenances Model --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Model : status Model --> \"0..1\" ModelStateEnum : status click ModelStateEnum href \"../ModelStateEnum\" Model : taxon Model --> \"0..1\" TaxonTermObject : taxon click TaxonTermObject href \"../TaxonTermObject\" Model : title Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie The identifier of the model direct title 0..1 String The human-readable descriptive title of the model direct taxon 0..1 TaxonTermObject The primary taxon that the model is about direct status 0..1 ModelStateEnum The status of the model direct comments * String Comments about the model direct activities * Activity All of the activities that are part of the model direct objects * Object All of the objects that are part of the model direct provenances * ProvenanceInfo Model-level provenance information direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Model native gocam:Model LinkML Source Direct name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title domain_of: - Model taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true domain_of: - Model activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Activity inlined: true inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Object inlined: true inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true alias: id owner: Model domain_of: - Model - Activity - Object range: uriorcurie title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title alias: title owner: Model domain_of: - Model range: string taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 alias: taxon owner: Model domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status alias: status owner: Model domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true alias: comments owner: Model domain_of: - Model range: string activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - Model range: Activity inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: objects owner: Model domain_of: - Model range: Object inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: provenances owner: Model domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined_as_list: true","title":"Class: Model"},{"location":"Model/#class-model","text":"A model of a biological program consisting of a set of causally connected activities URI: gocam:Model classDiagram class Model click Model href \"../Model\" Model : activities Model --> \"*\" Activity : activities click Activity href \"../Activity\" Model : comments Model : id Model : objects Model --> \"*\" Object : objects click Object href \"../Object\" Model : provenances Model --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Model : status Model --> \"0..1\" ModelStateEnum : status click ModelStateEnum href \"../ModelStateEnum\" Model : taxon Model --> \"0..1\" TaxonTermObject : taxon click TaxonTermObject href \"../TaxonTermObject\" Model : title","title":"Class: Model"},{"location":"Model/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie The identifier of the model direct title 0..1 String The human-readable descriptive title of the model direct taxon 0..1 TaxonTermObject The primary taxon that the model is about direct status 0..1 ModelStateEnum The status of the model direct comments * String Comments about the model direct activities * Activity All of the activities that are part of the model direct objects * Object All of the objects that are part of the model direct provenances * ProvenanceInfo Model-level provenance information direct","title":"Slots"},{"location":"Model/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Model/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Model/#mappings","text":"Mapping Type Mapped Value self gocam:Model native gocam:Model","title":"Mappings"},{"location":"Model/#linkml-source","text":"","title":"LinkML Source"},{"location":"Model/#direct","text":"name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title domain_of: - Model taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true domain_of: - Model activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Activity inlined: true inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Object inlined: true inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Model/#induced","text":"name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true alias: id owner: Model domain_of: - Model - Activity - Object range: uriorcurie title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title alias: title owner: Model domain_of: - Model range: string taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 alias: taxon owner: Model domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status alias: status owner: Model domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true alias: comments owner: Model domain_of: - Model range: string activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - Model range: Activity inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: objects owner: Model domain_of: - Model range: Object inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: provenances owner: Model domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined_as_list: true","title":"Induced"},{"location":"ModelStateEnum/","text":"Enum: ModelStateEnum Status of a model URI: ModelStateEnum Permissible Values Value Meaning Description production None development None Slots Name Description status The status of the model Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: ModelStateEnum description: Status of a model from_schema: https://w3id.org/gocam rank: 1000 permissible_values: production: text: production development: text: development","title":"Enum: ModelStateEnum"},{"location":"ModelStateEnum/#enum-modelstateenum","text":"Status of a model URI: ModelStateEnum","title":"Enum: ModelStateEnum"},{"location":"ModelStateEnum/#permissible-values","text":"Value Meaning Description production None development None","title":"Permissible Values"},{"location":"ModelStateEnum/#slots","text":"Name Description status The status of the model","title":"Slots"},{"location":"ModelStateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ModelStateEnum/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ModelStateEnum/#linkml-source","text":"name: ModelStateEnum description: Status of a model from_schema: https://w3id.org/gocam rank: 1000 permissible_values: production: text: production development: text: development","title":"LinkML Source"},{"location":"MolecularFunctionAssociation/","text":"Class: MolecularFunctionAssociation An association between an activity and a molecular function term URI: gocam:MolecularFunctionAssociation classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href \"../TermAssociation\" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MolecularFunctionAssociation : term MolecularFunctionAssociation --> \"0..1\" MolecularFunctionTermObject : term click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" MolecularFunctionAssociation : type Inheritance Association TermAssociation MolecularFunctionAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 MolecularFunctionTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity molecular_function range MolecularFunctionAssociation TODOs account for non-MF activity types in Reactome Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MolecularFunctionAssociation native gocam:MolecularFunctionAssociation LinkML Source Direct name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject Induced name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MolecularFunctionAssociation domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MolecularFunctionAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MolecularFunctionAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MolecularFunctionAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: MolecularFunctionAssociation"},{"location":"MolecularFunctionAssociation/#class-molecularfunctionassociation","text":"An association between an activity and a molecular function term URI: gocam:MolecularFunctionAssociation classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href \"../TermAssociation\" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MolecularFunctionAssociation : term MolecularFunctionAssociation --> \"0..1\" MolecularFunctionTermObject : term click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" MolecularFunctionAssociation : type","title":"Class: MolecularFunctionAssociation"},{"location":"MolecularFunctionAssociation/#inheritance","text":"Association TermAssociation MolecularFunctionAssociation","title":"Inheritance"},{"location":"MolecularFunctionAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 MolecularFunctionTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"MolecularFunctionAssociation/#usages","text":"used by used in type used Activity molecular_function range MolecularFunctionAssociation","title":"Usages"},{"location":"MolecularFunctionAssociation/#todos","text":"account for non-MF activity types in Reactome","title":"TODOs"},{"location":"MolecularFunctionAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MolecularFunctionAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MolecularFunctionAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:MolecularFunctionAssociation native gocam:MolecularFunctionAssociation","title":"Mappings"},{"location":"MolecularFunctionAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"MolecularFunctionAssociation/#direct","text":"name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject","title":"Direct"},{"location":"MolecularFunctionAssociation/#induced","text":"name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MolecularFunctionAssociation domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MolecularFunctionAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MolecularFunctionAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MolecularFunctionAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"MolecularFunctionTermObject/","text":"Class: MolecularFunctionTermObject A term object that represents a molecular function term from GO URI: gocam:MolecularFunctionTermObject classDiagram class MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- MolecularFunctionTermObject click TermObject href \"../TermObject\" MolecularFunctionTermObject : id MolecularFunctionTermObject : label MolecularFunctionTermObject : obsolete MolecularFunctionTermObject : type Inheritance Object TermObject MolecularFunctionTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used MolecularFunctionAssociation term range MolecularFunctionTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MolecularFunctionTermObject native gocam:MolecularFunctionTermObject LinkML Source Direct name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MolecularFunctionTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MolecularFunctionTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MolecularFunctionTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MolecularFunctionTermObject domain_of: - Object range: boolean","title":"Class: MolecularFunctionTermObject"},{"location":"MolecularFunctionTermObject/#class-molecularfunctiontermobject","text":"A term object that represents a molecular function term from GO URI: gocam:MolecularFunctionTermObject classDiagram class MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- MolecularFunctionTermObject click TermObject href \"../TermObject\" MolecularFunctionTermObject : id MolecularFunctionTermObject : label MolecularFunctionTermObject : obsolete MolecularFunctionTermObject : type","title":"Class: MolecularFunctionTermObject"},{"location":"MolecularFunctionTermObject/#inheritance","text":"Object TermObject MolecularFunctionTermObject","title":"Inheritance"},{"location":"MolecularFunctionTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"MolecularFunctionTermObject/#usages","text":"used by used in type used MolecularFunctionAssociation term range MolecularFunctionTermObject","title":"Usages"},{"location":"MolecularFunctionTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MolecularFunctionTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"MolecularFunctionTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MolecularFunctionTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:MolecularFunctionTermObject native gocam:MolecularFunctionTermObject","title":"Mappings"},{"location":"MolecularFunctionTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"MolecularFunctionTermObject/#direct","text":"name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"MolecularFunctionTermObject/#induced","text":"name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MolecularFunctionTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MolecularFunctionTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MolecularFunctionTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MolecularFunctionTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"MoleculeAssociation/","text":"Class: MoleculeAssociation An association between an activity and a molecule term URI: gocam:MoleculeAssociation classDiagram class MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation <|-- MoleculeAssociation click TermAssociation href \"../TermAssociation\" MoleculeAssociation : evidence MoleculeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MoleculeAssociation : provenances MoleculeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MoleculeAssociation : term MoleculeAssociation --> \"0..1\" MoleculeTermObject : term click MoleculeTermObject href \"../MoleculeTermObject\" MoleculeAssociation : type Inheritance Association TermAssociation MoleculeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 MoleculeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity has_direct_input range MoleculeAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MoleculeAssociation native gocam:MoleculeAssociation LinkML Source Direct name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject Induced name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MoleculeAssociation domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MoleculeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MoleculeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MoleculeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: MoleculeAssociation"},{"location":"MoleculeAssociation/#class-moleculeassociation","text":"An association between an activity and a molecule term URI: gocam:MoleculeAssociation classDiagram class MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation <|-- MoleculeAssociation click TermAssociation href \"../TermAssociation\" MoleculeAssociation : evidence MoleculeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MoleculeAssociation : provenances MoleculeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MoleculeAssociation : term MoleculeAssociation --> \"0..1\" MoleculeTermObject : term click MoleculeTermObject href \"../MoleculeTermObject\" MoleculeAssociation : type","title":"Class: MoleculeAssociation"},{"location":"MoleculeAssociation/#inheritance","text":"Association TermAssociation MoleculeAssociation","title":"Inheritance"},{"location":"MoleculeAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 MoleculeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"MoleculeAssociation/#usages","text":"used by used in type used Activity has_direct_input range MoleculeAssociation","title":"Usages"},{"location":"MoleculeAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MoleculeAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MoleculeAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:MoleculeAssociation native gocam:MoleculeAssociation","title":"Mappings"},{"location":"MoleculeAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"MoleculeAssociation/#direct","text":"name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject","title":"Direct"},{"location":"MoleculeAssociation/#induced","text":"name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MoleculeAssociation domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MoleculeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MoleculeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MoleculeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"MoleculeTermObject/","text":"Class: MoleculeTermObject A term object that represents a molecule term from CHEBI or UniProtKB URI: gocam:MoleculeTermObject classDiagram class MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- MoleculeTermObject click TermObject href \"../TermObject\" MoleculeTermObject : id MoleculeTermObject : label MoleculeTermObject : obsolete MoleculeTermObject : type Inheritance Object TermObject MoleculeTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used MoleculeAssociation term range MoleculeTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: CHEBI UniProtKB Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MoleculeTermObject native gocam:MoleculeTermObject LinkML Source Direct name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject Induced name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MoleculeTermObject domain_of: - Object range: boolean","title":"Class: MoleculeTermObject"},{"location":"MoleculeTermObject/#class-moleculetermobject","text":"A term object that represents a molecule term from CHEBI or UniProtKB URI: gocam:MoleculeTermObject classDiagram class MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- MoleculeTermObject click TermObject href \"../TermObject\" MoleculeTermObject : id MoleculeTermObject : label MoleculeTermObject : obsolete MoleculeTermObject : type","title":"Class: MoleculeTermObject"},{"location":"MoleculeTermObject/#inheritance","text":"Object TermObject MoleculeTermObject","title":"Inheritance"},{"location":"MoleculeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"MoleculeTermObject/#usages","text":"used by used in type used MoleculeAssociation term range MoleculeTermObject","title":"Usages"},{"location":"MoleculeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MoleculeTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: CHEBI UniProtKB","title":"Valid ID Prefixes"},{"location":"MoleculeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MoleculeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:MoleculeTermObject native gocam:MoleculeTermObject","title":"Mappings"},{"location":"MoleculeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"MoleculeTermObject/#direct","text":"name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"MoleculeTermObject/#induced","text":"name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MoleculeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Object/","text":"Class: Object An abstract class for all identified objects in a model URI: gocam:Object classDiagram class Object click Object href \"../Object\" Object <|-- TermObject click TermObject href \"../TermObject\" Object <|-- PublicationObject click PublicationObject href \"../PublicationObject\" Object : id Object : label Object : obsolete Object : type Inheritance Object TermObject PublicationObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie direct label 0..1 String direct type 0..1 Uriorcurie direct obsolete 0..1 Boolean direct Usages used by used in type used Model objects range Object EvidenceItem with_objects range Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Object native gocam:Object LinkML Source Direct name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label domain_of: - Object type: name: type from_schema: https://w3id.org/gocam designates_type: true domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Object range: boolean Induced name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: Object domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: Object domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: Object domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: Object domain_of: - Object range: boolean","title":"Class: Object"},{"location":"Object/#class-object","text":"An abstract class for all identified objects in a model URI: gocam:Object classDiagram class Object click Object href \"../Object\" Object <|-- TermObject click TermObject href \"../TermObject\" Object <|-- PublicationObject click PublicationObject href \"../PublicationObject\" Object : id Object : label Object : obsolete Object : type","title":"Class: Object"},{"location":"Object/#inheritance","text":"Object TermObject PublicationObject","title":"Inheritance"},{"location":"Object/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie direct label 0..1 String direct type 0..1 Uriorcurie direct obsolete 0..1 Boolean direct","title":"Slots"},{"location":"Object/#usages","text":"used by used in type used Model objects range Object EvidenceItem with_objects range Object","title":"Usages"},{"location":"Object/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Object/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Object/#mappings","text":"Mapping Type Mapped Value self gocam:Object native gocam:Object","title":"Mappings"},{"location":"Object/#linkml-source","text":"","title":"LinkML Source"},{"location":"Object/#direct","text":"name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label domain_of: - Object type: name: type from_schema: https://w3id.org/gocam designates_type: true domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Object range: boolean","title":"Direct"},{"location":"Object/#induced","text":"name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: Object domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: Object domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: Object domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: Object domain_of: - Object range: boolean","title":"Induced"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PhaseTermObject/","text":"Class: PhaseTermObject A term object that represents a phase term from GO or UBERON URI: gocam:PhaseTermObject classDiagram class PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- PhaseTermObject click TermObject href \"../TermObject\" PhaseTermObject : id PhaseTermObject : label PhaseTermObject : obsolete PhaseTermObject : type Inheritance Object TermObject PhaseTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO UBERON PO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PhaseTermObject native gocam:PhaseTermObject LinkML Source Direct name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject Induced name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PhaseTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PhaseTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PhaseTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PhaseTermObject domain_of: - Object range: boolean","title":"Class: PhaseTermObject"},{"location":"PhaseTermObject/#class-phasetermobject","text":"A term object that represents a phase term from GO or UBERON URI: gocam:PhaseTermObject classDiagram class PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- PhaseTermObject click TermObject href \"../TermObject\" PhaseTermObject : id PhaseTermObject : label PhaseTermObject : obsolete PhaseTermObject : type","title":"Class: PhaseTermObject"},{"location":"PhaseTermObject/#inheritance","text":"Object TermObject PhaseTermObject","title":"Inheritance"},{"location":"PhaseTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PhaseTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PhaseTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO UBERON PO","title":"Valid ID Prefixes"},{"location":"PhaseTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PhaseTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:PhaseTermObject native gocam:PhaseTermObject","title":"Mappings"},{"location":"PhaseTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PhaseTermObject/#direct","text":"name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"PhaseTermObject/#induced","text":"name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PhaseTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PhaseTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PhaseTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PhaseTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"PredicateTermObject/","text":"Class: PredicateTermObject A term object that represents a taxon term from NCBITaxon URI: gocam:PredicateTermObject classDiagram class PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject <|-- PredicateTermObject click TermObject href \"../TermObject\" PredicateTermObject : id PredicateTermObject : label PredicateTermObject : obsolete PredicateTermObject : type Inheritance Object TermObject PredicateTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CausalAssociation predicate range PredicateTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: RO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PredicateTermObject native gocam:PredicateTermObject LinkML Source Direct name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject Induced name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PredicateTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PredicateTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PredicateTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PredicateTermObject domain_of: - Object range: boolean","title":"Class: PredicateTermObject"},{"location":"PredicateTermObject/#class-predicatetermobject","text":"A term object that represents a taxon term from NCBITaxon URI: gocam:PredicateTermObject classDiagram class PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject <|-- PredicateTermObject click TermObject href \"../TermObject\" PredicateTermObject : id PredicateTermObject : label PredicateTermObject : obsolete PredicateTermObject : type","title":"Class: PredicateTermObject"},{"location":"PredicateTermObject/#inheritance","text":"Object TermObject PredicateTermObject","title":"Inheritance"},{"location":"PredicateTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PredicateTermObject/#usages","text":"used by used in type used CausalAssociation predicate range PredicateTermObject","title":"Usages"},{"location":"PredicateTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PredicateTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: RO","title":"Valid ID Prefixes"},{"location":"PredicateTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PredicateTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:PredicateTermObject native gocam:PredicateTermObject","title":"Mappings"},{"location":"PredicateTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PredicateTermObject/#direct","text":"name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"PredicateTermObject/#induced","text":"name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PredicateTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PredicateTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PredicateTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PredicateTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"ProteinComplexTermObject/","text":"Class: ProteinComplexTermObject A term object that represents a protein complex term from GO URI: gocam:ProteinComplexTermObject classDiagram class ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" ProteinComplexTermObject : id ProteinComplexTermObject : label ProteinComplexTermObject : obsolete ProteinComplexTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject ProteinComplexTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:ProteinComplexTermObject native gocam:ProteinComplexTermObject LinkML Source Direct name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject Induced name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: ProteinComplexTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: ProteinComplexTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: ProteinComplexTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: ProteinComplexTermObject domain_of: - Object range: boolean","title":"Class: ProteinComplexTermObject"},{"location":"ProteinComplexTermObject/#class-proteincomplextermobject","text":"A term object that represents a protein complex term from GO URI: gocam:ProteinComplexTermObject classDiagram class ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" ProteinComplexTermObject : id ProteinComplexTermObject : label ProteinComplexTermObject : obsolete ProteinComplexTermObject : type","title":"Class: ProteinComplexTermObject"},{"location":"ProteinComplexTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject ProteinComplexTermObject","title":"Inheritance"},{"location":"ProteinComplexTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"ProteinComplexTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ProteinComplexTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ProteinComplexTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:ProteinComplexTermObject native gocam:ProteinComplexTermObject","title":"Mappings"},{"location":"ProteinComplexTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"ProteinComplexTermObject/#direct","text":"name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject","title":"Direct"},{"location":"ProteinComplexTermObject/#induced","text":"name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: ProteinComplexTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: ProteinComplexTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: ProteinComplexTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: ProteinComplexTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"ProvenanceInfo/","text":"Class: ProvenanceInfo Provenance information for an object URI: gocam:ProvenanceInfo classDiagram class ProvenanceInfo click ProvenanceInfo href \"../ProvenanceInfo\" ProvenanceInfo : contributor ProvenanceInfo : created ProvenanceInfo : date ProvenanceInfo : provided_by Slots Name Cardinality and Range Description Inheritance contributor 0..1 String direct created 0..1 String direct date 0..1 String direct provided_by 0..1 String direct Usages used by used in type used Model provenances range ProvenanceInfo Activity provenances range ProvenanceInfo EvidenceItem provenances range ProvenanceInfo Association provenances range ProvenanceInfo CausalAssociation provenances range ProvenanceInfo TermAssociation provenances range ProvenanceInfo MolecularFunctionAssociation provenances range ProvenanceInfo BiologicalProcessAssociation provenances range ProvenanceInfo CellularAnatomicalEntityAssociation provenances range ProvenanceInfo CellTypeAssociation provenances range ProvenanceInfo GrossAnatomyAssociation provenances range ProvenanceInfo MoleculeAssociation provenances range ProvenanceInfo Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:ProvenanceInfo native gocam:ProvenanceInfo LinkML Source Direct name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor domain_of: - ProvenanceInfo created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created domain_of: - ProvenanceInfo date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date domain_of: - ProvenanceInfo provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy domain_of: - ProvenanceInfo Induced name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor alias: contributor owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created alias: created owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date alias: date owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy alias: provided_by owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string","title":"Class: ProvenanceInfo"},{"location":"ProvenanceInfo/#class-provenanceinfo","text":"Provenance information for an object URI: gocam:ProvenanceInfo classDiagram class ProvenanceInfo click ProvenanceInfo href \"../ProvenanceInfo\" ProvenanceInfo : contributor ProvenanceInfo : created ProvenanceInfo : date ProvenanceInfo : provided_by","title":"Class: ProvenanceInfo"},{"location":"ProvenanceInfo/#slots","text":"Name Cardinality and Range Description Inheritance contributor 0..1 String direct created 0..1 String direct date 0..1 String direct provided_by 0..1 String direct","title":"Slots"},{"location":"ProvenanceInfo/#usages","text":"used by used in type used Model provenances range ProvenanceInfo Activity provenances range ProvenanceInfo EvidenceItem provenances range ProvenanceInfo Association provenances range ProvenanceInfo CausalAssociation provenances range ProvenanceInfo TermAssociation provenances range ProvenanceInfo MolecularFunctionAssociation provenances range ProvenanceInfo BiologicalProcessAssociation provenances range ProvenanceInfo CellularAnatomicalEntityAssociation provenances range ProvenanceInfo CellTypeAssociation provenances range ProvenanceInfo GrossAnatomyAssociation provenances range ProvenanceInfo MoleculeAssociation provenances range ProvenanceInfo","title":"Usages"},{"location":"ProvenanceInfo/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ProvenanceInfo/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ProvenanceInfo/#mappings","text":"Mapping Type Mapped Value self gocam:ProvenanceInfo native gocam:ProvenanceInfo","title":"Mappings"},{"location":"ProvenanceInfo/#linkml-source","text":"","title":"LinkML Source"},{"location":"ProvenanceInfo/#direct","text":"name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor domain_of: - ProvenanceInfo created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created domain_of: - ProvenanceInfo date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date domain_of: - ProvenanceInfo provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy domain_of: - ProvenanceInfo","title":"Direct"},{"location":"ProvenanceInfo/#induced","text":"name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor alias: contributor owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created alias: created owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date alias: date owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy alias: provided_by owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string","title":"Induced"},{"location":"PublicationObject/","text":"Class: PublicationObject An object that represents a publication or other kind of reference URI: gocam:PublicationObject classDiagram class PublicationObject click PublicationObject href \"../PublicationObject\" Object <|-- PublicationObject click Object href \"../Object\" PublicationObject : abstract_text PublicationObject : full_text PublicationObject : id PublicationObject : label PublicationObject : obsolete PublicationObject : type Inheritance Object PublicationObject Slots Name Cardinality and Range Description Inheritance abstract_text 0..1 String direct full_text 0..1 String direct id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used EvidenceItem reference range PublicationObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: PMID GOREF DOI Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PublicationObject native gocam:PublicationObject LinkML Source Direct name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject Induced name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 alias: full_text owner: PublicationObject domain_of: - PublicationObject range: string id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PublicationObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PublicationObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PublicationObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PublicationObject domain_of: - Object range: boolean","title":"Class: PublicationObject"},{"location":"PublicationObject/#class-publicationobject","text":"An object that represents a publication or other kind of reference URI: gocam:PublicationObject classDiagram class PublicationObject click PublicationObject href \"../PublicationObject\" Object <|-- PublicationObject click Object href \"../Object\" PublicationObject : abstract_text PublicationObject : full_text PublicationObject : id PublicationObject : label PublicationObject : obsolete PublicationObject : type","title":"Class: PublicationObject"},{"location":"PublicationObject/#inheritance","text":"Object PublicationObject","title":"Inheritance"},{"location":"PublicationObject/#slots","text":"Name Cardinality and Range Description Inheritance abstract_text 0..1 String direct full_text 0..1 String direct id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PublicationObject/#usages","text":"used by used in type used EvidenceItem reference range PublicationObject","title":"Usages"},{"location":"PublicationObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PublicationObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: PMID GOREF DOI","title":"Valid ID Prefixes"},{"location":"PublicationObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PublicationObject/#mappings","text":"Mapping Type Mapped Value self gocam:PublicationObject native gocam:PublicationObject","title":"Mappings"},{"location":"PublicationObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PublicationObject/#direct","text":"name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject","title":"Direct"},{"location":"PublicationObject/#induced","text":"name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 alias: full_text owner: PublicationObject domain_of: - PublicationObject range: string id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PublicationObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PublicationObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PublicationObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PublicationObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TaxonTermObject/","text":"Class: TaxonTermObject A term object that represents a taxon term from NCBITaxon URI: gocam:TaxonTermObject classDiagram class TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- TaxonTermObject click TermObject href \"../TermObject\" TaxonTermObject : id TaxonTermObject : label TaxonTermObject : obsolete TaxonTermObject : type Inheritance Object TermObject TaxonTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used Model taxon range TaxonTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: NCBITaxon Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TaxonTermObject native gocam:TaxonTermObject LinkML Source Direct name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject Induced name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TaxonTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TaxonTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TaxonTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TaxonTermObject domain_of: - Object range: boolean","title":"Class: TaxonTermObject"},{"location":"TaxonTermObject/#class-taxontermobject","text":"A term object that represents a taxon term from NCBITaxon URI: gocam:TaxonTermObject classDiagram class TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- TaxonTermObject click TermObject href \"../TermObject\" TaxonTermObject : id TaxonTermObject : label TaxonTermObject : obsolete TaxonTermObject : type","title":"Class: TaxonTermObject"},{"location":"TaxonTermObject/#inheritance","text":"Object TermObject TaxonTermObject","title":"Inheritance"},{"location":"TaxonTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"TaxonTermObject/#usages","text":"used by used in type used Model taxon range TaxonTermObject","title":"Usages"},{"location":"TaxonTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TaxonTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: NCBITaxon","title":"Valid ID Prefixes"},{"location":"TaxonTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TaxonTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:TaxonTermObject native gocam:TaxonTermObject","title":"Mappings"},{"location":"TaxonTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"TaxonTermObject/#direct","text":"name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"TaxonTermObject/#induced","text":"name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TaxonTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TaxonTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TaxonTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TaxonTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"TermAssociation/","text":"Class: TermAssociation An association between an activity and a term, potentially with extensions NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermAssociation classDiagram class TermAssociation click TermAssociation href \"../TermAssociation\" Association <|-- TermAssociation click Association href \"../Association\" TermAssociation <|-- MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation : evidence TermAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" TermAssociation : provenances TermAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" TermAssociation : term TermAssociation --> \"0..1\" TermObject : term click TermObject href \"../TermObject\" TermAssociation : type Inheritance Association TermAssociation MolecularFunctionAssociation BiologicalProcessAssociation CellularAnatomicalEntityAssociation CellTypeAssociation GrossAnatomyAssociation MoleculeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 TermObject The ontology term that describes the nature of the association direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TermAssociation native gocam:TermAssociation LinkML Source Direct name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam domain_of: - 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Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: TermAssociation"},{"location":"TermAssociation/#class-termassociation","text":"An association between an activity and a term, potentially with extensions NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermAssociation classDiagram class TermAssociation click TermAssociation href \"../TermAssociation\" Association <|-- TermAssociation click Association href \"../Association\" TermAssociation <|-- MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation : evidence TermAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" TermAssociation : provenances TermAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" TermAssociation : term TermAssociation --> \"0..1\" TermObject : term click TermObject href \"../TermObject\" TermAssociation : type","title":"Class: TermAssociation"},{"location":"TermAssociation/#inheritance","text":"Association TermAssociation MolecularFunctionAssociation BiologicalProcessAssociation CellularAnatomicalEntityAssociation CellTypeAssociation GrossAnatomyAssociation MoleculeAssociation","title":"Inheritance"},{"location":"TermAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 TermObject The ontology term that describes the nature of the association direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"TermAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TermAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TermAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:TermAssociation native gocam:TermAssociation","title":"Mappings"},{"location":"TermAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"TermAssociation/#direct","text":"name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam domain_of: - EvidenceItem - TermAssociation range: TermObject","title":"Direct"},{"location":"TermAssociation/#induced","text":"name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: TermAssociation domain_of: - EvidenceItem - TermAssociation range: TermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: TermAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: TermAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: TermAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"TermObject/","text":"Class: TermObject An abstract class for all ontology term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermObject classDiagram class TermObject click TermObject href \"../TermObject\" Object <|-- TermObject click Object href \"../Object\" TermObject <|-- EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject : id TermObject : label TermObject : obsolete TermObject : type Inheritance Object TermObject EvidenceTermObject MolecularFunctionTermObject BiologicalProcessTermObject CellularAnatomicalEntityTermObject MoleculeTermObject CellTypeTermObject GrossAnatomicalStructureTermObject PhaseTermObject InformationBiomacromoleculeTermObject TaxonTermObject PredicateTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used TermAssociation term range TermObject Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TermObject native gocam:TermObject LinkML Source Direct name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true Induced name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TermObject domain_of: - Object range: boolean","title":"Class: TermObject"},{"location":"TermObject/#class-termobject","text":"An abstract class for all ontology term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermObject classDiagram class TermObject click TermObject href \"../TermObject\" Object <|-- TermObject click Object href \"../Object\" TermObject <|-- EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject : id TermObject : label TermObject : obsolete TermObject : type","title":"Class: TermObject"},{"location":"TermObject/#inheritance","text":"Object TermObject EvidenceTermObject MolecularFunctionTermObject BiologicalProcessTermObject CellularAnatomicalEntityTermObject MoleculeTermObject CellTypeTermObject GrossAnatomicalStructureTermObject PhaseTermObject InformationBiomacromoleculeTermObject TaxonTermObject PredicateTermObject","title":"Inheritance"},{"location":"TermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"TermObject/#usages","text":"used by used in type used TermAssociation term range TermObject","title":"Usages"},{"location":"TermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TermObject/#mappings","text":"Mapping Type Mapped Value self gocam:TermObject native gocam:TermObject","title":"Mappings"},{"location":"TermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"TermObject/#direct","text":"name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true","title":"Direct"},{"location":"TermObject/#induced","text":"name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Uri/","text":"Type: Uri a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str Comments in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str","title":"Type: Uri"},{"location":"Uri/#comments","text":"in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node","title":"Comments"},{"location":"Uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uri/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Uriorcurie/","text":"Type: Uriorcurie a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uriorcurie/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"about/","text":"gocam GO CAM Data Model (Python)","title":"About"},{"location":"about/#gocam","text":"GO CAM Data Model (Python)","title":"gocam"},{"location":"abstract_text/","text":"Slot: abstract_text URI: gocam:abstract_text Applicable Classes Name Description Modifies Slot PublicationObject An object that represents a publication or other kind of reference no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string","title":"Slot: abstract_text"},{"location":"abstract_text/#slot-abstract_text","text":"URI: gocam:abstract_text","title":"Slot: abstract_text"},{"location":"abstract_text/#applicable-classes","text":"Name Description Modifies Slot PublicationObject An object that represents a publication or other kind of reference no","title":"Applicable Classes"},{"location":"abstract_text/#properties","text":"Range: String","title":"Properties"},{"location":"abstract_text/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"abstract_text/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"abstract_text/#linkml-source","text":"name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string","title":"LinkML Source"},{"location":"activities/","text":"Slot: activities All of the activities that are part of the model URI: gocam:activities Applicable Classes Name Description Modifies Slot Model A model of a biological program consisting of a set of causally connected act... no Properties Range: Activity Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - 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This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. URI: gocam:objects Applicable Classes Name Description Modifies Slot Model A model of a biological program consisting of a set of causally connected act... no Properties Range: Object Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. 