diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf index 14bc5716..177e81ae 100644 --- a/docs/gorules_test_errors.gaf +++ b/docs/gorules_test_errors.gaf @@ -1,267 +1,274 @@ -!gaf-version: 2.2 -!generated-by: GOC -!date-generated: 2023-10-13 -! Dummy GAF file containing deliberate errors to test that GO rules are correctly implemented. - -! FAILS GORULE:0000001 - empty col1 and col2 - At2g28815 is_active_in GO:0005762 PMID:21873635 IBA PANTHER:PTN000259457|UniProtKB:Q9NX20|SGD:S000000134 C 60S ribosomal protein L16-like, mitochondrial UniProtKB:Q84WZ8|PTN000259517 protein taxon:3702 2017-02-28 GO_Central -! FAILS GORULE:0000001 - No gene symbol (Column 3) -PomBase SPAC977.10 is_active_in GO:1990578 PMID:19171118 IDA C plasma membrane sodium ion/proton antiporter Nhe1/Sod2 sod2 protein taxon:4896 20151201 PomBase -! FAILS GORULE:0000001 - Blank lines - -! FAILS GORULE:0000001 - TEST 1 - Wrong number of columns -PomBase SPAC977.10 -! FAILS GORULE:0000001 - TEST 2 - (see also GORULE:0000058) bad extension syntax +!gaf-version: 2.2 +!generated-by: GOC +!date-generated: 2023-11-09 +! Dummy GAF file containing deliberate errors to test that GO rules are correctly implemented. +! FAILS GORULE:0000001 - empty col1 and col2 + ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-1 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase +! FAILS GORULE:0000001 - No gene symbol (Column 3) +PomBase SPAC977.10 is_active_in GO:1990578 PMID:19171118 IDA C plasma membrane sodium ion/proton antiporter Nhe1/Sod2 sod2 protein taxon:4896 20151201 PomBase +! FAILS GORULE:0000001 - Blank lines + +! FAILS GORULE:0000001 - TEST 1 - Wrong number of columns +PomBase SPAC977.10 +! FAILS GORULE:0000001 - TEST 2 - (see also GORULE:0000058) bad extension syntax PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-1 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of -! FAILS GORULE:0000001 - (see also GORULE:0000058) bad extension filler: not a CURIE +! FAILS GORULE:0000001 - (see also GORULE:0000058) bad extension filler: not a CURIE PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-2 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(x) -! FAILS GORULE:0000001 - TEST 3 - (see also GORULE:0000058) bad extension filler: space in ID +! FAILS GORULE:0000001 - TEST 3 - (see also GORULE:0000058) bad extension filler: space in ID PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-3 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:9 X:8) -! FAILS GORULE:0000001 - TEST 4 - (see also GORULE:0000058) bad extension filler: space in ID, with an additional valid expression -PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-4 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:9 X:8),part_of(X:1) -! FAILS GORULE:0000001 - TEST 5 - Bad evidence code +"! FAILS GORULE:0000001 - TEST 4 - (see also GORULE:0000058) bad extension filler: space in ID, with an additional valid expression" +PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-4 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase "part_of(X:9 X:8),part_of(X:1)" +! FAILS GORULE:0000001 - TEST 5 - Bad evidence code PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 MADEUP SGD:S000001583 C GORULE:0000001-5 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:1) -! FAILS GORULE:0000001 - TEST 6 - Bad date, but fixable -PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-6 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 2015-03-05 PomBase part_of(X:1) -! FAILS GORULE:0000001 - TEST 7 - Bad date, unparsable +"! FAILS GORULE:0000001 - TEST 6 - Bad date, but fixable" +PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-6 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 3/5/15 PomBase part_of(X:1) +"! FAILS GORULE:0000001 - TEST 7 - Bad date, unparsable" PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-7 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 TODAY PomBase part_of(X:1) -! FAILS GORULE:0000001 - TEST 8 - invalid taxon 0 -ZFIN ZDB-GENE-070117-1552 obj_symbol acts_upstream_of_or_within GO:0045601 PMID:17531218 IMP ZFIN:ZDB-GENO-080318-17 P GORULE:0000001-8 gene_product taxon:0 20080326 ZFIN -! FAILS GORULE:0000001 - TEST 9 - invalid taxon non-numeric -ZFIN ZDB-GENE-070117-1552 obj_symbol acts_upstream_of_or_within GO:0045601 PMID:17531218 IMP ZFIN:ZDB-GENO-080318-17 P GORULE:0000001-9 gene_product taxon:12v!89 20080326 ZFIN -! FAILS GORULE:0000001 - TEST 10 -fails because no data in column 4. -FB FBgn0011273 Acam GO:0070865 FB:FBrf0193169|PMID:16790438 IDA C GORULE:0000001-10 Androcam ACaM|And|CG17769|CalB|Calmodulin-related 97A|Camr97A|androcalmodulin|androcam protein taxon:7227 20180501 FlyBase -! FAILS GORULE:0000001 - TEST 11 - bad GO ID syntax -PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-11 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000001 - TEST 12 - bad GO ID syntax; no colon -PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-12 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000001 - TEST 13 - bad GO ID syntax; bad namespace -PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-13 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000002 - TEST 1 - has a 'NOT' annotations to 'protein binding ; GO:0005515 -UniProtKB O76187 darA NOT|enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-1 Darlin darA protein taxon:44689 20100205 UniProt -! FAILS GORULE:0000002 - TEST 2 - has a 'NOT' annotations to 'binding ; GO:0005515 -UniProtKB O76187 darA NOT|enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-2 Darlin darA protein taxon:44689 20100205 UniProt -! PASSES GORULE:0000003 - TEST 3 - has a 'NOT' annotations to GO:0005509, a child of 'binding ; GO:0005515 -UniProtKB O76187 darA NOT|enables GO:0005509 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-3-PASS Darlin darA protein taxon:44689 20100205 UniProt -! TBC FAILS GORULE:0000005 - TEST 1 - incorrect evidence codes for 'protein binding ; GO:0005515' - ISS not allowed -UniProtKB O76187 darA enables GO:0005515 PMID:9802899 ISS UniProtKB:P34149 F GORULE:0000005-1 Darlin darA protein taxon:44689 20100205 UniProt -! TBC FAILS GORULE:0000005 - TEST 2 - incorrect evidence codes for 'protein binding ; GO:0005515' - IS0 not allowed -UniProtKB O76187 darA enables GO:0005515 PMID:9802899 ISO UniProtKB:P34149 F GORULE:0000005-2 Darlin darA protein taxon:44689 20100205 UniProt -! TBC FAILS GORULE:0000005 - TEST 3 - incorrect evidence codes for 'protein binding ; GO:0005515' - IBA not allowed -UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IBA UniProtKB:P34149 F GORULE:0000005-3 Darlin darA protein taxon:44689 20100205 -! FAILS GORULE:0000006 - TEST 1 - fails because uses IEP with a molecular function term. -GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006-1 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB -! FAILS GORULE:0000006 - TEST 2 - fails because uses HEP with a molecular function term. -GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 HEP F GORULE:0000006-2 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB -! FAILS GORULE:0000006 - TEST 3 - fails because uses IEP with a cellular component term. -GeneDB PF3D7_0507500 SUB1 enables GO:0005634 PMID:12764150 IEP C GORULE:0000006-3 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB -! SHOULD PASS GORULE:0000006 - TEST 4 - passes because uses assigned_by is GOC, even if there is an IEP with a molecular function term. -GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006-4 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GOC -! SHOULD PASS GORULE:0000006 - TEST 5 - should pass because obsolete BP term should be isgnored; GO:1901011 obsolete (S)-reticuline catabolic process -GeneDB PF3D7_0507500 SUB1 enables GO:1901011 PMID:12764150 IEP C GORULE:0000006-5 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB -! SHOULD PASS GORULE:0000006 - TEST 6 - should pass because alt_ids should be ignored, and GO:0006758 is an alt_id to GO:0006754 ATP biosynthetic process -GeneDB PF3D7_0507500 SUB1 enables GO:0006758 PMID:12764150 IEP C GORULE:0000006-6 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB -! FAILS GORULE:0000007 IPI used with GO:0003824 catalytic activity or descendents (GO:0004674 protein serine/threonine kinase activity) -UniProtKB A0A078CGE6 M3KE1 enables GO:0004674 PMID:11489177 IPI F GORULE:0000007-1 protein taxon:3708 20150115 UniProt -! FAILS GORULE:0000008 - TEST 1 - GO:0005622 is in the subset gocheck_do_not_annotate -UniProtKB Q9DGE2 mapk14a is_active_in GO:0005622 PMID:10995439 IDA C GORULE:0000008-1 Mitogen-activated protein kinase 14A mapk14a|mapk14 protein taxon:7955 20180129 UniProt -! FAILS GORULE:0000008 - TEST 2 - GO:0007049 is in the subset gocheck_do_not_manually_annotate -UniProtKB Q9WVH3 Foxo4 involved_in GO:0007049 PMID:12048180 IDA P GORULE:0000008-2 Forkhead box protein O4 Foxo4|Afx|Afx1 protein taxon:10090 20110425 MGI -! FAILS GORULE:0000008 - TEST 3 - also fails GORULE:0000051 - GO:0005488 is in the subset gocheck_do_not_manually_annotate -UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000008-3 Darlin darA protein taxon:44689 20100205 UniProt -! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575 -UniProtKB Q4KA26 PFL_3807 is_active_in GO:0016020 GO_REF:0000015 ND C GORULE:0000011-1 Putative membrane protein PFL_3807 protein taxon:220664 20090717 JCVI -! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575. -UniProtKB Q4KA26 PFL_3807 is_active_in GO:0005575 GO_REF:0000015 IDA C GORULE:0000011-2 Putative membrane protein PFL_3807 protein taxon:220664 20090717 JCVI -! SHOULD PASS GORULE:0000011 - TEST 3 -UniProtKB Q6UW15 REG3G involved_in GO:0050689 PMID:16931762 IDA P GORULE:0000011-3 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 UniProt -! FAILS GORULE:0000013 - fails because GO:0075342 should not be annotated for human gene products - cannot be tested in ontobio parser (not a line-by-line check) -UniProtKB P67870 CSNK2B involved_in GO:0075342 PMID:20719947 IDA P GORULE:0000013-1 Casein kinase II subunit beta CSNK2B|CK2N|G5A protein taxon:9606 20230307 UniProt -! FAILS GORULE:0000015 - TEST 1 - GO:0005886 plasma membrane is not a child of "GO:0018995 host cellular component" -UniProtKB O56786 hol187 is_active_in GO:0005886 PMID:10419939 IDA C GORULE:0000015-1 Holin protein Hol187 hol187 protein taxon:55511|taxon:9696 20170423 CACAO -! FAILS GORULE:0000015 - TEST 2 - "neutrophil chemotaxis" is not a child of "GO:0044419 interspecies interaction between organisms" -UniProtKB A0A0K2S4Q6 CD300H involved_in GO:0030593 PMID:26221034 IDA P GORULE:0000015-2 Protein CD300H CD300H protein taxon:9606|taxon:55511 20160428 UniProt -! FAILS GORULE:0000015 - TEST 3 - same taxon in Column 13 for GO:0044158 host cell wall -UniProtKB O56786 hol187 is_active_in GO:0018995 PMID:10419939 IDA C GORULE:0000015-3 Holin protein Hol187 hol187 protein taxon:9606|taxon:9606 20170423 CACAO -! SHOULD PASS GORULE:0000015 - TEST 4 - GO:0010363 regulation of plant-type hypersensitive response is_ GO:0043903 regulation of biological process involved in symbiotic interaction -UniProtKB Q6UW15 REG3G involved_in O:0010363 PMID:16931762 IDA P GORULE:0000015-4 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 UniProt -! FAILS GORULE:0000016 - TEST 1 - column 8 (with/from) is null -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC P GORULE:0000016-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! FAILS GORULE:0000016 - TEST 2 - column 8 (with/from) is has a non-GOID -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC UBERON:0002048 P GORULE:0000016-2 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! FAILS GORULE:0000016 - TEST 3 - column 8 (with/from) is the same GOID as column 5 -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:0006921 P GORULE:0000016-3 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! SHOULD PASS GORULE:0000016 - TEST 5 - column 8 (with/from) is has a valid GO ID -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:009718 P GORULE:0000016-5 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! FAILS GORULE:0000017 - TEST 1 - IDA annotations must not have a with/from entry (column 8) -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IDA GO:0004198|GO:0008092 P GORULE:0000017-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! FAILS GORULE:0000018 - TEST 1 - column 8 (with/from) is null for IPI annotation to 'protein binding ; GO:0005515' -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-1 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 UniProt -! FAILS GORULE:0000018 - TEST 2 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-2 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 UniProt -! FAILS GORULE:0000018 - TEST 3 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' -UniProtKB O76187 darA involved_in GO:0005488 PMID:9802899 IPI F GORULE:0000018-3 protein taxon:44689 20230513 IntAct -! FAILS GORULE:0000020 - TEST 1 - obsolete term with no replacement -UniProtKB P04995 sbcB involved_in GO:0090503 GO_REF:0000108 IEA GO:0000175 P GORULE:0000020-1 Exodeoxyribonuclease I sbcB|cpeA|xonA|JW1993|b2011 protein taxon:83333 20230509 GOC -! FAILS GORULE:0000020 - TEST 2 - obsolete term with a replacement term -TriTrypDB Tb11.02.5420b Tb11.02.5420b located_in GO:0016021 GO_REF:0000002 ISO GeneDB:Tb11.02.5420 C GORULE:0000020-2 NADPH-cytochrome p450 reductase, putative mRNA taxon:185431 20130726 GeneDB -! FAILS GORULE:0000020 - TEST 3 - obsolete term in 'with' (column 8) with no replacement -MGI:1100518 Smad7 bla involved_in GO:0017015 MGI:MGI:3836072|PMID:18952608 IC GO:0060389 P GORULE:0000020-3 SMAD protein_coding_gene taxon:10090 20090211 BHF-UCL -! FAILS GORULE:0000020 - TEST 4 - obsolete term in 'extension' (column 16) with no replacement -UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000020-4 Darlin darA protein taxon:44689 20100205 UniProt involved_in(GO:0090503) -! FAILS GORULE:0000020 - TEST 5 - obsolete term in 