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Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE","title":"Types"},{"location":"#subsets","text":"Subset Description","title":"Subsets"},{"location":"Activity/","text":"Class: Activity An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model URI: gocam:Activity classDiagram class Activity click Activity href \"../Activity\" Activity : causal_associations Activity --> \"*\" CausalAssociation : causal_associations click CausalAssociation href \"../CausalAssociation\" Activity : enabled_by Activity --> \"0..1\" InformationBiomacromoleculeTermObject : enabled_by click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" Activity : has_direct_input Activity --> \"0..1\" MoleculeAssociation : has_direct_input click MoleculeAssociation href \"../MoleculeAssociation\" Activity : id Activity : molecular_function Activity --> \"0..1\" MolecularFunctionAssociation : molecular_function click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" Activity : occurs_in Activity --> \"0..1\" CellularAnatomicalEntityAssociation : occurs_in click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" Activity : part_of Activity --> \"0..1\" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" Activity : provenances Activity --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Identifier of the activity unit direct enabled_by 0..1 InformationBiomacromoleculeTermObject The gene product or complex that carries out the activity direct molecular_function 0..1 MolecularFunctionAssociation The molecular function that is carried out by the gene product or complex direct occurs_in 0..1 CellularAnatomicalEntityAssociation The cellular location in which the activity occurs direct part_of 0..1 BiologicalProcessAssociation The larger biological process in which the activity is a part direct has_direct_input 0..1 MoleculeAssociation The input molecules that are directly consumed by the activity direct causal_associations * CausalAssociation The causal associations that connect this activity to other activities direct provenances * ProvenanceInfo Provenance information for the activity direct Usages used by used in type used Model activities range Activity CausalAssociation downstream_activity range Activity Aliases annoton Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Activity native gocam:Activity LinkML Source Direct name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true alias: id owner: Activity domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 alias: enabled_by owner: Activity domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 alias: molecular_function owner: Activity domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 alias: occurs_in owner: Activity domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 alias: part_of owner: Activity domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 alias: has_direct_input owner: Activity domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: causal_associations owner: Activity domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Activity domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: Activity"},{"location":"Activity/#class-activity","text":"An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model URI: gocam:Activity classDiagram class Activity click Activity href \"../Activity\" Activity : causal_associations Activity --> \"*\" CausalAssociation : causal_associations click CausalAssociation href \"../CausalAssociation\" Activity : enabled_by Activity --> \"0..1\" InformationBiomacromoleculeTermObject : enabled_by click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" Activity : has_direct_input Activity --> \"0..1\" MoleculeAssociation : has_direct_input click MoleculeAssociation href \"../MoleculeAssociation\" Activity : id Activity : molecular_function Activity --> \"0..1\" MolecularFunctionAssociation : molecular_function click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" Activity : occurs_in Activity --> \"0..1\" CellularAnatomicalEntityAssociation : occurs_in click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" Activity : part_of Activity --> \"0..1\" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" Activity : provenances Activity --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\"","title":"Class: Activity"},{"location":"Activity/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Identifier of the activity unit direct enabled_by 0..1 InformationBiomacromoleculeTermObject The gene product or complex that carries out the activity direct molecular_function 0..1 MolecularFunctionAssociation The molecular function that is carried out by the gene product or complex direct occurs_in 0..1 CellularAnatomicalEntityAssociation The cellular location in which the activity occurs direct part_of 0..1 BiologicalProcessAssociation The larger biological process in which the activity is a part direct has_direct_input 0..1 MoleculeAssociation The input molecules that are directly consumed by the activity direct causal_associations * CausalAssociation The causal associations that connect this activity to other activities direct provenances * ProvenanceInfo Provenance information for the activity direct","title":"Slots"},{"location":"Activity/#usages","text":"used by used in type used Model activities range Activity CausalAssociation downstream_activity range Activity","title":"Usages"},{"location":"Activity/#aliases","text":"annoton","title":"Aliases"},{"location":"Activity/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Activity/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Activity/#mappings","text":"Mapping Type Mapped Value self gocam:Activity native gocam:Activity","title":"Mappings"},{"location":"Activity/#linkml-source","text":"","title":"LinkML Source"},{"location":"Activity/#direct","text":"name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Activity/#induced","text":"name: Activity description: An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model from_schema: https://w3id.org/gocam aliases: - annoton attributes: id: name: id description: Identifier of the activity unit. Should be in gocam namespace. comments: - Typically does not need to be exposed to end-user, this exists to allow activity flows from_schema: https://w3id.org/gocam identifier: true alias: id owner: Activity domain_of: - Model - Activity - Object range: uriorcurie required: true enabled_by: name: enabled_by description: The gene product or complex that carries out the activity from_schema: https://w3id.org/gocam rank: 1000 alias: enabled_by owner: Activity domain_of: - Activity range: InformationBiomacromoleculeTermObject inlined: false molecular_function: name: molecular_function description: The molecular function that is carried out by the gene product or complex todos: - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation from_schema: https://w3id.org/gocam rank: 1000 alias: molecular_function owner: Activity domain_of: - Activity range: MolecularFunctionAssociation inlined: true occurs_in: name: occurs_in description: The cellular location in which the activity occurs from_schema: https://w3id.org/gocam rank: 1000 alias: occurs_in owner: Activity domain_of: - Activity range: CellularAnatomicalEntityAssociation inlined: true part_of: name: part_of description: The larger biological process in which the activity is a part from_schema: https://w3id.org/gocam rank: 1000 alias: part_of owner: Activity domain_of: - Activity range: BiologicalProcessAssociation inlined: true has_direct_input: name: has_direct_input description: The input molecules that are directly consumed by the activity from_schema: https://w3id.org/gocam rank: 1000 alias: has_direct_input owner: Activity domain_of: - Activity range: MoleculeAssociation inlined: true causal_associations: name: causal_associations description: The causal associations that connect this activity to other activities from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: causal_associations owner: Activity domain_of: - Activity range: CausalAssociation inlined: true inlined_as_list: true provenances: name: provenances description: Provenance information for the activity from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Activity domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"Association/","text":"Class: Association An abstract grouping for different kinds of evidence-associated provenance NOTE : this is an abstract class and should not be instantiated directly URI: gocam:Association classDiagram class Association click Association href \"../Association\" Association <|-- CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- TermAssociation click TermAssociation href \"../TermAssociation\" Association : evidence Association --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" Association : provenances Association --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Association : type Inheritance Association CausalAssociation TermAssociation Slots Name Cardinality and Range Description Inheritance type 0..1 String direct evidence * EvidenceItem direct provenances * ProvenanceInfo direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Association native gocam:Association LinkML Source Direct name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true domain_of: - Association - Object evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: Association domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: Association domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Association domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: Association"},{"location":"Association/#class-association","text":"An abstract grouping for different kinds of evidence-associated provenance NOTE : this is an abstract class and should not be instantiated directly URI: gocam:Association classDiagram class Association click Association href \"../Association\" Association <|-- CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- TermAssociation click TermAssociation href \"../TermAssociation\" Association : evidence Association --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" Association : provenances Association --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Association : type","title":"Class: Association"},{"location":"Association/#inheritance","text":"Association CausalAssociation TermAssociation","title":"Inheritance"},{"location":"Association/#slots","text":"Name Cardinality and Range Description Inheritance type 0..1 String direct evidence * EvidenceItem direct provenances * ProvenanceInfo direct","title":"Slots"},{"location":"Association/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Association/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Association/#mappings","text":"Mapping Type Mapped Value self gocam:Association native gocam:Association","title":"Mappings"},{"location":"Association/#linkml-source","text":"","title":"LinkML Source"},{"location":"Association/#direct","text":"name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true domain_of: - Association - Object evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Association/#induced","text":"name: Association description: An abstract grouping for different kinds of evidence-associated provenance from_schema: https://w3id.org/gocam abstract: true attributes: type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: Association domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: Association domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: Association domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"BiologicalProcessAssociation/","text":"Class: BiologicalProcessAssociation An association between an activity and a biological process term URI: gocam:BiologicalProcessAssociation classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href \"../TermAssociation\" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" BiologicalProcessAssociation : term BiologicalProcessAssociation --> \"0..1\" BiologicalProcessTermObject : term click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" BiologicalProcessAssociation : type Inheritance Association TermAssociation BiologicalProcessAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 BiologicalProcessTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity part_of range BiologicalProcessAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:BiologicalProcessAssociation native gocam:BiologicalProcessAssociation LinkML Source Direct name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject Induced name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: BiologicalProcessAssociation domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: BiologicalProcessAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: BiologicalProcessAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: BiologicalProcessAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: BiologicalProcessAssociation"},{"location":"BiologicalProcessAssociation/#class-biologicalprocessassociation","text":"An association between an activity and a biological process term URI: gocam:BiologicalProcessAssociation classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href \"../TermAssociation\" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" BiologicalProcessAssociation : term BiologicalProcessAssociation --> \"0..1\" BiologicalProcessTermObject : term click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" BiologicalProcessAssociation : type","title":"Class: BiologicalProcessAssociation"},{"location":"BiologicalProcessAssociation/#inheritance","text":"Association TermAssociation BiologicalProcessAssociation","title":"Inheritance"},{"location":"BiologicalProcessAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 BiologicalProcessTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"BiologicalProcessAssociation/#usages","text":"used by used in type used Activity part_of range BiologicalProcessAssociation","title":"Usages"},{"location":"BiologicalProcessAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BiologicalProcessAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"BiologicalProcessAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:BiologicalProcessAssociation native gocam:BiologicalProcessAssociation","title":"Mappings"},{"location":"BiologicalProcessAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"BiologicalProcessAssociation/#direct","text":"name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject","title":"Direct"},{"location":"BiologicalProcessAssociation/#induced","text":"name: BiologicalProcessAssociation description: An association between an activity and a biological process term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject happens_during: name: happens_during description: Optional extension describing where the BP takes place range: PhaseTermObject part_of: name: part_of description: Optional extension allowing hierarchical nesting of BPs range: BiologicalProcessTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: BiologicalProcessAssociation domain_of: - EvidenceItem - TermAssociation range: BiologicalProcessTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: BiologicalProcessAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: BiologicalProcessAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: BiologicalProcessAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"BiologicalProcessTermObject/","text":"Class: BiologicalProcessTermObject A term object that represents a biological process term from GO URI: gocam:BiologicalProcessTermObject classDiagram class BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- BiologicalProcessTermObject click TermObject href \"../TermObject\" BiologicalProcessTermObject : id BiologicalProcessTermObject : label BiologicalProcessTermObject : obsolete BiologicalProcessTermObject : type Inheritance Object TermObject BiologicalProcessTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used BiologicalProcessAssociation term range BiologicalProcessTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:BiologicalProcessTermObject native gocam:BiologicalProcessTermObject LinkML Source Direct name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: BiologicalProcessTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: BiologicalProcessTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: BiologicalProcessTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: BiologicalProcessTermObject domain_of: - Object range: boolean","title":"Class: BiologicalProcessTermObject"},{"location":"BiologicalProcessTermObject/#class-biologicalprocesstermobject","text":"A term object that represents a biological process term from GO URI: gocam:BiologicalProcessTermObject classDiagram class BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- BiologicalProcessTermObject click TermObject href \"../TermObject\" BiologicalProcessTermObject : id BiologicalProcessTermObject : label BiologicalProcessTermObject : obsolete BiologicalProcessTermObject : type","title":"Class: BiologicalProcessTermObject"},{"location":"BiologicalProcessTermObject/#inheritance","text":"Object TermObject BiologicalProcessTermObject","title":"Inheritance"},{"location":"BiologicalProcessTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"BiologicalProcessTermObject/#usages","text":"used by used in type used BiologicalProcessAssociation term range BiologicalProcessTermObject","title":"Usages"},{"location":"BiologicalProcessTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BiologicalProcessTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"BiologicalProcessTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"BiologicalProcessTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:BiologicalProcessTermObject native gocam:BiologicalProcessTermObject","title":"Mappings"},{"location":"BiologicalProcessTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"BiologicalProcessTermObject/#direct","text":"name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"BiologicalProcessTermObject/#induced","text":"name: BiologicalProcessTermObject id_prefixes: - GO description: A term object that represents a biological process term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: BiologicalProcessTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: BiologicalProcessTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: BiologicalProcessTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: BiologicalProcessTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalAssociation/","text":"Class: CausalAssociation A causal association between two activities URI: gocam:CausalAssociation classDiagram class CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- CausalAssociation click Association href \"../Association\" CausalAssociation : downstream_activity CausalAssociation --> \"0..1\" Activity : downstream_activity click Activity href \"../Activity\" CausalAssociation : evidence CausalAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CausalAssociation : predicate CausalAssociation --> \"0..1\" PredicateTermObject : predicate click PredicateTermObject href \"../PredicateTermObject\" CausalAssociation : provenances CausalAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CausalAssociation : type Inheritance Association CausalAssociation Slots Name Cardinality and Range Description Inheritance predicate 0..1 PredicateTermObject The RO relation that represents the type of relationship direct downstream_activity 0..1 Activity The activity unit that is downstream of this one direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity causal_associations range CausalAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CausalAssociation native gocam:CausalAssociation LinkML Source Direct name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 domain_of: - CausalAssociation range: Activity Induced name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 alias: predicate owner: CausalAssociation domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 alias: downstream_activity owner: CausalAssociation domain_of: - CausalAssociation range: Activity type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CausalAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CausalAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CausalAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CausalAssociation"},{"location":"CausalAssociation/#class-causalassociation","text":"A causal association between two activities URI: gocam:CausalAssociation classDiagram class CausalAssociation click CausalAssociation href \"../CausalAssociation\" Association <|-- CausalAssociation click Association href \"../Association\" CausalAssociation : downstream_activity CausalAssociation --> \"0..1\" Activity : downstream_activity click Activity href \"../Activity\" CausalAssociation : evidence CausalAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CausalAssociation : predicate CausalAssociation --> \"0..1\" PredicateTermObject : predicate click PredicateTermObject href \"../PredicateTermObject\" CausalAssociation : provenances CausalAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CausalAssociation : type","title":"Class: CausalAssociation"},{"location":"CausalAssociation/#inheritance","text":"Association CausalAssociation","title":"Inheritance"},{"location":"CausalAssociation/#slots","text":"Name Cardinality and Range Description Inheritance predicate 0..1 PredicateTermObject The RO relation that represents the type of relationship direct downstream_activity 0..1 Activity The activity unit that is downstream of this one direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CausalAssociation/#usages","text":"used by used in type used Activity causal_associations range CausalAssociation","title":"Usages"},{"location":"CausalAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CausalAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CausalAssociation native gocam:CausalAssociation","title":"Mappings"},{"location":"CausalAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CausalAssociation/#direct","text":"name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 domain_of: - CausalAssociation range: Activity","title":"Direct"},{"location":"CausalAssociation/#induced","text":"name: CausalAssociation description: A causal association between two activities from_schema: https://w3id.org/gocam is_a: Association attributes: predicate: name: predicate description: The RO relation that represents the type of relationship from_schema: https://w3id.org/gocam rank: 1000 alias: predicate owner: CausalAssociation domain_of: - CausalAssociation range: PredicateTermObject downstream_activity: name: downstream_activity description: The activity unit that is downstream of this one from_schema: https://w3id.org/gocam aliases: - object rank: 1000 alias: downstream_activity owner: CausalAssociation domain_of: - CausalAssociation range: Activity type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CausalAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CausalAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CausalAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CausalPredicateEnum/","text":"Enum: CausalPredicateEnum URI: CausalPredicateEnum Permissible Values Value Meaning Description causally upstream of, positive effect RO:0002304 causally upstream of, negative effect RO:0002305 causally upstream of RO:0002411 immediately causally upstream of RO:0002412 causally upstream of or within RO:0002418 causally upstream of or within, negative effect RO:0004046 causally upstream of or within, positive effect RO:0004047 regulates RO:0002211 negatively regulates RO:0002212 positively regulates RO:0002213 Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: CausalPredicateEnum from_schema: https://w3id.org/gocam rank: 1000 permissible_values: causally upstream of, positive effect: text: causally upstream of, positive effect meaning: RO:0002304 causally upstream of, negative effect: text: causally upstream of, negative effect meaning: RO:0002305 causally upstream of: text: causally upstream of meaning: RO:0002411 immediately causally upstream of: text: immediately causally upstream of meaning: RO:0002412 causally upstream of or within: text: causally upstream of or within meaning: RO:0002418 causally upstream of or within, negative effect: text: causally upstream of or within, negative effect meaning: RO:0004046 causally upstream of or within, positive effect: text: causally upstream of or within, positive effect meaning: RO:0004047 regulates: text: regulates meaning: RO:0002211 negatively regulates: text: negatively regulates meaning: RO:0002212 positively regulates: text: positively regulates meaning: RO:0002213","title":"Enum: CausalPredicateEnum"},{"location":"CausalPredicateEnum/#enum-causalpredicateenum","text":"URI: CausalPredicateEnum","title":"Enum: CausalPredicateEnum"},{"location":"CausalPredicateEnum/#permissible-values","text":"Value Meaning Description causally upstream of, positive effect RO:0002304 causally upstream of, negative effect RO:0002305 causally upstream of RO:0002411 immediately causally upstream of RO:0002412 causally upstream of or within RO:0002418 causally upstream of or within, negative effect RO:0004046 causally upstream of or within, positive effect RO:0004047 regulates RO:0002211 negatively regulates RO:0002212 positively regulates RO:0002213","title":"Permissible Values"},{"location":"CausalPredicateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CausalPredicateEnum/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CausalPredicateEnum/#linkml-source","text":"name: CausalPredicateEnum from_schema: https://w3id.org/gocam rank: 1000 permissible_values: causally upstream of, positive effect: text: causally upstream of, positive effect meaning: RO:0002304 causally upstream of, negative effect: text: causally upstream of, negative effect meaning: RO:0002305 causally upstream of: text: causally upstream of meaning: RO:0002411 immediately causally upstream of: text: immediately causally upstream of meaning: RO:0002412 causally upstream of or within: text: causally upstream of or within meaning: RO:0002418 causally upstream of or within, negative effect: text: causally upstream of or within, negative effect meaning: RO:0004046 causally upstream of or within, positive effect: text: causally upstream of or within, positive effect meaning: RO:0004047 regulates: text: regulates meaning: RO:0002211 negatively regulates: text: negatively regulates meaning: RO:0002212 positively regulates: text: positively regulates meaning: RO:0002213","title":"LinkML Source"},{"location":"CellTypeAssociation/","text":"Class: CellTypeAssociation An association between an activity and a cell type term URI: gocam:CellTypeAssociation classDiagram class CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- CellTypeAssociation click TermAssociation href \"../TermAssociation\" CellTypeAssociation : evidence CellTypeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellTypeAssociation : provenances CellTypeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellTypeAssociation : term CellTypeAssociation --> \"0..1\" CellTypeTermObject : term click CellTypeTermObject href \"../CellTypeTermObject\" CellTypeAssociation : type Inheritance Association TermAssociation CellTypeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 CellTypeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellTypeAssociation native gocam:CellTypeAssociation LinkML Source Direct name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation Induced name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellTypeAssociation domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellTypeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellTypeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellTypeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CellTypeAssociation"},{"location":"CellTypeAssociation/#class-celltypeassociation","text":"An association between an activity and a cell type term URI: gocam:CellTypeAssociation classDiagram class CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- CellTypeAssociation click TermAssociation href \"../TermAssociation\" CellTypeAssociation : evidence CellTypeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellTypeAssociation : provenances CellTypeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellTypeAssociation : term CellTypeAssociation --> \"0..1\" CellTypeTermObject : term click CellTypeTermObject href \"../CellTypeTermObject\" CellTypeAssociation : type","title":"Class: CellTypeAssociation"},{"location":"CellTypeAssociation/#inheritance","text":"Association TermAssociation CellTypeAssociation","title":"Inheritance"},{"location":"CellTypeAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 CellTypeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CellTypeAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellTypeAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellTypeAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CellTypeAssociation native gocam:CellTypeAssociation","title":"Mappings"},{"location":"CellTypeAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellTypeAssociation/#direct","text":"name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation","title":"Direct"},{"location":"CellTypeAssociation/#induced","text":"name: CellTypeAssociation description: An association between an activity and a cell type term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellTypeAssociation domain_of: - EvidenceItem - TermAssociation range: CellTypeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellTypeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellTypeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellTypeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CellTypeTermObject/","text":"Class: CellTypeTermObject A term object that represents a cell type term from CL URI: gocam:CellTypeTermObject classDiagram class CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- CellTypeTermObject click TermObject href \"../TermObject\" CellTypeTermObject : id CellTypeTermObject : label CellTypeTermObject : obsolete CellTypeTermObject : type Inheritance Object TermObject CellTypeTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CellTypeAssociation term range CellTypeTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: CL PO FAO DDANAT Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellTypeTermObject native gocam:CellTypeTermObject LinkML Source Direct name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject Induced name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellTypeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellTypeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellTypeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellTypeTermObject domain_of: - Object range: boolean","title":"Class: CellTypeTermObject"},{"location":"CellTypeTermObject/#class-celltypetermobject","text":"A term object that represents a cell type term from CL URI: gocam:CellTypeTermObject classDiagram class CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- CellTypeTermObject click TermObject href \"../TermObject\" CellTypeTermObject : id CellTypeTermObject : label CellTypeTermObject : obsolete CellTypeTermObject : type","title":"Class: CellTypeTermObject"},{"location":"CellTypeTermObject/#inheritance","text":"Object TermObject CellTypeTermObject","title":"Inheritance"},{"location":"CellTypeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"CellTypeTermObject/#usages","text":"used by used in type used CellTypeAssociation term range CellTypeTermObject","title":"Usages"},{"location":"CellTypeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellTypeTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: CL PO FAO DDANAT","title":"Valid ID Prefixes"},{"location":"CellTypeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellTypeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:CellTypeTermObject native gocam:CellTypeTermObject","title":"Mappings"},{"location":"CellTypeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellTypeTermObject/#direct","text":"name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"CellTypeTermObject/#induced","text":"name: CellTypeTermObject id_prefixes: - CL - PO - FAO - DDANAT description: A term object that represents a cell type term from CL from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellTypeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellTypeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellTypeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellTypeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"CellularAnatomicalEntityAssociation/","text":"Class: CellularAnatomicalEntityAssociation An association between an activity and a cellular anatomical entity term URI: gocam:CellularAnatomicalEntityAssociation classDiagram class CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click TermAssociation href \"../TermAssociation\" CellularAnatomicalEntityAssociation : evidence CellularAnatomicalEntityAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellularAnatomicalEntityAssociation : provenances CellularAnatomicalEntityAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellularAnatomicalEntityAssociation : term CellularAnatomicalEntityAssociation --> \"0..1\" CellularAnatomicalEntityTermObject : term click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" CellularAnatomicalEntityAssociation : type Inheritance Association TermAssociation CellularAnatomicalEntityAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 CellularAnatomicalEntityTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity occurs_in range CellularAnatomicalEntityAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellularAnatomicalEntityAssociation native gocam:CellularAnatomicalEntityAssociation LinkML Source Direct name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation Induced name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellularAnatomicalEntityAssociation domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellularAnatomicalEntityAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellularAnatomicalEntityAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellularAnatomicalEntityAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: CellularAnatomicalEntityAssociation"},{"location":"CellularAnatomicalEntityAssociation/#class-cellularanatomicalentityassociation","text":"An association between an activity and a cellular anatomical entity term URI: gocam:CellularAnatomicalEntityAssociation classDiagram class CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click TermAssociation href \"../TermAssociation\" CellularAnatomicalEntityAssociation : evidence CellularAnatomicalEntityAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" CellularAnatomicalEntityAssociation : provenances CellularAnatomicalEntityAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" CellularAnatomicalEntityAssociation : term CellularAnatomicalEntityAssociation --> \"0..1\" CellularAnatomicalEntityTermObject : term click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" CellularAnatomicalEntityAssociation : type","title":"Class: CellularAnatomicalEntityAssociation"},{"location":"CellularAnatomicalEntityAssociation/#inheritance","text":"Association TermAssociation CellularAnatomicalEntityAssociation","title":"Inheritance"},{"location":"CellularAnatomicalEntityAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 CellularAnatomicalEntityTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"CellularAnatomicalEntityAssociation/#usages","text":"used by used in type used Activity occurs_in range CellularAnatomicalEntityAssociation","title":"Usages"},{"location":"CellularAnatomicalEntityAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellularAnatomicalEntityAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellularAnatomicalEntityAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:CellularAnatomicalEntityAssociation native gocam:CellularAnatomicalEntityAssociation","title":"Mappings"},{"location":"CellularAnatomicalEntityAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellularAnatomicalEntityAssociation/#direct","text":"name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation","title":"Direct"},{"location":"CellularAnatomicalEntityAssociation/#induced","text":"name: CellularAnatomicalEntityAssociation description: An association between an activity and a cellular anatomical entity term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject part_of: name: part_of range: CellTypeAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: CellularAnatomicalEntityAssociation domain_of: - EvidenceItem - TermAssociation range: CellularAnatomicalEntityTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: CellularAnatomicalEntityAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: CellularAnatomicalEntityAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: CellularAnatomicalEntityAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"CellularAnatomicalEntityTermObject/","text":"Class: CellularAnatomicalEntityTermObject A term object that represents a cellular anatomical entity term from GO URI: gocam:CellularAnatomicalEntityTermObject classDiagram class CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click TermObject href \"../TermObject\" CellularAnatomicalEntityTermObject : id CellularAnatomicalEntityTermObject : label CellularAnatomicalEntityTermObject : obsolete CellularAnatomicalEntityTermObject : type Inheritance Object TermObject CellularAnatomicalEntityTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CellularAnatomicalEntityAssociation term range CellularAnatomicalEntityTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:CellularAnatomicalEntityTermObject native gocam:CellularAnatomicalEntityTermObject LinkML Source Direct name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellularAnatomicalEntityTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellularAnatomicalEntityTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellularAnatomicalEntityTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellularAnatomicalEntityTermObject domain_of: - Object range: boolean","title":"Class: CellularAnatomicalEntityTermObject"},{"location":"CellularAnatomicalEntityTermObject/#class-cellularanatomicalentitytermobject","text":"A term object that represents a cellular anatomical entity term from GO URI: gocam:CellularAnatomicalEntityTermObject classDiagram class CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click TermObject href \"../TermObject\" CellularAnatomicalEntityTermObject : id CellularAnatomicalEntityTermObject : label CellularAnatomicalEntityTermObject : obsolete CellularAnatomicalEntityTermObject : type","title":"Class: CellularAnatomicalEntityTermObject"},{"location":"CellularAnatomicalEntityTermObject/#inheritance","text":"Object TermObject CellularAnatomicalEntityTermObject","title":"Inheritance"},{"location":"CellularAnatomicalEntityTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"CellularAnatomicalEntityTermObject/#usages","text":"used by used in type used CellularAnatomicalEntityAssociation term range CellularAnatomicalEntityTermObject","title":"Usages"},{"location":"CellularAnatomicalEntityTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CellularAnatomicalEntityTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"CellularAnatomicalEntityTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"CellularAnatomicalEntityTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:CellularAnatomicalEntityTermObject native gocam:CellularAnatomicalEntityTermObject","title":"Mappings"},{"location":"CellularAnatomicalEntityTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"CellularAnatomicalEntityTermObject/#direct","text":"name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"CellularAnatomicalEntityTermObject/#induced","text":"name: CellularAnatomicalEntityTermObject id_prefixes: - GO description: A term object that represents a cellular anatomical entity term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: CellularAnatomicalEntityTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: CellularAnatomicalEntityTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: CellularAnatomicalEntityTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: CellularAnatomicalEntityTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Date/","text":"Type: Date a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceItem/","text":"Class: EvidenceItem An individual piece of evidence that is associated with an assertion in a model URI: gocam:EvidenceItem classDiagram class EvidenceItem click EvidenceItem href \"../EvidenceItem\" EvidenceItem : provenances EvidenceItem --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" EvidenceItem : reference EvidenceItem --> \"0..1\" PublicationObject : reference click PublicationObject href \"../PublicationObject\" EvidenceItem : term EvidenceItem --> \"0..1\" EvidenceTermObject : term click EvidenceTermObject href \"../EvidenceTermObject\" EvidenceItem : with_objects EvidenceItem --> \"*\" Object : with_objects click Object href \"../Object\" Slots Name Cardinality and Range Description Inheritance term 0..1 EvidenceTermObject The ECO term representing the type of evidence direct reference 0..1 PublicationObject The publication of reference that describes the evidence direct with_objects * Object Supporting database entities or terms direct provenances * ProvenanceInfo Provenance about the assertion, e direct Usages used by used in type used Association evidence range EvidenceItem CausalAssociation evidence range EvidenceItem TermAssociation evidence range EvidenceItem MolecularFunctionAssociation evidence range EvidenceItem BiologicalProcessAssociation evidence range EvidenceItem CellularAnatomicalEntityAssociation evidence range EvidenceItem CellTypeAssociation evidence range EvidenceItem GrossAnatomyAssociation evidence range EvidenceItem MoleculeAssociation evidence range EvidenceItem Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:EvidenceItem native gocam:EvidenceItem LinkML Source Direct name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 alias: term owner: EvidenceItem domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 alias: reference owner: EvidenceItem domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true alias: with_objects owner: EvidenceItem domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: EvidenceItem domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: EvidenceItem"},{"location":"EvidenceItem/#class-evidenceitem","text":"An individual piece of evidence that is associated with an assertion in a model URI: gocam:EvidenceItem classDiagram class EvidenceItem click EvidenceItem href \"../EvidenceItem\" EvidenceItem : provenances EvidenceItem --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" EvidenceItem : reference EvidenceItem --> \"0..1\" PublicationObject : reference click PublicationObject href \"../PublicationObject\" EvidenceItem : term EvidenceItem --> \"0..1\" EvidenceTermObject : term click EvidenceTermObject href \"../EvidenceTermObject\" EvidenceItem : with_objects EvidenceItem --> \"*\" Object : with_objects click Object href \"../Object\"","title":"Class: EvidenceItem"},{"location":"EvidenceItem/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 EvidenceTermObject The ECO term representing the type of evidence direct reference 0..1 PublicationObject The publication of reference that describes the evidence direct with_objects * Object Supporting database entities or terms direct provenances * ProvenanceInfo Provenance about the assertion, e direct","title":"Slots"},{"location":"EvidenceItem/#usages","text":"used by used in type used Association evidence range EvidenceItem CausalAssociation evidence range EvidenceItem TermAssociation evidence range EvidenceItem MolecularFunctionAssociation evidence range EvidenceItem BiologicalProcessAssociation evidence range EvidenceItem CellularAnatomicalEntityAssociation evidence range EvidenceItem CellTypeAssociation evidence range EvidenceItem GrossAnatomyAssociation evidence range EvidenceItem MoleculeAssociation evidence range EvidenceItem","title":"Usages"},{"location":"EvidenceItem/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EvidenceItem/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceItem/#mappings","text":"Mapping Type Mapped Value self gocam:EvidenceItem native gocam:EvidenceItem","title":"Mappings"},{"location":"EvidenceItem/#linkml-source","text":"","title":"LinkML Source"},{"location":"EvidenceItem/#direct","text":"name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"EvidenceItem/#induced","text":"name: EvidenceItem description: An individual piece of evidence that is associated with an assertion in a model from_schema: https://w3id.org/gocam attributes: term: name: term description: The ECO term representing the type of evidence from_schema: https://w3id.org/gocam rank: 1000 alias: term owner: EvidenceItem domain_of: - EvidenceItem - TermAssociation range: EvidenceTermObject reference: name: reference description: The publication of reference that describes the evidence from_schema: https://w3id.org/gocam rank: 1000 alias: reference owner: EvidenceItem domain_of: - EvidenceItem range: PublicationObject with_objects: name: with_objects description: Supporting database entities or terms from_schema: https://w3id.org/gocam aliases: - with - with/from rank: 1000 multivalued: true alias: with_objects owner: EvidenceItem domain_of: - EvidenceItem range: Object provenances: name: provenances description: Provenance about the assertion, e.g. who made it from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: EvidenceItem domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"EvidenceTermObject/","text":"Class: EvidenceTermObject A term object that represents an evidence term from ECO URI: gocam:EvidenceTermObject classDiagram class EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- EvidenceTermObject click TermObject href \"../TermObject\" EvidenceTermObject : id EvidenceTermObject : label EvidenceTermObject : obsolete EvidenceTermObject : type Inheritance Object TermObject EvidenceTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used EvidenceItem term range EvidenceTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: ECO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:EvidenceTermObject native gocam:EvidenceTermObject LinkML Source Direct name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: EvidenceTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: EvidenceTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: EvidenceTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: EvidenceTermObject domain_of: - Object range: boolean","title":"Class: EvidenceTermObject"},{"location":"EvidenceTermObject/#class-evidencetermobject","text":"A term object that represents an evidence term from ECO URI: gocam:EvidenceTermObject classDiagram class EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- EvidenceTermObject click TermObject href \"../TermObject\" EvidenceTermObject : id EvidenceTermObject : label EvidenceTermObject : obsolete EvidenceTermObject : type","title":"Class: EvidenceTermObject"},{"location":"EvidenceTermObject/#inheritance","text":"Object TermObject EvidenceTermObject","title":"Inheritance"},{"location":"EvidenceTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"EvidenceTermObject/#usages","text":"used by used in type used EvidenceItem term range EvidenceTermObject","title":"Usages"},{"location":"EvidenceTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EvidenceTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: ECO","title":"Valid ID Prefixes"},{"location":"EvidenceTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"EvidenceTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:EvidenceTermObject native gocam:EvidenceTermObject","title":"Mappings"},{"location":"EvidenceTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"EvidenceTermObject/#direct","text":"name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"EvidenceTermObject/#induced","text":"name: EvidenceTermObject id_prefixes: - ECO description: A term object that represents an evidence term from ECO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: EvidenceTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: EvidenceTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: EvidenceTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: EvidenceTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GeneProductTermObject/","text":"Class: GeneProductTermObject A term object that represents a gene product term from GO or UniProtKB URI: gocam:GeneProductTermObject classDiagram class GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" GeneProductTermObject : id GeneProductTermObject : label GeneProductTermObject : obsolete GeneProductTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GeneProductTermObject native gocam:GeneProductTermObject LinkML Source Direct name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject Induced name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GeneProductTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GeneProductTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GeneProductTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GeneProductTermObject domain_of: - Object range: boolean","title":"Class: GeneProductTermObject"},{"location":"GeneProductTermObject/#class-geneproducttermobject","text":"A term object that represents a gene product term from GO or UniProtKB URI: gocam:GeneProductTermObject classDiagram class GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" GeneProductTermObject : id GeneProductTermObject : label GeneProductTermObject : obsolete GeneProductTermObject : type","title":"Class: GeneProductTermObject"},{"location":"GeneProductTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject","title":"Inheritance"},{"location":"GeneProductTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"GeneProductTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GeneProductTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GeneProductTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:GeneProductTermObject native gocam:GeneProductTermObject","title":"Mappings"},{"location":"GeneProductTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"GeneProductTermObject/#direct","text":"name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject","title":"Direct"},{"location":"GeneProductTermObject/#induced","text":"name: GeneProductTermObject description: A term object that represents a gene product term from GO or UniProtKB from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GeneProductTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GeneProductTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GeneProductTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GeneProductTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"GrossAnatomicalStructureTermObject/","text":"Class: GrossAnatomicalStructureTermObject A term object that represents a gross anatomical structure term from UBERON URI: gocam:GrossAnatomicalStructureTermObject classDiagram class GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click TermObject href \"../TermObject\" GrossAnatomicalStructureTermObject : id GrossAnatomicalStructureTermObject : label GrossAnatomicalStructureTermObject : obsolete GrossAnatomicalStructureTermObject : type Inheritance Object TermObject GrossAnatomicalStructureTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used GrossAnatomyAssociation term range GrossAnatomicalStructureTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: UBERON PO FAO DDANAT Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GrossAnatomicalStructureTermObject native gocam:GrossAnatomicalStructureTermObject LinkML Source Direct name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject Induced name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GrossAnatomicalStructureTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GrossAnatomicalStructureTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GrossAnatomicalStructureTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GrossAnatomicalStructureTermObject domain_of: - Object range: boolean","title":"Class: GrossAnatomicalStructureTermObject"},{"location":"GrossAnatomicalStructureTermObject/#class-grossanatomicalstructuretermobject","text":"A term object that represents a gross anatomical structure term from UBERON URI: gocam:GrossAnatomicalStructureTermObject classDiagram class GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click TermObject href \"../TermObject\" GrossAnatomicalStructureTermObject : id GrossAnatomicalStructureTermObject : label GrossAnatomicalStructureTermObject : obsolete GrossAnatomicalStructureTermObject : type","title":"Class: GrossAnatomicalStructureTermObject"},{"location":"GrossAnatomicalStructureTermObject/#inheritance","text":"Object TermObject GrossAnatomicalStructureTermObject","title":"Inheritance"},{"location":"GrossAnatomicalStructureTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"GrossAnatomicalStructureTermObject/#usages","text":"used by used in type used GrossAnatomyAssociation term range GrossAnatomicalStructureTermObject","title":"Usages"},{"location":"GrossAnatomicalStructureTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GrossAnatomicalStructureTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: UBERON PO FAO DDANAT","title":"Valid ID Prefixes"},{"location":"GrossAnatomicalStructureTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GrossAnatomicalStructureTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:GrossAnatomicalStructureTermObject native gocam:GrossAnatomicalStructureTermObject","title":"Mappings"},{"location":"GrossAnatomicalStructureTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"GrossAnatomicalStructureTermObject/#direct","text":"name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"GrossAnatomicalStructureTermObject/#induced","text":"name: GrossAnatomicalStructureTermObject id_prefixes: - UBERON - PO - FAO - DDANAT description: A term object that represents a gross anatomical structure term from UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: GrossAnatomicalStructureTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: GrossAnatomicalStructureTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: GrossAnatomicalStructureTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: GrossAnatomicalStructureTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"GrossAnatomyAssociation/","text":"Class: GrossAnatomyAssociation An association between an activity and a gross anatomical structure term URI: gocam:GrossAnatomyAssociation classDiagram class GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- GrossAnatomyAssociation click TermAssociation href \"../TermAssociation\" GrossAnatomyAssociation : evidence GrossAnatomyAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" GrossAnatomyAssociation : provenances GrossAnatomyAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" GrossAnatomyAssociation : term GrossAnatomyAssociation --> \"0..1\" GrossAnatomicalStructureTermObject : term click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" GrossAnatomyAssociation : type Inheritance Association TermAssociation GrossAnatomyAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 GrossAnatomicalStructureTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:GrossAnatomyAssociation native gocam:GrossAnatomyAssociation LinkML Source Direct name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation Induced name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: GrossAnatomyAssociation domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: GrossAnatomyAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: GrossAnatomyAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: GrossAnatomyAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: GrossAnatomyAssociation"},{"location":"GrossAnatomyAssociation/#class-grossanatomyassociation","text":"An association between an activity and a gross anatomical structure term URI: gocam:GrossAnatomyAssociation classDiagram class GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- GrossAnatomyAssociation click TermAssociation href \"../TermAssociation\" GrossAnatomyAssociation : evidence GrossAnatomyAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" GrossAnatomyAssociation : provenances GrossAnatomyAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" GrossAnatomyAssociation : term GrossAnatomyAssociation --> \"0..1\" GrossAnatomicalStructureTermObject : term click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" GrossAnatomyAssociation : type","title":"Class: GrossAnatomyAssociation"},{"location":"GrossAnatomyAssociation/#inheritance","text":"Association TermAssociation GrossAnatomyAssociation","title":"Inheritance"},{"location":"GrossAnatomyAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 GrossAnatomicalStructureTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"GrossAnatomyAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"GrossAnatomyAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"GrossAnatomyAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:GrossAnatomyAssociation native gocam:GrossAnatomyAssociation","title":"Mappings"},{"location":"GrossAnatomyAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"GrossAnatomyAssociation/#direct","text":"name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation","title":"Direct"},{"location":"GrossAnatomyAssociation/#induced","text":"name: GrossAnatomyAssociation description: An association between an activity and a gross anatomical structure term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject part_of: name: part_of range: GrossAnatomyAssociation attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: GrossAnatomyAssociation domain_of: - EvidenceItem - TermAssociation range: GrossAnatomicalStructureTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: GrossAnatomyAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: GrossAnatomyAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: GrossAnatomyAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"InformationBiomacromoleculeCategory/","text":"Enum: InformationBiomacromoleculeCategory URI: InformationBiomacromoleculeCategory Permissible Values Value Meaning Description GeneOrReferenceProtein biolink.GeneOrGeneProduct ProteinIsoform None MacromolecularComplex None Unknown None Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: InformationBiomacromoleculeCategory from_schema: https://w3id.org/gocam rank: 1000 permissible_values: GeneOrReferenceProtein: text: GeneOrReferenceProtein meaning: biolink.GeneOrGeneProduct ProteinIsoform: text: ProteinIsoform MacromolecularComplex: text: MacromolecularComplex Unknown: text: Unknown","title":"Enum: InformationBiomacromoleculeCategory"},{"location":"InformationBiomacromoleculeCategory/#enum-informationbiomacromoleculecategory","text":"URI: InformationBiomacromoleculeCategory","title":"Enum: InformationBiomacromoleculeCategory"},{"location":"InformationBiomacromoleculeCategory/#permissible-values","text":"Value Meaning Description GeneOrReferenceProtein biolink.GeneOrGeneProduct ProteinIsoform None MacromolecularComplex None Unknown None","title":"Permissible Values"},{"location":"InformationBiomacromoleculeCategory/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"InformationBiomacromoleculeCategory/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"InformationBiomacromoleculeCategory/#linkml-source","text":"name: InformationBiomacromoleculeCategory from_schema: https://w3id.org/gocam rank: 1000 permissible_values: GeneOrReferenceProtein: text: GeneOrReferenceProtein meaning: biolink.GeneOrGeneProduct ProteinIsoform: text: ProteinIsoform MacromolecularComplex: text: MacromolecularComplex Unknown: text: Unknown","title":"LinkML Source"},{"location":"InformationBiomacromoleculeTermObject/","text":"Class: InformationBiomacromoleculeTermObject An abstract class for all information biomacromolecule term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:InformationBiomacromoleculeTermObject classDiagram class InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click TermObject href \"../TermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject : id InformationBiomacromoleculeTermObject : label InformationBiomacromoleculeTermObject : obsolete InformationBiomacromoleculeTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject ProteinComplexTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used Activity enabled_by range InformationBiomacromoleculeTermObject Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:InformationBiomacromoleculeTermObject native gocam:InformationBiomacromoleculeTermObject LinkML Source Direct name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true Induced name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: InformationBiomacromoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: InformationBiomacromoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: InformationBiomacromoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: InformationBiomacromoleculeTermObject domain_of: - Object range: boolean","title":"Class: InformationBiomacromoleculeTermObject"},{"location":"InformationBiomacromoleculeTermObject/#class-informationbiomacromoleculetermobject","text":"An abstract class for all information biomacromolecule term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:InformationBiomacromoleculeTermObject classDiagram class InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click TermObject href \"../TermObject\" InformationBiomacromoleculeTermObject <|-- GeneProductTermObject click GeneProductTermObject href \"../GeneProductTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject : id InformationBiomacromoleculeTermObject : label InformationBiomacromoleculeTermObject : obsolete InformationBiomacromoleculeTermObject : type","title":"Class: InformationBiomacromoleculeTermObject"},{"location":"InformationBiomacromoleculeTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject GeneProductTermObject ProteinComplexTermObject","title":"Inheritance"},{"location":"InformationBiomacromoleculeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"InformationBiomacromoleculeTermObject/#usages","text":"used by used in type used Activity enabled_by range InformationBiomacromoleculeTermObject","title":"Usages"},{"location":"InformationBiomacromoleculeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"InformationBiomacromoleculeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"InformationBiomacromoleculeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:InformationBiomacromoleculeTermObject native gocam:InformationBiomacromoleculeTermObject","title":"Mappings"},{"location":"InformationBiomacromoleculeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"InformationBiomacromoleculeTermObject/#direct","text":"name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true","title":"Direct"},{"location":"InformationBiomacromoleculeTermObject/#induced","text":"name: InformationBiomacromoleculeTermObject description: An abstract class for all information biomacromolecule term objects from_schema: https://w3id.org/gocam is_a: TermObject abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: InformationBiomacromoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: InformationBiomacromoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: InformationBiomacromoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: InformationBiomacromoleculeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Model/","text":"Class: Model A model of a biological program consisting of a set of causally connected activities URI: gocam:Model classDiagram class Model click Model href \"../Model\" Model : activities Model --> \"*\" Activity : activities click Activity href \"../Activity\" Model : comments Model : id Model : objects Model --> \"*\" Object : objects click Object href \"../Object\" Model : provenances Model --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Model : status Model --> \"0..1\" ModelStateEnum : status click ModelStateEnum href \"../ModelStateEnum\" Model : taxon Model --> \"0..1\" TaxonTermObject : taxon click TaxonTermObject href \"../TaxonTermObject\" Model : title Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie The identifier of the model direct title 0..1 String The human-readable descriptive title of the model direct taxon 0..1 TaxonTermObject The primary taxon that the model is about direct status 0..1 ModelStateEnum The status of the model direct comments * String Comments about the model direct activities * Activity All of the activities that are part of the model direct objects * Object All of the objects that are part of the model direct provenances * ProvenanceInfo Model-level provenance information direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Model native gocam:Model LinkML Source Direct name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title domain_of: - Model taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true domain_of: - Model activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Activity inlined: true inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Object inlined: true inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true Induced name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true alias: id owner: Model domain_of: - Model - Activity - Object range: uriorcurie title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title alias: title owner: Model domain_of: - Model range: string taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 alias: taxon owner: Model domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status alias: status owner: Model domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true alias: comments owner: Model domain_of: - Model range: string activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - Model range: Activity inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: objects owner: Model domain_of: - Model range: Object inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: provenances owner: Model domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined_as_list: true","title":"Class: Model"},{"location":"Model/#class-model","text":"A model of a biological program consisting of a set of causally connected activities URI: gocam:Model classDiagram class Model click Model href \"../Model\" Model : activities Model --> \"*\" Activity : activities click Activity href \"../Activity\" Model : comments Model : id Model : objects Model --> \"*\" Object : objects click Object href \"../Object\" Model : provenances Model --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" Model : status Model --> \"0..1\" ModelStateEnum : status click ModelStateEnum href \"../ModelStateEnum\" Model : taxon Model --> \"0..1\" TaxonTermObject : taxon click TaxonTermObject href \"../TaxonTermObject\" Model : title","title":"Class: Model"},{"location":"Model/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie The identifier of the model direct title 0..1 String The human-readable descriptive title of the model direct taxon 0..1 TaxonTermObject The primary taxon that the model is about direct status 0..1 ModelStateEnum The status of the model direct comments * String Comments about the model direct activities * Activity All of the activities that are part of the model direct objects * Object All of the objects that are part of the model direct provenances * ProvenanceInfo Model-level provenance information direct","title":"Slots"},{"location":"Model/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Model/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Model/#mappings","text":"Mapping Type Mapped Value self gocam:Model native gocam:Model","title":"Mappings"},{"location":"Model/#linkml-source","text":"","title":"LinkML Source"},{"location":"Model/#direct","text":"name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title domain_of: - Model taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true domain_of: - Model activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Activity inlined: true inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model range: Object inlined: true inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Direct"},{"location":"Model/#induced","text":"name: Model description: A model of a biological program consisting of a set of causally connected activities from_schema: https://w3id.org/gocam attributes: id: name: id description: The identifier of the model. Should be in gocam namespace. from_schema: https://w3id.org/gocam rank: 1000 identifier: true alias: id owner: Model domain_of: - Model - Activity - Object range: uriorcurie title: name: title description: The human-readable descriptive title of the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:title alias: title owner: Model domain_of: - Model range: string taxon: name: taxon description: The primary taxon that the model is about from_schema: https://w3id.org/gocam rank: 1000 alias: taxon owner: Model domain_of: - Model range: TaxonTermObject status: name: status description: The status of the model from_schema: https://w3id.org/gocam aliases: - model state rank: 1000 slot_uri: pav:status alias: status owner: Model domain_of: - Model range: ModelStateEnum comments: name: comments description: Comments about the model from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:comment multivalued: true alias: comments owner: Model domain_of: - Model range: string activities: name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - Model range: Activity inlined_as_list: true objects: name: objects description: All of the objects that are part of the model. This includes terms as well as publications and database objects like gene. This is not strictly part of the data managed by the model, it is for convenience, and should be refreshed from outside. from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: objects owner: Model domain_of: - Model range: Object inlined_as_list: true provenances: name: provenances description: Model-level provenance information from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: provenances owner: Model domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined_as_list: true","title":"Induced"},{"location":"ModelStateEnum/","text":"Enum: ModelStateEnum Status of a model URI: ModelStateEnum Permissible Values Value Meaning Description production None development None Slots Name Description status The status of the model Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: ModelStateEnum description: Status of a model from_schema: https://w3id.org/gocam rank: 1000 permissible_values: production: text: production development: text: development","title":"Enum: ModelStateEnum"},{"location":"ModelStateEnum/#enum-modelstateenum","text":"Status of a model URI: ModelStateEnum","title":"Enum: ModelStateEnum"},{"location":"ModelStateEnum/#permissible-values","text":"Value Meaning Description production None development None","title":"Permissible Values"},{"location":"ModelStateEnum/#slots","text":"Name Description status The status of the model","title":"Slots"},{"location":"ModelStateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ModelStateEnum/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ModelStateEnum/#linkml-source","text":"name: ModelStateEnum description: Status of a model from_schema: https://w3id.org/gocam rank: 1000 permissible_values: production: text: production development: text: development","title":"LinkML Source"},{"location":"MolecularFunctionAssociation/","text":"Class: MolecularFunctionAssociation An association between an activity and a molecular function term URI: gocam:MolecularFunctionAssociation classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href \"../TermAssociation\" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MolecularFunctionAssociation : term MolecularFunctionAssociation --> \"0..1\" MolecularFunctionTermObject : term click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" MolecularFunctionAssociation : type Inheritance Association TermAssociation MolecularFunctionAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 MolecularFunctionTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity molecular_function range MolecularFunctionAssociation TODOs account for non-MF activity types in Reactome Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MolecularFunctionAssociation native gocam:MolecularFunctionAssociation LinkML Source Direct name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject Induced name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MolecularFunctionAssociation domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MolecularFunctionAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MolecularFunctionAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MolecularFunctionAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: MolecularFunctionAssociation"},{"location":"MolecularFunctionAssociation/#class-molecularfunctionassociation","text":"An