'extension' (column 16) with a replacement -UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000020-5 Darlin darA protein taxon:44689 20100205 UniProt involved_in(GO:0014067) -! FAILS GORULE:0000027 - TEST 1 - bad GO ID syntax -PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-1 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000027 - TEST 2 - bad GO ID syntax; no colon -PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-2 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000027 - TEST 3 - bad GO ID syntax; bad namespace -PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-3 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -! FAILS GORULE:0000027 - TEST 4 - Prefix not in /db-xrefs.yaml -UniPotKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-4 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 BHF-UCL -! FAILS GORULE:0000027 - TEST 5 - Assigned_by not in /groups.yaml -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-5 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000027 - TEST 6 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:PMID:14561399 IDA P GORULE:0000027-6 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000027 - TEST 7 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:unpublished IDA P GORULE:0000027-7 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000027 - TEST 8 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID: IDA P GORULE:0000027-8 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000027 - TEST 9 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:0. IDA P GORULE:0000027-9 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE:0000028-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA F GORULE:0000028-2 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB -! FAILS GORULE:0000028 - TEST 3 - Bad GO aspect, P instead of F -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA P GORULE:0000028-3 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 UniProt -! FAILS GORULE:0000028 - TEST 4 - GO aspect missing -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA GORULE:0000028-4 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 UniProt -! FAILS GORULE:0000029 - TEST 1 - IEA older than 1 year -UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000029-1 protein taxon:83333 20220807 UniProt -! FAILS GORULE:0000029 - TEST 2 - IEA older than 3 years -UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000029-2 protein taxon:83333 20200507 UniProt -! FAILS GORULE:0000030 - TEST 1 - Deprecated GO_REF -UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000045 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000030-1 protein taxon:83333 20230607 UniProt -! SHOULD PASS GORULE:0000030 - TEST 2 - Valid GO_REF -UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000033 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000030-2 protein taxon:83333 20230607 UniProt -! FAILS GORULE:0000037 - TEST 1 - IBA with Assigned_by other than GO_Central -UniProtKB A0A024BTL2 PHKG1 is_active_in GO:0005634 PMID:21873635 IBA FB:FBgn0019686|FB:FBgn0028360|FB:FBgn0032677|PANTHER:PTN005196447|PomBase:SPAC14C4.03|PomBase:SPCC1322.08|PomBase:SPCC18B5.11c|RGD:621543|SGD:S000006074|UniProtKB:O96017|UniProtKB:Q5AVW7 C GORULE:0000037-1 protein taxon:9823 20221009 FlyBase -! FAILS GORULE:0000037 - TEST 2 - IBA with reference other than PMID:21873635 -UniProtKB A0A024BTL2 PHKG1 is_active_in GO:0005634 PMID:26221034 IBA FB:FBgn0019686|FB:FBgn0028360|FB:FBgn0032677|PANTHER:PTN005196447|PomBase:SPAC14C4.03|PomBase:SPCC1322.08|PomBase:SPCC18B5.11c|RGD:621543|SGD:S000006074|UniProtKB:O96017|UniProtKB:Q5AVW7 C GORULE:0000037-2 protein taxon:9823 20221009 GO_Central -! FAILS GORULE:0000039 - TEST 1 - Protein complex annotated to GO:0032991 protein-containing complex -ComplexPortal CPX-102 dapk-calm_human part_of GO:0032991 PMID:10629061 IMP C GORULE:0000039-1 complex taxon:9606 20200218 ComplexPortal -! FAILS GORULE:0000039 TEST 2 - Protein complex annotated to an is_a descendant of GO:0032991 protein-containing complex -ComplexPortal CPX-102 dapk-calm_human part_of GO:0043020 PMID:10629061 IMP C GORULE:0000039-2 complex taxon:9606 20200218 ComplexPortal -! FAILS GORULE:0000042 - TEST 1 - IKR evidence, no negation (NOT) in column 4 -UniProtKB A0A0B4JCV5 CG9898 enables GO:0004252 PMID:30367934 IKR F GORULE:0000042-1 protein taxon:7227 20190311 FlyBase -! FAILS GORULE:0000046 - TEST 1 - self-binding’ term, no data in Column 8 -UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA F GORULE:0000046-1 protein taxon:9606 20170627 UniProt -! FAILS GORULE:0000046 - TEST 2 - self-binding’ term, annotated to a protein other than 'self' -UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA UniProtKB:P35555 F GORULE:0000046-2 protein taxon:9606 20170627 UniProt -! FAILS GORULE:0000050 - TEST 1 - self-referential ISS annotations -UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISS UniProtKB:F1N2N9 C GORULE:0000050-1 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 UniProt -! FAILS GORULE:0000050 - TEST 2 - self-referential ISO annotations -UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISO UniProtKB:F1N2N9 C GORULE:0000050-2 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 UniProt -! FAILS GORULE:0000050 - TEST 3 - self-referential ISA annotations -UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISA UniProtKB:F1N2N9 C GORULE:0000050-3 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 UniProt -! SHOULD PASS GORULE:0000051 - Pass RULE 51 - Annotation extension for certain GO terms - protein binding; GO:0005515 -UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-PASS1 Darlin darA protein taxon:44689 20100205 UniProt has_input(GO:0003674)|occurs_in(CL:123456) -! FAILS GORULE:0000051 - TEST 1 - also fails GORULE:0000008 - Annotation extension is required for certain terms - binding GO:0005488 -UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-1 Darlin darA protein taxon:44689 20100205 UniProt -! FAILS GORULE:0000055 - TEST 1 - Two references in the same ID space - PMID -PlasmoDB PF3D7_0200400 PF3D7_0200400 is_active_in GO:0020036 PMID:12477793|PMID:15961998 IDA C GORULE:0000055-1 stevor mRNA taxon:4896 20131007 GeneDB -! FAILS GORULE:0000055 - TEST 2 - Two references in the same ID space - GO_REF -PlasmoDB PF3D7_0200400 PF3D7_0200400 is_active_in GO:0020036 GO_REF:0000044|GO_REF:0000001 IDA C GORULE:0000055-2 stevor mRNA taxon:4896 20131007 GeneDB -! FAILS GORULE:0000059 - TEST 1 - GP2term relation missing -SGN 235 cpk1 GO:0005886 PMID:12011347 IDA C GORULE:0000059-1 calcium-dependent protein kinase LeCPK1|Solyc03g031670 gene taxon:4081 20080616 SGN -! FAILS GORULE:0000061 - TEST 1 SHOULD NOT FAIL (wrong on snapshot??) the part_of GP2term relation is not allowed for GO:0070865 -FB FBgn0011273 Acam part_of GO:0070865 FB:FBrf0193169|PMID:16790438 IDA C GORULE:0000061-1 Androcam ACaM|And|CG17769|CalB|Calmodulin-related 97A|Camr97A|androcalmodulin|androcam protein