association between an activity and a molecular function term URI: gocam:MolecularFunctionAssociation classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href \"../TermAssociation\" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MolecularFunctionAssociation : term MolecularFunctionAssociation --> \"0..1\" MolecularFunctionTermObject : term click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" MolecularFunctionAssociation : type","title":"Class: MolecularFunctionAssociation"},{"location":"MolecularFunctionAssociation/#inheritance","text":"Association TermAssociation MolecularFunctionAssociation","title":"Inheritance"},{"location":"MolecularFunctionAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 MolecularFunctionTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"MolecularFunctionAssociation/#usages","text":"used by used in type used Activity molecular_function range MolecularFunctionAssociation","title":"Usages"},{"location":"MolecularFunctionAssociation/#todos","text":"account for non-MF activity types in Reactome","title":"TODOs"},{"location":"MolecularFunctionAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MolecularFunctionAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MolecularFunctionAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:MolecularFunctionAssociation native gocam:MolecularFunctionAssociation","title":"Mappings"},{"location":"MolecularFunctionAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"MolecularFunctionAssociation/#direct","text":"name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject","title":"Direct"},{"location":"MolecularFunctionAssociation/#induced","text":"name: MolecularFunctionAssociation description: An association between an activity and a molecular function term todos: - account for non-MF activity types in Reactome from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MolecularFunctionAssociation domain_of: - EvidenceItem - TermAssociation range: MolecularFunctionTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MolecularFunctionAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MolecularFunctionAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MolecularFunctionAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"MolecularFunctionTermObject/","text":"Class: MolecularFunctionTermObject A term object that represents a molecular function term from GO URI: gocam:MolecularFunctionTermObject classDiagram class MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- MolecularFunctionTermObject click TermObject href \"../TermObject\" MolecularFunctionTermObject : id MolecularFunctionTermObject : label MolecularFunctionTermObject : obsolete MolecularFunctionTermObject : type Inheritance Object TermObject MolecularFunctionTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used MolecularFunctionAssociation term range MolecularFunctionTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MolecularFunctionTermObject native gocam:MolecularFunctionTermObject LinkML Source Direct name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject Induced name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MolecularFunctionTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MolecularFunctionTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MolecularFunctionTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MolecularFunctionTermObject domain_of: - Object range: boolean","title":"Class: MolecularFunctionTermObject"},{"location":"MolecularFunctionTermObject/#class-molecularfunctiontermobject","text":"A term object that represents a molecular function term from GO URI: gocam:MolecularFunctionTermObject classDiagram class MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- MolecularFunctionTermObject click TermObject href \"../TermObject\" MolecularFunctionTermObject : id MolecularFunctionTermObject : label MolecularFunctionTermObject : obsolete MolecularFunctionTermObject : type","title":"Class: MolecularFunctionTermObject"},{"location":"MolecularFunctionTermObject/#inheritance","text":"Object TermObject MolecularFunctionTermObject","title":"Inheritance"},{"location":"MolecularFunctionTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"MolecularFunctionTermObject/#usages","text":"used by used in type used MolecularFunctionAssociation term range MolecularFunctionTermObject","title":"Usages"},{"location":"MolecularFunctionTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MolecularFunctionTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO","title":"Valid ID Prefixes"},{"location":"MolecularFunctionTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MolecularFunctionTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:MolecularFunctionTermObject native gocam:MolecularFunctionTermObject","title":"Mappings"},{"location":"MolecularFunctionTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"MolecularFunctionTermObject/#direct","text":"name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"MolecularFunctionTermObject/#induced","text":"name: MolecularFunctionTermObject id_prefixes: - GO description: A term object that represents a molecular function term from GO from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MolecularFunctionTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MolecularFunctionTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MolecularFunctionTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MolecularFunctionTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"MoleculeAssociation/","text":"Class: MoleculeAssociation An association between an activity and a molecule term URI: gocam:MoleculeAssociation classDiagram class MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation <|-- MoleculeAssociation click TermAssociation href \"../TermAssociation\" MoleculeAssociation : evidence MoleculeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MoleculeAssociation : provenances MoleculeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MoleculeAssociation : term MoleculeAssociation --> \"0..1\" MoleculeTermObject : term click MoleculeTermObject href \"../MoleculeTermObject\" MoleculeAssociation : type Inheritance Association TermAssociation MoleculeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 MoleculeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Usages used by used in type used Activity has_direct_input range MoleculeAssociation Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MoleculeAssociation native gocam:MoleculeAssociation LinkML Source Direct name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject Induced name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MoleculeAssociation domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MoleculeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MoleculeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MoleculeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: MoleculeAssociation"},{"location":"MoleculeAssociation/#class-moleculeassociation","text":"An association between an activity and a molecule term URI: gocam:MoleculeAssociation classDiagram class MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation <|-- MoleculeAssociation click TermAssociation href \"../TermAssociation\" MoleculeAssociation : evidence MoleculeAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" MoleculeAssociation : provenances MoleculeAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" MoleculeAssociation : term MoleculeAssociation --> \"0..1\" MoleculeTermObject : term click MoleculeTermObject href \"../MoleculeTermObject\" MoleculeAssociation : type","title":"Class: MoleculeAssociation"},{"location":"MoleculeAssociation/#inheritance","text":"Association TermAssociation MoleculeAssociation","title":"Inheritance"},{"location":"MoleculeAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 MoleculeTermObject The ontology term that describes the nature of the association TermAssociation type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"MoleculeAssociation/#usages","text":"used by used in type used Activity has_direct_input range MoleculeAssociation","title":"Usages"},{"location":"MoleculeAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MoleculeAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MoleculeAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:MoleculeAssociation native gocam:MoleculeAssociation","title":"Mappings"},{"location":"MoleculeAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"MoleculeAssociation/#direct","text":"name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject","title":"Direct"},{"location":"MoleculeAssociation/#induced","text":"name: MoleculeAssociation description: An association between an activity and a molecule term from_schema: https://w3id.org/gocam is_a: TermAssociation slot_usage: term: name: term domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: MoleculeAssociation domain_of: - EvidenceItem - TermAssociation range: MoleculeTermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: MoleculeAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: MoleculeAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: MoleculeAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"MoleculeTermObject/","text":"Class: MoleculeTermObject A term object that represents a molecule term from CHEBI or UniProtKB URI: gocam:MoleculeTermObject classDiagram class MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- MoleculeTermObject click TermObject href \"../TermObject\" MoleculeTermObject : id MoleculeTermObject : label MoleculeTermObject : obsolete MoleculeTermObject : type Inheritance Object TermObject MoleculeTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used MoleculeAssociation term range MoleculeTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: CHEBI UniProtKB Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:MoleculeTermObject native gocam:MoleculeTermObject LinkML Source Direct name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject Induced name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MoleculeTermObject domain_of: - Object range: boolean","title":"Class: MoleculeTermObject"},{"location":"MoleculeTermObject/#class-moleculetermobject","text":"A term object that represents a molecule term from CHEBI or UniProtKB URI: gocam:MoleculeTermObject classDiagram class MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- MoleculeTermObject click TermObject href \"../TermObject\" MoleculeTermObject : id MoleculeTermObject : label MoleculeTermObject : obsolete MoleculeTermObject : type","title":"Class: MoleculeTermObject"},{"location":"MoleculeTermObject/#inheritance","text":"Object TermObject MoleculeTermObject","title":"Inheritance"},{"location":"MoleculeTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"MoleculeTermObject/#usages","text":"used by used in type used MoleculeAssociation term range MoleculeTermObject","title":"Usages"},{"location":"MoleculeTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"MoleculeTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: CHEBI UniProtKB","title":"Valid ID Prefixes"},{"location":"MoleculeTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"MoleculeTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:MoleculeTermObject native gocam:MoleculeTermObject","title":"Mappings"},{"location":"MoleculeTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"MoleculeTermObject/#direct","text":"name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"MoleculeTermObject/#induced","text":"name: MoleculeTermObject id_prefixes: - CHEBI - UniProtKB description: A term object that represents a molecule term from CHEBI or UniProtKB from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: MoleculeTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: MoleculeTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: MoleculeTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: MoleculeTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Object/","text":"Class: Object An abstract class for all identified objects in a model URI: gocam:Object classDiagram class Object click Object href \"../Object\" Object <|-- TermObject click TermObject href \"../TermObject\" Object <|-- PublicationObject click PublicationObject href \"../PublicationObject\" Object : id Object : label Object : obsolete Object : type Inheritance Object TermObject PublicationObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie direct label 0..1 String direct type 0..1 Uriorcurie direct obsolete 0..1 Boolean direct Usages used by used in type used Model objects range Object EvidenceItem with_objects range Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:Object native gocam:Object LinkML Source Direct name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label domain_of: - Object type: name: type from_schema: https://w3id.org/gocam designates_type: true domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Object range: boolean Induced name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: Object domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: Object domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: Object domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: Object domain_of: - Object range: boolean","title":"Class: Object"},{"location":"Object/#class-object","text":"An abstract class for all identified objects in a model URI: gocam:Object classDiagram class Object click Object href \"../Object\" Object <|-- TermObject click TermObject href \"../TermObject\" Object <|-- PublicationObject click PublicationObject href \"../PublicationObject\" Object : id Object : label Object : obsolete Object : type","title":"Class: Object"},{"location":"Object/#inheritance","text":"Object TermObject PublicationObject","title":"Inheritance"},{"location":"Object/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie direct label 0..1 String direct type 0..1 Uriorcurie direct obsolete 0..1 Boolean direct","title":"Slots"},{"location":"Object/#usages","text":"used by used in type used Model objects range Object EvidenceItem with_objects range Object","title":"Usages"},{"location":"Object/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Object/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Object/#mappings","text":"Mapping Type Mapped Value self gocam:Object native gocam:Object","title":"Mappings"},{"location":"Object/#linkml-source","text":"","title":"LinkML Source"},{"location":"Object/#direct","text":"name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label domain_of: - Object type: name: type from_schema: https://w3id.org/gocam designates_type: true domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 domain_of: - Object range: boolean","title":"Direct"},{"location":"Object/#induced","text":"name: Object description: An abstract class for all identified objects in a model from_schema: https://w3id.org/gocam attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: Object domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: Object domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: Object domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: Object domain_of: - Object range: boolean","title":"Induced"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PhaseTermObject/","text":"Class: PhaseTermObject A term object that represents a phase term from GO or UBERON URI: gocam:PhaseTermObject classDiagram class PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- PhaseTermObject click TermObject href \"../TermObject\" PhaseTermObject : id PhaseTermObject : label PhaseTermObject : obsolete PhaseTermObject : type Inheritance Object TermObject PhaseTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: GO UBERON PO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PhaseTermObject native gocam:PhaseTermObject LinkML Source Direct name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject Induced name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PhaseTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PhaseTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PhaseTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PhaseTermObject domain_of: - Object range: boolean","title":"Class: PhaseTermObject"},{"location":"PhaseTermObject/#class-phasetermobject","text":"A term object that represents a phase term from GO or UBERON URI: gocam:PhaseTermObject classDiagram class PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- PhaseTermObject click TermObject href \"../TermObject\" PhaseTermObject : id PhaseTermObject : label PhaseTermObject : obsolete PhaseTermObject : type","title":"Class: PhaseTermObject"},{"location":"PhaseTermObject/#inheritance","text":"Object TermObject PhaseTermObject","title":"Inheritance"},{"location":"PhaseTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PhaseTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PhaseTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: GO UBERON PO","title":"Valid ID Prefixes"},{"location":"PhaseTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PhaseTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:PhaseTermObject native gocam:PhaseTermObject","title":"Mappings"},{"location":"PhaseTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PhaseTermObject/#direct","text":"name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"PhaseTermObject/#induced","text":"name: PhaseTermObject id_prefixes: - GO - UBERON - PO description: A term object that represents a phase term from GO or UBERON from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PhaseTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PhaseTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PhaseTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PhaseTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"PredicateTermObject/","text":"Class: PredicateTermObject A term object that represents a taxon term from NCBITaxon URI: gocam:PredicateTermObject classDiagram class PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject <|-- PredicateTermObject click TermObject href \"../TermObject\" PredicateTermObject : id PredicateTermObject : label PredicateTermObject : obsolete PredicateTermObject : type Inheritance Object TermObject PredicateTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used CausalAssociation predicate range PredicateTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: RO Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PredicateTermObject native gocam:PredicateTermObject LinkML Source Direct name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject Induced name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PredicateTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PredicateTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PredicateTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PredicateTermObject domain_of: - Object range: boolean","title":"Class: PredicateTermObject"},{"location":"PredicateTermObject/#class-predicatetermobject","text":"A term object that represents a taxon term from NCBITaxon URI: gocam:PredicateTermObject classDiagram class PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject <|-- PredicateTermObject click TermObject href \"../TermObject\" PredicateTermObject : id PredicateTermObject : label PredicateTermObject : obsolete PredicateTermObject : type","title":"Class: PredicateTermObject"},{"location":"PredicateTermObject/#inheritance","text":"Object TermObject PredicateTermObject","title":"Inheritance"},{"location":"PredicateTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PredicateTermObject/#usages","text":"used by used in type used CausalAssociation predicate range PredicateTermObject","title":"Usages"},{"location":"PredicateTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PredicateTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: RO","title":"Valid ID Prefixes"},{"location":"PredicateTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PredicateTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:PredicateTermObject native gocam:PredicateTermObject","title":"Mappings"},{"location":"PredicateTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PredicateTermObject/#direct","text":"name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"PredicateTermObject/#induced","text":"name: PredicateTermObject id_prefixes: - RO description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PredicateTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PredicateTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PredicateTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PredicateTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"ProteinComplexTermObject/","text":"Class: ProteinComplexTermObject A term object that represents a protein complex term from GO URI: gocam:ProteinComplexTermObject classDiagram class ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" ProteinComplexTermObject : id ProteinComplexTermObject : label ProteinComplexTermObject : obsolete ProteinComplexTermObject : type Inheritance Object TermObject InformationBiomacromoleculeTermObject ProteinComplexTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:ProteinComplexTermObject native gocam:ProteinComplexTermObject LinkML Source Direct name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject Induced name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: ProteinComplexTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: ProteinComplexTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: ProteinComplexTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: ProteinComplexTermObject domain_of: - Object range: boolean","title":"Class: ProteinComplexTermObject"},{"location":"ProteinComplexTermObject/#class-proteincomplextermobject","text":"A term object that represents a protein complex term from GO URI: gocam:ProteinComplexTermObject classDiagram class ProteinComplexTermObject click ProteinComplexTermObject href \"../ProteinComplexTermObject\" InformationBiomacromoleculeTermObject <|-- ProteinComplexTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" ProteinComplexTermObject : id ProteinComplexTermObject : label ProteinComplexTermObject : obsolete ProteinComplexTermObject : type","title":"Class: ProteinComplexTermObject"},{"location":"ProteinComplexTermObject/#inheritance","text":"Object TermObject InformationBiomacromoleculeTermObject ProteinComplexTermObject","title":"Inheritance"},{"location":"ProteinComplexTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"ProteinComplexTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ProteinComplexTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ProteinComplexTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:ProteinComplexTermObject native gocam:ProteinComplexTermObject","title":"Mappings"},{"location":"ProteinComplexTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"ProteinComplexTermObject/#direct","text":"name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject","title":"Direct"},{"location":"ProteinComplexTermObject/#induced","text":"name: ProteinComplexTermObject description: A term object that represents a protein complex term from GO from_schema: https://w3id.org/gocam is_a: InformationBiomacromoleculeTermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: ProteinComplexTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: ProteinComplexTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: ProteinComplexTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: ProteinComplexTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"ProvenanceInfo/","text":"Class: ProvenanceInfo Provenance information for an object URI: gocam:ProvenanceInfo classDiagram class ProvenanceInfo click ProvenanceInfo href \"../ProvenanceInfo\" ProvenanceInfo : contributor ProvenanceInfo : created ProvenanceInfo : date ProvenanceInfo : provided_by Slots Name Cardinality and Range Description Inheritance contributor 0..1 String direct created 0..1 String direct date 0..1 String direct provided_by 0..1 String direct Usages used by used in type used Model provenances range ProvenanceInfo Activity provenances range ProvenanceInfo EvidenceItem provenances range ProvenanceInfo Association provenances range ProvenanceInfo CausalAssociation provenances range ProvenanceInfo TermAssociation provenances range ProvenanceInfo MolecularFunctionAssociation provenances range ProvenanceInfo BiologicalProcessAssociation