taxon:7227 20180501 FlyBase -! FAILS GORULE:0000061 - TEST 3 - SHOULD NOT FAIL the 'part_of' GP2term relation is allowed for GO:0070864 (CC complex) -FB FBgn0011273 shi part_of GO:0070864 PMID:12432073 IDA C GORULE:0000061-3 Dynamin Protein shibire|dDyn protein taxon:7227 20180501 FlyBase -! FAILS GORULE:0000061 - TEST 4 - the 'part_of' GP2term relation is not allowed for GO:0140827 (MF) -UniProtKB A1B2F4 aztD part_of GO:0140827 PMID:26468286 IDA F GORULE:0000061-4 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - TEST 5 - the 'enables' GP2term relation is not allowed for GO:0005856 (CC) -UniProtKB A1B2F4 aztD enables GO:0005856 PMID:26468286 IDA C GORULE:0000061-5 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - TEST 6 - also fails GORULE-0000011 - the 'located in' GP2term relation is not allowed for GO:0005575 (root CC) - Fails GORULE 11 -UniProtKB A1B2F4 aztD located_in GO:0005575 PMID:26468286 IDA F GORULE:0000061-6 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - TEST 7 - also fails GORULE-0000011 - the 'contributes_to' GP2term relation is not allowed for GO:0003674 (root MF) - Fails GORULE 11 -UniProtKB A1B2F4 aztD contributes_to GO:0003674 PMID:26468286 IDA F GORULE:0000061-7 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - TEST 8 - also fails GORULE-0000011 - the 'acts upstream of or within' GP2term relation is not allowed for GO:0008150 (root BP) - Fails GORULE 11 -UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0008150 PMID:26468286 IDA F GORULE:0000061-8 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 9- 'enables' is not allowed for a GO BP -UniProtKB A1B2F4 aztD enables GO:0043491 PMID:26468286 IDA P GORULE:0000061-9 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 10 - 'contributes_to' is not allowed for a GO BP -UniProtKB A1B2F4 aztD contributes_to GO:0043491 PMID:26468286 IDA P GORULE:0000061-10 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 11 'enables' is not allowed for a GO CC -UniProtKB A1B2F4 aztD enables GO:0005634 PMID:26468286 IDA C GORULE:0000061-11 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 12 - 'contributes_to' is not allowed for a GO CC -UniProtKB A1B2F4 aztD contributes_to GO:0005634 PMID:26468286 IDA C GORULE:0000061-12 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 13 - 'involved_in' is not allowed for a GO MF -UniProtKB A1B2F4 aztD involved_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-13 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 14- 'acts_upstream_of_or_within' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0004672 PMID:26468286 IDA F GORULE:0000061-14 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 15- 'acts_upstream_of_or_within,_positive_effect' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of_or_within,_positive_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-15 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 16 - 'acts_upstream_of_or_within,_negative_effect' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of_or_within,_negative_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-16 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 17 - 'acts_upstream_of' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of GO:0004672 PMID:26468286 IDA F GORULE:0000061-17 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 18 - acts_upstream_of,_positive_effect' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of,_positive_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-18 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 19- 'acts_upstream_of,_negative_effect' is not allowed for a GO MF -UniProtKB A1B2F4 aztD acts_upstream_of,_negative_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-19 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 20 - 'involved_in' is not allowed for a GO CC -UniProtKB A1B2F4 aztD involved_in GO:0005634 PMID:26468286 IDA C GORULE:0000061-20 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 21- 'acts_upstream_of_or_within' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0005634 PMID:26468286 IDA C GORULE:0000061-21 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 22 - 'acts_upstream_of_or_within,_positive_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of_or_within,_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-22 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 23 - 'acts_upstream_of_or_within,_negative_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of_or_within,_negative_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-23 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 24 - 'acts_upstream_of' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-24 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 25 - 'acts_upstream_of,_positive_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of,_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-25 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 25-2 - 'acts_upstream_of_positive_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-25-2 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 26 - 'acts_upstream_of,_negative_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of,_negative_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-26 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 26-2 - 'acts_upstream_of_negative_effect' is not allowed for a GO CC -UniProtKB A1B2F4 aztD acts_upstream_of_negative_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-26-2 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 27 - 'is_active_in' is not allowed for a GO MF -UniProtKB A1B2F4 aztD is_active_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-27 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 28 - 'part_of' is not allowed for a GO MF -UniProtKB A1B2F4 aztD part_of GO:0004672 PMID:26468286 IDA F GORULE:0000061-28 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 29 - 'located_in' is not allowed for a GO MF -UniProtKB A1B2F4 aztD located_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-29 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 30 - 'colocalizes_with' is not allowed for a GO MF -UniProtKB A1B2F4 aztD colocalizes_with GO:0004672 PMID:26468286 IDA F GORULE:0000061-30 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 31 - 'is_active_in' is not allowed for a GO BP -UniProtKB A1B2F4 aztD is_active_in GO:0043491 PMID:26468286 IDA P GORULE:0000061-31 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 32 - 'part_of' is not allowed for a GO BP -UniProtKB A1B2F4 aztD part_of GO:0043491 PMID:26468286 IDA P GORULE:0000061-32 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 33 - 'located_in' is not allowed for a GO BP -UniProtKB A1B2F4 aztD located_in GO:0043491 PMID:26468286 IDA P GORULE:0000061-33 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 34 - 'colocalizes_with' is not allowed for a GO BP -UniProtKB A1B2F4 aztD colocalizes_with GO:0043491 PMID:26468286 IDA P GORULE:0000061-34 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 