provenances range ProvenanceInfo CellularAnatomicalEntityAssociation provenances range ProvenanceInfo CellTypeAssociation provenances range ProvenanceInfo GrossAnatomyAssociation provenances range ProvenanceInfo MoleculeAssociation provenances range ProvenanceInfo Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:ProvenanceInfo native gocam:ProvenanceInfo LinkML Source Direct name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor domain_of: - ProvenanceInfo created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created domain_of: - ProvenanceInfo date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date domain_of: - ProvenanceInfo provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy domain_of: - ProvenanceInfo Induced name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor alias: contributor owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created alias: created owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date alias: date owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy alias: provided_by owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string","title":"Class: ProvenanceInfo"},{"location":"ProvenanceInfo/#class-provenanceinfo","text":"Provenance information for an object URI: gocam:ProvenanceInfo classDiagram class ProvenanceInfo click ProvenanceInfo href \"../ProvenanceInfo\" ProvenanceInfo : contributor ProvenanceInfo : created ProvenanceInfo : date ProvenanceInfo : provided_by","title":"Class: ProvenanceInfo"},{"location":"ProvenanceInfo/#slots","text":"Name Cardinality and Range Description Inheritance contributor 0..1 String direct created 0..1 String direct date 0..1 String direct provided_by 0..1 String direct","title":"Slots"},{"location":"ProvenanceInfo/#usages","text":"used by used in type used Model provenances range ProvenanceInfo Activity provenances range ProvenanceInfo EvidenceItem provenances range ProvenanceInfo Association provenances range ProvenanceInfo CausalAssociation provenances range ProvenanceInfo TermAssociation provenances range ProvenanceInfo MolecularFunctionAssociation provenances range ProvenanceInfo BiologicalProcessAssociation provenances range ProvenanceInfo CellularAnatomicalEntityAssociation provenances range ProvenanceInfo CellTypeAssociation provenances range ProvenanceInfo GrossAnatomyAssociation provenances range ProvenanceInfo MoleculeAssociation provenances range ProvenanceInfo","title":"Usages"},{"location":"ProvenanceInfo/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ProvenanceInfo/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"ProvenanceInfo/#mappings","text":"Mapping Type Mapped Value self gocam:ProvenanceInfo native gocam:ProvenanceInfo","title":"Mappings"},{"location":"ProvenanceInfo/#linkml-source","text":"","title":"LinkML Source"},{"location":"ProvenanceInfo/#direct","text":"name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor domain_of: - ProvenanceInfo created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created domain_of: - ProvenanceInfo date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date domain_of: - ProvenanceInfo provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy domain_of: - ProvenanceInfo","title":"Direct"},{"location":"ProvenanceInfo/#induced","text":"name: ProvenanceInfo description: Provenance information for an object from_schema: https://w3id.org/gocam attributes: contributor: name: contributor from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:contributor alias: contributor owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string created: name: created from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:created alias: created owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string date: name: date from_schema: https://w3id.org/gocam rank: 1000 slot_uri: dct:date alias: date owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string provided_by: name: provided_by from_schema: https://w3id.org/gocam rank: 1000 slot_uri: pav:providedBy alias: provided_by owner: ProvenanceInfo domain_of: - ProvenanceInfo range: string","title":"Induced"},{"location":"PublicationObject/","text":"Class: PublicationObject An object that represents a publication or other kind of reference URI: gocam:PublicationObject classDiagram class PublicationObject click PublicationObject href \"../PublicationObject\" Object <|-- PublicationObject click Object href \"../Object\" PublicationObject : abstract_text PublicationObject : full_text PublicationObject : id PublicationObject : label PublicationObject : obsolete PublicationObject : type Inheritance Object PublicationObject Slots Name Cardinality and Range Description Inheritance abstract_text 0..1 String direct full_text 0..1 String direct id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used EvidenceItem reference range PublicationObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: PMID GOREF DOI Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:PublicationObject native gocam:PublicationObject LinkML Source Direct name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject Induced name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 alias: full_text owner: PublicationObject domain_of: - PublicationObject range: string id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PublicationObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PublicationObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PublicationObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PublicationObject domain_of: - Object range: boolean","title":"Class: PublicationObject"},{"location":"PublicationObject/#class-publicationobject","text":"An object that represents a publication or other kind of reference URI: gocam:PublicationObject classDiagram class PublicationObject click PublicationObject href \"../PublicationObject\" Object <|-- PublicationObject click Object href \"../Object\" PublicationObject : abstract_text PublicationObject : full_text PublicationObject : id PublicationObject : label PublicationObject : obsolete PublicationObject : type","title":"Class: PublicationObject"},{"location":"PublicationObject/#inheritance","text":"Object PublicationObject","title":"Inheritance"},{"location":"PublicationObject/#slots","text":"Name Cardinality and Range Description Inheritance abstract_text 0..1 String direct full_text 0..1 String direct id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"PublicationObject/#usages","text":"used by used in type used EvidenceItem reference range PublicationObject","title":"Usages"},{"location":"PublicationObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PublicationObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: PMID GOREF DOI","title":"Valid ID Prefixes"},{"location":"PublicationObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"PublicationObject/#mappings","text":"Mapping Type Mapped Value self gocam:PublicationObject native gocam:PublicationObject","title":"Mappings"},{"location":"PublicationObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"PublicationObject/#direct","text":"name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 domain_of: - PublicationObject","title":"Direct"},{"location":"PublicationObject/#induced","text":"name: PublicationObject id_prefixes: - PMID - GOREF - DOI description: An object that represents a publication or other kind of reference from_schema: https://w3id.org/gocam is_a: Object attributes: abstract_text: name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string full_text: name: full_text from_schema: https://w3id.org/gocam rank: 1000 alias: full_text owner: PublicationObject domain_of: - PublicationObject range: string id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: PublicationObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: PublicationObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: PublicationObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: PublicationObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TaxonTermObject/","text":"Class: TaxonTermObject A term object that represents a taxon term from NCBITaxon URI: gocam:TaxonTermObject classDiagram class TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- TaxonTermObject click TermObject href \"../TermObject\" TaxonTermObject : id TaxonTermObject : label TaxonTermObject : obsolete TaxonTermObject : type Inheritance Object TermObject TaxonTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used Model taxon range TaxonTermObject Identifier and Mapping Information Valid ID Prefixes Instances of this class should have identifiers with one of the following prefixes: NCBITaxon Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TaxonTermObject native gocam:TaxonTermObject LinkML Source Direct name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject Induced name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TaxonTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TaxonTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TaxonTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TaxonTermObject domain_of: - Object range: boolean","title":"Class: TaxonTermObject"},{"location":"TaxonTermObject/#class-taxontermobject","text":"A term object that represents a taxon term from NCBITaxon URI: gocam:TaxonTermObject classDiagram class TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- TaxonTermObject click TermObject href \"../TermObject\" TaxonTermObject : id TaxonTermObject : label TaxonTermObject : obsolete TaxonTermObject : type","title":"Class: TaxonTermObject"},{"location":"TaxonTermObject/#inheritance","text":"Object TermObject TaxonTermObject","title":"Inheritance"},{"location":"TaxonTermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"TaxonTermObject/#usages","text":"used by used in type used Model taxon range TaxonTermObject","title":"Usages"},{"location":"TaxonTermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TaxonTermObject/#valid-id-prefixes","text":"Instances of this class should have identifiers with one of the following prefixes: NCBITaxon","title":"Valid ID Prefixes"},{"location":"TaxonTermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TaxonTermObject/#mappings","text":"Mapping Type Mapped Value self gocam:TaxonTermObject native gocam:TaxonTermObject","title":"Mappings"},{"location":"TaxonTermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"TaxonTermObject/#direct","text":"name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject","title":"Direct"},{"location":"TaxonTermObject/#induced","text":"name: TaxonTermObject id_prefixes: - NCBITaxon description: A term object that represents a taxon term from NCBITaxon from_schema: https://w3id.org/gocam is_a: TermObject attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TaxonTermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TaxonTermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TaxonTermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TaxonTermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"TermAssociation/","text":"Class: TermAssociation An association between an activity and a term, potentially with extensions NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermAssociation classDiagram class TermAssociation click TermAssociation href \"../TermAssociation\" Association <|-- TermAssociation click Association href \"../Association\" TermAssociation <|-- MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation : evidence TermAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" TermAssociation : provenances TermAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" TermAssociation : term TermAssociation --> \"0..1\" TermObject : term click TermObject href \"../TermObject\" TermAssociation : type Inheritance Association TermAssociation MolecularFunctionAssociation BiologicalProcessAssociation CellularAnatomicalEntityAssociation CellTypeAssociation GrossAnatomyAssociation MoleculeAssociation Slots Name Cardinality and Range Description Inheritance term 0..1 TermObject The ontology term that describes the nature of the association direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TermAssociation native gocam:TermAssociation LinkML Source Direct name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam domain_of: - EvidenceItem - TermAssociation range: TermObject Induced name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: TermAssociation domain_of: - EvidenceItem - TermAssociation range: TermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: TermAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: TermAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: TermAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Class: TermAssociation"},{"location":"TermAssociation/#class-termassociation","text":"An association between an activity and a term, potentially with extensions NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermAssociation classDiagram class TermAssociation click TermAssociation href \"../TermAssociation\" Association <|-- TermAssociation click Association href \"../Association\" TermAssociation <|-- MolecularFunctionAssociation click MolecularFunctionAssociation href \"../MolecularFunctionAssociation\" TermAssociation <|-- BiologicalProcessAssociation click BiologicalProcessAssociation href \"../BiologicalProcessAssociation\" TermAssociation <|-- CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href \"../CellularAnatomicalEntityAssociation\" TermAssociation <|-- CellTypeAssociation click CellTypeAssociation href \"../CellTypeAssociation\" TermAssociation <|-- GrossAnatomyAssociation click GrossAnatomyAssociation href \"../GrossAnatomyAssociation\" TermAssociation <|-- MoleculeAssociation click MoleculeAssociation href \"../MoleculeAssociation\" TermAssociation : evidence TermAssociation --> \"*\" EvidenceItem : evidence click EvidenceItem href \"../EvidenceItem\" TermAssociation : provenances TermAssociation --> \"*\" ProvenanceInfo : provenances click ProvenanceInfo href \"../ProvenanceInfo\" TermAssociation : term TermAssociation --> \"0..1\" TermObject : term click TermObject href \"../TermObject\" TermAssociation : type","title":"Class: TermAssociation"},{"location":"TermAssociation/#inheritance","text":"Association TermAssociation MolecularFunctionAssociation BiologicalProcessAssociation CellularAnatomicalEntityAssociation CellTypeAssociation GrossAnatomyAssociation MoleculeAssociation","title":"Inheritance"},{"location":"TermAssociation/#slots","text":"Name Cardinality and Range Description Inheritance term 0..1 TermObject The ontology term that describes the nature of the association direct type 0..1 String Association evidence * EvidenceItem Association provenances * ProvenanceInfo Association","title":"Slots"},{"location":"TermAssociation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TermAssociation/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TermAssociation/#mappings","text":"Mapping Type Mapped Value self gocam:TermAssociation native gocam:TermAssociation","title":"Mappings"},{"location":"TermAssociation/#linkml-source","text":"","title":"LinkML Source"},{"location":"TermAssociation/#direct","text":"name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam domain_of: - EvidenceItem - TermAssociation range: TermObject","title":"Direct"},{"location":"TermAssociation/#induced","text":"name: TermAssociation description: An association between an activity and a term, potentially with extensions from_schema: https://w3id.org/gocam is_a: Association abstract: true attributes: term: name: term description: The ontology term that describes the nature of the association from_schema: https://w3id.org/gocam alias: term owner: TermAssociation domain_of: - EvidenceItem - TermAssociation range: TermObject type: name: type from_schema: https://w3id.org/gocam rank: 1000 designates_type: true alias: type owner: TermAssociation domain_of: - Association - Object range: string evidence: name: evidence from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: evidence owner: TermAssociation domain_of: - Association range: EvidenceItem inlined: true provenances: name: provenances from_schema: https://w3id.org/gocam multivalued: true alias: provenances owner: TermAssociation domain_of: - Model - Activity - EvidenceItem - Association range: ProvenanceInfo inlined: true inlined_as_list: true","title":"Induced"},{"location":"TermObject/","text":"Class: TermObject An abstract class for all ontology term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermObject classDiagram class TermObject click TermObject href \"../TermObject\" Object <|-- TermObject click Object href \"../Object\" TermObject <|-- EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject : id TermObject : label TermObject : obsolete TermObject : type Inheritance Object TermObject EvidenceTermObject MolecularFunctionTermObject BiologicalProcessTermObject CellularAnatomicalEntityTermObject MoleculeTermObject CellTypeTermObject GrossAnatomicalStructureTermObject PhaseTermObject InformationBiomacromoleculeTermObject TaxonTermObject PredicateTermObject Slots Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object Usages used by used in type used TermAssociation term range TermObject Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam Mappings Mapping Type Mapped Value self gocam:TermObject native gocam:TermObject LinkML Source Direct name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true Induced name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TermObject domain_of: - Object range: boolean","title":"Class: TermObject"},{"location":"TermObject/#class-termobject","text":"An abstract class for all ontology term objects NOTE : this is an abstract class and should not be instantiated directly URI: gocam:TermObject classDiagram class TermObject click TermObject href \"../TermObject\" Object <|-- TermObject click Object href \"../Object\" TermObject <|-- EvidenceTermObject click EvidenceTermObject href \"../EvidenceTermObject\" TermObject <|-- MolecularFunctionTermObject click MolecularFunctionTermObject href \"../MolecularFunctionTermObject\" TermObject <|-- BiologicalProcessTermObject click BiologicalProcessTermObject href \"../BiologicalProcessTermObject\" TermObject <|-- CellularAnatomicalEntityTermObject click CellularAnatomicalEntityTermObject href \"../CellularAnatomicalEntityTermObject\" TermObject <|-- MoleculeTermObject click MoleculeTermObject href \"../MoleculeTermObject\" TermObject <|-- CellTypeTermObject click CellTypeTermObject href \"../CellTypeTermObject\" TermObject <|-- GrossAnatomicalStructureTermObject click GrossAnatomicalStructureTermObject href \"../GrossAnatomicalStructureTermObject\" TermObject <|-- PhaseTermObject click PhaseTermObject href \"../PhaseTermObject\" TermObject <|-- InformationBiomacromoleculeTermObject click InformationBiomacromoleculeTermObject href \"../InformationBiomacromoleculeTermObject\" TermObject <|-- TaxonTermObject click TaxonTermObject href \"../TaxonTermObject\" TermObject <|-- PredicateTermObject click PredicateTermObject href \"../PredicateTermObject\" TermObject : id TermObject : label TermObject : obsolete TermObject : type","title":"Class: TermObject"},{"location":"TermObject/#inheritance","text":"Object TermObject EvidenceTermObject MolecularFunctionTermObject BiologicalProcessTermObject CellularAnatomicalEntityTermObject MoleculeTermObject CellTypeTermObject GrossAnatomicalStructureTermObject PhaseTermObject InformationBiomacromoleculeTermObject TaxonTermObject PredicateTermObject","title":"Inheritance"},{"location":"TermObject/#slots","text":"Name Cardinality and Range Description Inheritance id 1 Uriorcurie Object label 0..1 String Object type 0..1 Uriorcurie Object obsolete 0..1 Boolean Object","title":"Slots"},{"location":"TermObject/#usages","text":"used by used in type used TermAssociation term range TermObject","title":"Usages"},{"location":"TermObject/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TermObject/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"TermObject/#mappings","text":"Mapping Type Mapped Value self gocam:TermObject native gocam:TermObject","title":"Mappings"},{"location":"TermObject/#linkml-source","text":"","title":"LinkML Source"},{"location":"TermObject/#direct","text":"name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true","title":"Direct"},{"location":"TermObject/#induced","text":"name: TermObject description: An abstract class for all ontology term objects from_schema: https://w3id.org/gocam is_a: Object abstract: true attributes: id: name: id from_schema: https://w3id.org/gocam identifier: true alias: id owner: TermObject domain_of: - Model - Activity - Object range: uriorcurie required: true label: name: label from_schema: https://w3id.org/gocam rank: 1000 slot_uri: rdfs:label alias: label owner: TermObject domain_of: - Object range: string type: name: type from_schema: https://w3id.org/gocam designates_type: true alias: type owner: TermObject domain_of: - Association - Object range: uriorcurie obsolete: name: obsolete from_schema: https://w3id.org/gocam rank: 1000 alias: obsolete owner: TermObject domain_of: - Object range: boolean","title":"Induced"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Uri/","text":"Type: Uri a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str Comments in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str","title":"Type: Uri"},{"location":"Uri/#comments","text":"in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node","title":"Comments"},{"location":"Uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uri/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"Uriorcurie/","text":"Type: Uriorcurie a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uriorcurie/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"about/","text":"gocam GO CAM Data Model (Python)","title":"About"},{"location":"about/#gocam","text":"GO CAM Data Model (Python)","title":"gocam"},{"location":"abstract_text/","text":"Slot: abstract_text URI: gocam:abstract_text Applicable Classes Name Description Modifies Slot PublicationObject An object that represents a publication or other kind of reference no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string","title":"Slot: abstract_text"},{"location":"abstract_text/#slot-abstract_text","text":"URI: gocam:abstract_text","title":"Slot: abstract_text"},{"location":"abstract_text/#applicable-classes","text":"Name Description Modifies Slot PublicationObject An object that represents a publication or other kind of reference no","title":"Applicable Classes"},{"location":"abstract_text/#properties","text":"Range: String","title":"Properties"},{"location":"abstract_text/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"abstract_text/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"abstract_text/#linkml-source","text":"name: abstract_text from_schema: https://w3id.org/gocam rank: 1000 alias: abstract_text owner: PublicationObject domain_of: - PublicationObject range: string","title":"LinkML Source"},{"location":"activities/","text":"Slot: activities All of the activities that are part of the model URI: gocam:activities Applicable Classes Name Description Modifies Slot Model A model of a biological program consisting of a set of causally connected act... no Properties Range: Activity Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/gocam LinkML Source name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - Model range: Activity inlined: true inlined_as_list: true","title":"Slot: activities"},{"location":"activities/#slot-activities","text":"All of the activities that are part of the model URI: gocam:activities","title":"Slot: activities"},{"location":"activities/#applicable-classes","text":"Name Description Modifies Slot Model A model of a biological program consisting of a set of causally connected act... no","title":"Applicable Classes"},{"location":"activities/#properties","text":"Range: Activity Multivalued: True","title":"Properties"},{"location":"activities/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"activities/#schema-source","text":"from schema: https://w3id.org/gocam","title":"Schema Source"},{"location":"activities/#linkml-source","text":"name: activities description: All of the activities that are part of the model from_schema: https://w3id.org/gocam rank: 1000 multivalued: true alias: activities owner: Model domain_of: - 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Applicable Classes

-MoleculeAssociation -An association between an activity and a molecule term -yes +TermAssociation +An association between an activity and a term, potentially with extensions +no -EvidenceItem -An individual piece of evidence that is associated with an assertion in a mod... -no +BiologicalProcessAssociation +An association between an activity and a biological process term +yes GrossAnatomyAssociation @@ -333,8 +333,13 @@

Applicable Classes

yes -TermAssociation -An association between an activity and a term, potentially with extensions +MolecularFunctionAssociation +An association between an activity and a molecular function term +yes + + +EvidenceItem +An individual piece of evidence that is associated with an assertion in a mod... no @@ -343,8 +348,8 @@

Applicable Classes

yes -MolecularFunctionAssociation -An association between an activity and a molecular function term +MoleculeAssociation +An association between an activity and a molecule term yes @@ -352,11 +357,6 @@

Applicable Classes

An association between an activity and a cell type term yes - -BiologicalProcessAssociation -An association between an activity and a biological process term -yes -

Properties

diff --git a/type/index.html b/type/index.html index 2e20214..34ee013 100644 --- a/type/index.html +++ b/type/index.html @@ -318,88 +318,93 @@

Applicable Classes

-CellTypeAssociation -An association between an activity and a cell type term +GeneProductTermObject +A term object that represents a gene product term from GO or UniProtKB no -EvidenceTermObject -A term object that represents an evidence term from ECO +GrossAnatomyAssociation +An association between an activity and a gross anatomical structure term no -TaxonTermObject +PredicateTermObject A term object that represents a taxon term from NCBITaxon no -BiologicalProcessTermObject -A term object that represents a biological process term from GO +TermObject +An abstract class for all ontology term objects no -MoleculeAssociation -An association between an activity and a molecule term +MoleculeTermObject +A term object that represents a molecule term from CHEBI or UniProtKB no -CellTypeTermObject -A term object that represents a cell type term from CL +CellularAnatomicalEntityTermObject +A term object that represents a cellular anatomical entity term from GO no -TermAssociation -An association between an activity and a term, potentially with extensions +BiologicalProcessTermObject +A term object that represents a biological process term from GO no -Association -An abstract grouping for different kinds of evidence-associated provenance +BiologicalProcessAssociation +An association between an activity and a biological process term no -BiologicalProcessAssociation -An association between an activity and a biological process term +TaxonTermObject +A term object that represents a taxon term from NCBITaxon no -CausalAssociation -A causal association between two activities +MolecularFunctionTermObject +A term object that represents a molecular function term from GO no -TermObject -An abstract class for all ontology term objects +PublicationObject +An object that represents a publication or other kind of reference no -PredicateTermObject -A term object that represents a taxon term from NCBITaxon +Association +An abstract grouping for different kinds of evidence-associated provenance no -MolecularFunctionAssociation -An association between an activity and a molecular function term +CellTypeAssociation +An association between an activity and a cell type term no -GeneProductTermObject -A term object that represents a gene product term from GO or UniProtKB +CellTypeTermObject +A term object that represents a cell type term from CL no -MolecularFunctionTermObject -A term object that represents a molecular function term from GO +GrossAnatomicalStructureTermObject +A term object that represents a gross anatomical structure term from UBERON no -MoleculeTermObject -A term object that represents a molecule term from CHEBI or UniProtKB +MolecularFunctionAssociation +An association between an activity and a molecular function term no -PublicationObject -An object that represents a publication or other kind of reference +CellularAnatomicalEntityAssociation +An association between an activity and a cellular anatomical entity term +no + + +EvidenceTermObject +A term object that represents an evidence term from ECO no @@ -408,28 +413,28 @@

Applicable Classes

no -InformationBiomacromoleculeTermObject -An abstract class for all information biomacromolecule term objects +MoleculeAssociation +An association between an activity and a molecule term no -CellularAnatomicalEntityTermObject -A term object that represents a cellular anatomical entity term from GO +TermAssociation +An association between an activity and a term, potentially with extensions no -GrossAnatomyAssociation -An association between an activity and a gross anatomical structure term +PhaseTermObject +A term object that represents a phase term from GO or UBERON no -CellularAnatomicalEntityAssociation -An association between an activity and a cellular anatomical entity term +CausalAssociation +A causal association between two activities no -GrossAnatomicalStructureTermObject -A term object that represents a gross anatomical structure term from UBERON +InformationBiomacromoleculeTermObject +An abstract class for all information biomacromolecule term objects no @@ -437,11 +442,6 @@

Applicable Classes

A term object that represents a protein complex term from GO no - -PhaseTermObject -A term object that represents a phase term from GO or UBERON -no -

Properties