35 - 'is_active_in' is not allowed for a GO CC - complex -UniProtKB A1B2F4 aztD is_active_in GO:0000124 PMID:26468286 IDA C GORULE:0000061-35 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 36 - 'located_in' is not allowed for a GO CC - complex -UniProtKB A1B2F4 aztD located_in GO:0042101 PMID:26468286 IDA C GORULE:0000061-36 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 37 - 'colocalizes_with' is not allowed for a GO CC - complex -UniProtKB A1B2F4 aztD colocalizes_with GO:0042101 PMID:26468286 IDA C GORULE:0000061-37 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 38 - 'part_of' is not allowed for a GO CC - cellular anatomical entity -UniProtKB A1B2F4 aztD part_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-38 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 39 - 'part_of' is not allowed for GO CC - cellular anatomical entity -UniProtKB A1B2F4 aztD NOT|part_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-39 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 40 - Fail unknown GO id type -FB FBgn0011273 shi NOT|part_of GO:1234567 PMID:12432073 IDA C GORULE:0000061-40 Dynamin Protein shibire|dDyn protein taxon:7227 20180501 FlyBase -! FAILS GORULE:0000061 - test 41 - 'part_of' is not allowed for GO CC - cell plate descendent of cellular anatomical entity -UniProtKB A1B2F4 aztD part_of GO:0009504 PMID:26468286 IDA C GORULE:0000061-41 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 42 - 'part_of' is not allowed for GO CC cellular anatomical entity -UniProtKB A1B2F4 aztD part_of GO:0110165 PMID:26468286 IDA C GORULE:0000061-42 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 43 - 'part_of' is not allowed for GO CC virion component -UniProtKB A1B2F4 aztD part_of GO:0044423 PMID:26468286 IDA C GORULE:0000061-43 protein taxon:318586 20230427 UniProt -! FAILS GORULE:0000061 - test 44 - 'part_of' is not allowed for a GO CC icosahedral viral capsid, neck descendant of virion component -UniProtKB A1B2F4 aztD part_of GO:0098030 PMID:26468286 IDA C GORULE:0000061-44 protein taxon:318586 20230427 UniProt +! FAILS GORULE:0000001 - TEST 8 - invalid taxon 0 +ZFIN ZDB-GENE-070117-1552 obj_symbol acts_upstream_of_or_within GO:0045601 PMID:17531218 IMP ZFIN:ZDB-GENO-080318-17 P GORULE:0000001-8 gene_product taxon:0 20080326 PomBase +! FAILS GORULE:0000001 - TEST 9 - invalid taxon non-numeric +ZFIN ZDB-GENE-070117-1552 obj_symbol acts_upstream_of_or_within GO:0045601 PMID:17531218 IMP ZFIN:ZDB-GENO-080318-17 P GORULE:0000001-9 gene_product taxon:12v!89 20080326 PomBase +! FAILS GORULE:0000001 - TEST 10 -fails because no data in column 4. +FB FBgn0011273 Acam GO:0070865 FB:FBrf0193169|PMID:16790438 IDA C GORULE:0000001-10 Androcam ACaM|And|CG17769|CalB|Calmodulin-related 97A|Camr97A|androcalmodulin|androcam protein taxon:7227 20180501 PomBase +! FAILS GORULE:0000001 - TEST 11 - bad GO ID syntax +PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-11 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase +! FAILS GORULE:0000001 - TEST 12 - bad GO ID syntax; no colon +PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-12 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase +! FAILS GORULE:0000001 - TEST 13 - bad GO ID syntax; bad namespace +PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-13 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase +"! FAILS GORULE:0000001 - test 14 - 'acts_upstream_of,_positive_effect' is not a valid relation (should not contain a comma)" +UniProtKB A1B2F4 aztD "acts_upstream_of,_positive_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-14 protein taxon:318586 20230427 PomBase +! FAILS GORULE:0000001 - test 15 - 'acts_upstream_of_positive_effect' is not a valid relation (should not contain a comma) +UniProtKB A1B2F4 aztD acts_upstream_of_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000001-15 protein taxon:318586 20230427 PomBase +"! FAILS GORULE:0000001 - test 16 - 'acts_upstream_of_or_within,_positive_effect' is not a valid relation (should not contain a comma)" +UniProtKB A1B2F4 aztD "acts_upstream_of_or_within,_positive_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-16 protein taxon:318586 20230427 PomBase +"! FAILS GORULE:0000001 - test 17 - 'acts_upstream_of_or_within,_negative_effect' is not a valid relation (should not contain a comma)" +UniProtKB A1B2F4 aztD "acts_upstream_of_or_within,_negative_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-17 protein taxon:318586 20230427 PomBase +! FAILS GORULE:0000002 - TEST 1 - has a 'NOT' annotations to 'protein binding ; GO:0005515 +UniProtKB O76187 darA NOT|enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-1 Darlin darA protein taxon:44689 20100205 GO_Central +! FAILS GORULE:0000002 - TEST 2 - has a 'NOT' annotations to 'binding ; GO:0005515 +UniProtKB O76187 darA NOT|enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-2 Darlin darA protein taxon:44689 20100205 GO_Central +"! PASSES GORULE:0000003 - TEST 3 - has a 'NOT' annotations to GO:0005509, a child of 'binding ; GO:0005515" +UniProtKB O76187 darA NOT|enables GO:0005509 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-3-PASS Darlin darA protein taxon:44689 20100205 GO_Central +! TBC FAILS GORULE:0000005 - TEST 1 - incorrect evidence codes for 'protein binding ; GO:0005515' - ISS not allowed +UniProtKB O76187 darA enables GO:0005515 PMID:9802899 ISS UniProtKB:P34149 F GORULE:0000005-1 Darlin darA protein taxon:44689 20100205 GO_Central +! TBC FAILS GORULE:0000005 - TEST 2 - incorrect evidence codes for 'protein binding ; GO:0005515' - IS0 not allowed +UniProtKB O76187 darA enables GO:0005515 PMID:9802899 ISO UniProtKB:P34149 F GORULE:0000005-2 Darlin darA protein taxon:44689 20100205 GO_Central +! TBC FAILS GORULE:0000005 - TEST 3 - incorrect evidence codes for 'protein binding ; GO:0005515' - IBA not allowed +UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IBA UniProtKB:P34149 F GORULE:0000005-3 Darlin darA protein taxon:44689 20100205 GO_Central +! FAILS GORULE:0000006 - TEST 1 - fails because uses IEP with a molecular function term. +GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006-1 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central +! FAILS GORULE:0000006 - TEST 2 - fails because uses HEP with a molecular function term. +GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 HEP F GORULE:0000006-2 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central +! FAILS GORULE:0000006 - TEST 3 - fails because uses IEP with a cellular component term. +GeneDB PF3D7_0507500 SUB1 enables GO:0005634 PMID:12764150 IEP C GORULE:0000006-3 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central +"! SHOULD PASS GORULE:0000006 - TEST 4 - passes because uses assigned_by is GOC, even if there is an IEP with a molecular function term." +GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006-4 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GOC +! SHOULD PASS GORULE:0000006 - TEST 5 - should pass because obsolete BP term should be isgnored; GO:1901011 obsolete (S)-reticuline catabolic process +GeneDB PF3D7_0507500 SUB1 enables GO:1901011 PMID:12764150 IEP C GORULE:0000006-5 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central +"! SHOULD PASS GORULE:0000006 - TEST 6 - should pass because alt_ids should be ignored, and GO:0006758 is an alt_id to GO:0006754 ATP biosynthetic process" +GeneDB PF3D7_0507500 SUB1 enables GO:0006758 PMID:12764150 IEP C GORULE:0000006-6 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central +! FAILS GORULE:0000007 IPI used with GO:0003824 catalytic activity or descendents (GO:0004674 protein serine/threonine kinase activity) +UniProtKB A0A078CGE6 M3KE1 enables GO:0004674 PMID:11489177 IPI F GORULE:0000007-1 protein taxon:3708 20150115 GO_Central +! FAILS GORULE:0000008 - TEST 1 - GO:0005622 is in the subset gocheck_do_not_annotate +UniProtKB Q9DGE2 mapk14a is_active_in GO:0005622 PMID:10995439 IDA C GORULE:0000008-1 Mitogen-activated protein kinase 14A mapk14a|mapk14 protein taxon:7955 20180129 GO_Central +! FAILS GORULE:0000008 - TEST 2 - GO:0007049 is in the subset gocheck_do_not_manually_annotate +UniProtKB Q9WVH3 Foxo4 involved_in GO:0007049 PMID:12048180 IDA P GORULE:0000008-2 Forkhead box protein O4 Foxo4|Afx|Afx1 protein taxon:10090 20110425 GO_Central +! FAILS GORULE:0000008 - TEST 3 - also fails GORULE:0000051 - GO:0005488 is in the subset gocheck_do_not_manually_annotate +UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000008-3 Darlin darA protein taxon:44689 20100205 GO_Central +"! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575" +UniProtKB Q4KA26 PFL_3807 is_active_in GO:0016020 GO_REF:0000015 ND C GORULE:0000011-1 Putative membrane protein PFL_3807 protein taxon:220664 20090717 GO_Central +"! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575." +UniProtKB Q4KA26 PFL_3807 is_active_in GO:0005575 GO_REF:0000015 IDA C GORULE:0000011-2 Putative membrane protein PFL_3807 protein taxon:220664 20090717 GO_Central +! SHOULD PASS GORULE:0000011 - TEST 3 +UniProtKB Q6UW15 REG3G involved_in GO:0050689 PMID:16931762 IDA P GORULE:0000011-3 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 GO_Central +! FAILS GORULE:0000013 - fails because GO:0075342 should not be annotated for human gene products - cannot be tested in ontobio parser (not a line-by-line check) +UniProtKB P67870 CSNK2B involved_in GO:0075342 PMID:20719947 IDA P GORULE:0000013-1 Casein kinase II subunit beta CSNK2B|CK2N|G5A protein taxon:9606 20230307 GO_Central +"! FAILS GORULE:0000015 - TEST 1 - GO:0005886 plasma membrane is not a child of ""GO:0018995 host cellular component""" +UniProtKB O56786 hol187 is_active_in GO:0005886 PMID:10419939 IDA C GORULE:0000015-1 Holin protein Hol187 hol187 protein taxon:55511|taxon:9696 20170423 GO_Central +"! FAILS GORULE:0000015 - TEST 2 - ""neutrophil chemotaxis"" is not a child of ""GO:0044419 interspecies interaction between organisms""" +UniProtKB A0A0K2S4Q6 CD300H involved_in GO:0030593 PMID:26221034 IDA P GORULE:0000015-2 Protein CD300H CD300H protein taxon:9606|taxon:55511 20160428 GO_Central +! FAILS GORULE:0000015 - TEST 3 - same taxon in Column 13 for GO:0044158 host cell wall +UniProtKB O56786 hol187 is_active_in GO:0018995 PMID:10419939 IDA C GORULE:0000015-3 Holin protein Hol187 hol187 protein taxon:9606|taxon:9606 20170423 GO_Central +! SHOULD PASS GORULE:0000015 - TEST 4 - GO:0010363 regulation of plant-type hypersensitive response is_ GO:0043903 regulation of biological process involved in symbiotic interaction +UniProtKB Q6UW15 REG3G involved_in O:0010363 PMID:16931762 IDA P GORULE:0000015-4 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 GO_Central +! FAILS GORULE:0000016 - TEST 1 - column 8 (with/from) is null +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC P GORULE:0000016-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000016 - TEST 2 - column 8 (with/from) is has a non-GOID +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC UBERON:0002048 P GORULE:0000016-2 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000016 - TEST 3 - column 8 (with/from) is the same GOID as column 5 +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:0006921 P GORULE:0000016-3 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! SHOULD PASS GORULE:0000016 - TEST 5 - column 8 (with/from) is has a valid GO ID +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:009718 P GORULE:0000016-5 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000017 - TEST 1 - IDA annotations must not have a with/from entry (column 8) +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IDA GO:0004198|GO:0008092 P GORULE:0000017-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000018 - TEST 1 - column 8 (with/from) is null for IPI annotation to 'protein binding ; GO:0005515' +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-1 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +! FAILS GORULE:0000018 - TEST 2 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-2 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +! FAILS GORULE:0000018 - TEST 3 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' +UniProtKB O76187 darA involved_in GO:0005488 PMID:9802899 IPI F GORULE:0000018-3 protein taxon:44689 20230513 GO_Central +! FAILS GORULE:0000020 - TEST 1 - obsolete term with no replacement +UniProtKB P04995 sbcB involved_in GO:0090503 GO_REF:0000108 IEA GO:0000175 P GORULE:0000020-1 Exodeoxyribonuclease I sbcB|cpeA|xonA|JW1993|b2011 protein taxon:83333 20230509 GO_Central +! FAILS GORULE:0000020 - TEST 2 - obsolete term with a replacement term +TriTrypDB Tb11.02.5420b Tb11.02.5420b located_in GO:0016021 GO_REF:0000002 ISO GeneDB:Tb11.02.5420 C "GORULE:0000020-2 NADPH-cytochrome p450 reductase, putative" mRNA taxon:185431 20130726 GO_Central +! FAILS GORULE:0000020 - TEST 3 - obsolete term in 'with' (column 8) with no replacement +MGI:1100518 Smad7 bla involved_in GO:0017015 MGI:MGI:3836072|PMID:18952608 IC GO:0060389 P GORULE:0000020-3 SMAD protein_coding_gene taxon:10090 20090211 GO_Central +! FAILS GORULE:0000020 - TEST 4 - obsolete term in 'extension' (column 16) with no replacement +UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000020-4 Darlin darA protein taxon:44689 20100205 GO_Central involved_in(GO:0090503) +! FAILS GORULE:0000020 - TEST 5 - obsolete term in 'extension' (column 16) with a replacement +UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000020-5 Darlin darA protein taxon:44689 20100205 GO_Central involved_in(GO:0014067) +! FAILS GORULE:0000027 - TEST 1 - bad GO ID syntax +PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-1 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 GO_Central +! FAILS GORULE:0000027 - TEST 2 - bad GO ID syntax; no colon +PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-2 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 GO_Central +! FAILS GORULE:0000027 - TEST 3 - bad GO ID syntax; bad namespace +PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-3 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 GO_Central +! FAILS GORULE:0000027 - TEST 4 - Prefix not in /db-xrefs.yaml +UniPotKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-4 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000027 - TEST 5 - Assigned_by not in /groups.yaml +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-5 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 SGDDB +! FAILS GORULE:0000027 - TEST 6 - Bad reference format +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:PMID:14561399 IDA P GORULE:0000027-6 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000027 - TEST 7 - Bad reference format +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:unpublished IDA P GORULE:0000027-7 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000027 - TEST 8 - Bad reference format +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID: IDA P GORULE:0000027-8 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000027 - TEST 9 - Bad reference format +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:0. IDA P GORULE:0000027-9 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +"! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P" +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE:0000028-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +"! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P" +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA F GORULE:0000028-2 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +"! FAILS GORULE:0000028 - TEST 3 - Bad GO aspect, P instead of F" +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA P GORULE:0000028-3 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +! FAILS GORULE:0000028 - TEST 4 - GO aspect missing +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA GORULE:0000028-4 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +! FAILS GORULE:0000029 - TEST 1 - IEA older than 1 year +UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000029-1 protein taxon:83333 20220807 GO_Central +! FAILS GORULE:0000029 - TEST 2 - IEA older than 3 years +UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000029-2 protein taxon:83333 20200507 GO_Central +! FAILS GORULE:0000030 - TEST 1 - Deprecated GO_REF +UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000045 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000030-1 protein taxon:83333 20230607 GO_Central +! SHOULD PASS GORULE:0000030 - TEST 2 - Valid GO_REF +UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000033 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000030-2 protein taxon:83333 20230607 GO_Central +! FAILS GORULE:0000037 - TEST 1 - IBA with Assigned_by other than GO_Central +UniProtKB A0A024BTL2 PHKG1 is_active_in GO:0005634 PMID:21873635 IBA FB:FBgn0019686|FB:FBgn0028360|FB:FBgn0032677|PANTHER:PTN005196447|PomBase:SPAC14C4.03|PomBase:SPCC1322.08|PomBase:SPCC18B5.11c|RGD:621543|SGD:S000006074|UniProtKB:O96017|UniProtKB:Q5AVW7 C GORULE:0000037-1 protein taxon:9823 20221009 PomBase +! FAILS GORULE:0000037 - TEST 2 - IBA with reference other than PMID:21873635 +UniProtKB A0A024BTL2 PHKG1 is_active_in GO:0005634 PMID:26221034 IBA FB:FBgn0019686|FB:FBgn0028360|FB:FBgn0032677|PANTHER:PTN005196447|PomBase:SPAC14C4.03|PomBase:SPCC1322.08|PomBase:SPCC18B5.11c|RGD:621543|SGD:S000006074|UniProtKB:O96017|UniProtKB:Q5AVW7 C GORULE:0000037-2 protein taxon:9823 20221009 GO_Central +! FAILS GORULE:0000039 - TEST 1 - Protein complex annotated to GO:0032991 protein-containing complex +ComplexPortal CPX-102 dapk-calm_human part_of GO:0032991 PMID:10629061 IMP C GORULE:0000039-1 complex taxon:9606 20200218 GO_Central +! FAILS GORULE:0000039 TEST 2 - Protein complex annotated to an is_a descendant of GO:0032991 protein-containing complex +ComplexPortal CPX-102 dapk-calm_human part_of GO:0043020 PMID:10629061 IMP C GORULE:0000039-2 complex taxon:9606 20200218 GO_Central +"! FAILS GORULE:0000042 - TEST 1 - IKR evidence, no negation (NOT) in column 4" +UniProtKB A0A0B4JCV5 CG9898 enables GO:0004252 PMID:30367934 IKR F GORULE:0000042-1 protein taxon:7227 20190311 GO_Central +"! FAILS GORULE:0000046 - TEST 1 - self-binding’ term, no data in Column 8 " +UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA F GORULE:0000046-1 protein taxon:9606 20170627 GO_Central +"! FAILS GORULE:0000046 - TEST 2 - self-binding’ term, annotated to a protein other than 'self'" +UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA UniProtKB:P35555 F GORULE:0000046-2 protein taxon:9606 20170627 GO_Central +! FAILS GORULE:0000050 - TEST 1 - self-referential ISS annotations +UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISS UniProtKB:F1N2N9 C GORULE:0000050-1 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 GO_Central +! FAILS GORULE:0000050 - TEST 2 - self-referential ISO annotations +UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISO UniProtKB:F1N2N9 C GORULE:0000050-2 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 GO_Central +! FAILS GORULE:0000050 - TEST 3 - self-referential ISA annotations +UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISA UniProtKB:F1N2N9 C GORULE:0000050-3 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 GO_Central +! SHOULD PASS GORULE:0000051 - Pass RULE 51 - Annotation extension for certain GO terms - protein binding; GO:0005515 +UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-PASS1 Darlin darA protein taxon:44689 20100205 GO_Central has_input(GO:0003674)|occurs_in(CL:123456) +! FAILS GORULE:0000051 - TEST 1 - also fails GORULE:0000008 - Annotation extension is required for certain terms - binding GO:0005488 +UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-1 Darlin darA protein taxon:44689 20100205 GO_Central +! FAILS GORULE:0000055 - TEST 1 - Two references in the same ID space - PMID +PlasmoDB PF3D7_0200400 PF3D7_0200400 is_active_in GO:0020036 PMID:12477793|PMID:15961998 IDA C GORULE:0000055-1 stevor mRNA taxon:4896 20131007 GO_Central +! FAILS GORULE:0000055 - TEST 2 - Two references in the same ID space - GO_REF +PlasmoDB PF3D7_0200400 PF3D7_0200400 is_active_in GO:0020036 GO_REF:0000044|GO_REF:0000001 IDA C GORULE:0000055-2 stevor mRNA taxon:4896 20131007 GO_Central +! FAILS GORULE:0000059 - TEST 1 - GP2term relation missing +SGN 235 cpk1 GO:0005886 PMID:12011347 IDA C GORULE:0000059-1 calcium-dependent protein kinase LeCPK1|Solyc03g031670 gene taxon:4081 20080616 GO_Central +! FAILS GORULE:0000061 - TEST 1 SHOULD NOT FAIL (wrong on snapshot??) the part_of GP2term relation is not allowed for GO:0070865 +FB FBgn0011273 Acam part_of GO:0070865 FB:FBrf0193169|PMID:16790438 IDA C GORULE:0000061-1 Androcam ACaM|And|CG17769|CalB|Calmodulin-related 97A|Camr97A|androcalmodulin|androcam protein taxon:7227 20180501 GO_Central +! FAILS GORULE:0000061 - TEST 3 - SHOULD NOT FAIL the 'part_of' GP2term relation is allowed for GO:0070864 (CC complex) +FB FBgn0011273 shi part_of GO:0070864 PMID:12432073 IDA C GORULE:0000061-3 Dynamin Protein shibire|dDyn protein taxon:7227 20180501 GO_Central +! FAILS GORULE:0000061 - TEST 4 - the 'part_of' GP2term relation is not allowed for GO:0140827 (MF) +UniProtKB A1B2F4 aztD part_of GO:0140827 PMID:26468286 IDA F GORULE:0000061-4 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - TEST 5 - the 'enables' GP2term relation is not allowed for GO:0005856 (CC) +UniProtKB A1B2F4 aztD enables GO:0005856 PMID:26468286 IDA C GORULE:0000061-5 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - TEST 6 - also fails GORULE-0000011 - the 'located in' GP2term relation is not allowed for GO:0005575 (root CC) - Fails GORULE 11 +UniProtKB A1B2F4 aztD located_in GO:0005575 PMID:26468286 IDA F GORULE:0000061-6 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - TEST 7 - also fails GORULE-0000011 - the 'contributes_to' GP2term relation is not allowed for GO:0003674 (root MF) - Fails GORULE 11 +UniProtKB A1B2F4 aztD contributes_to GO:0003674 PMID:26468286 IDA F GORULE:0000061-7 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - TEST 8 - also fails GORULE-0000011 - the 'acts upstream of or within' GP2term relation is not allowed for GO:0008150 (root BP) - Fails GORULE 11 +UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0008150 PMID:26468286 IDA F GORULE:0000061-8 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 9- 'enables' is not allowed for a GO BP +UniProtKB A1B2F4 aztD enables GO:0043491 PMID:26468286 IDA P GORULE:0000061-9 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 10 - 'contributes_to' is not allowed for a GO BP +UniProtKB A1B2F4 aztD contributes_to GO:0043491 PMID:26468286 IDA P GORULE:0000061-10 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 11 'enables' is not allowed for a GO CC +UniProtKB A1B2F4 aztD enables GO:0005634 PMID:26468286 IDA C GORULE:0000061-11 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 12 - 'contributes_to' is not allowed for a GO CC +UniProtKB A1B2F4 aztD contributes_to GO:0005634 PMID:26468286 IDA C GORULE:0000061-12 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 13 - 'involved_in' is not allowed for a GO MF +UniProtKB A1B2F4 aztD involved_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-13 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 14- 'acts_upstream_of_or_within' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0004672 PMID:26468286 IDA F GORULE:0000061-14 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 15- 'acts_upstream_of_or_within_positive_effect' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of_or_within_positive_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-15 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 16 - 'acts_upstream_of_or_within_negative_effect' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of_or_within_negative_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-16 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 17 - 'acts_upstream_of' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of GO:0004672 PMID:26468286 IDA F GORULE:0000061-17 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 18 - acts_upstream_of_positive_effect' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of_positive_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-18 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 19- 'acts_upstream_of_negative_effect' is not allowed for a GO MF +UniProtKB A1B2F4 aztD acts_upstream_of_negative_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-19 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 20 - 'involved_in' is not allowed for a GO CC +UniProtKB A1B2F4 aztD involved_in GO:0005634 PMID:26468286 IDA C GORULE:0000061-20 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 21- 'acts_upstream_of_or_within' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of_or_within GO:0005634 PMID:26468286 IDA C GORULE:0000061-21 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 22 - 'acts_upstream_of_or_within_positive_effect' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of_or_within_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-22 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 23 - 'acts_upstream_of_or_within_negative_effect' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of_or_within_negative_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-23 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 24 - 'acts_upstream_of' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-24 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 25 - 'acts_upstream_of_positive_effect' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-25 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 26 - 'acts_upstream_of_negative_effect' is not allowed for a GO CC +UniProtKB A1B2F4 aztD acts_upstream_of_negative_effect GO:0005634 PMID:26468286 IDA C GORULE:0000061-26 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 27 - 'is_active_in' is not allowed for a GO MF +UniProtKB A1B2F4 aztD is_active_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-27 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 28 - 'part_of' is not allowed for a GO MF +UniProtKB A1B2F4 aztD part_of GO:0004672 PMID:26468286 IDA F GORULE:0000061-28 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 29 - 'located_in' is not allowed for a GO MF +UniProtKB A1B2F4 aztD located_in GO:0004672 PMID:26468286 IDA F GORULE:0000061-29 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 30 - 'colocalizes_with' is not allowed for a GO MF +UniProtKB A1B2F4 aztD colocalizes_with GO:0004672 PMID:26468286 IDA F GORULE:0000061-30 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 31 - 'is_active_in' is not allowed for a GO BP +UniProtKB A1B2F4 aztD is_active_in GO:0043491 PMID:26468286 IDA P GORULE:0000061-31 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 32 - 'part_of' is not allowed for a GO BP +UniProtKB A1B2F4 aztD part_of GO:0043491 PMID:26468286 IDA P GORULE:0000061-32 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 33 - 'located_in' is not allowed for a GO BP +UniProtKB A1B2F4 aztD located_in GO:0043491 PMID:26468286 IDA P GORULE:0000061-33 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 34 - 'colocalizes_with' is not allowed for a GO BP +UniProtKB A1B2F4 aztD colocalizes_with GO:0043491 PMID:26468286 IDA P GORULE:0000061-34 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 35 - 'is_active_in' is not allowed for a GO CC - complex +UniProtKB A1B2F4 aztD is_active_in GO:0000124 PMID:26468286 IDA C GORULE:0000061-35 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 36 - 'located_in' is not allowed for a GO CC - complex +UniProtKB A1B2F4 aztD located_in GO:0042101 PMID:26468286 IDA C GORULE:0000061-36 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 37 - 'colocalizes_with' is not allowed for a GO CC - complex +UniProtKB A1B2F4 aztD colocalizes_with GO:0042101 PMID:26468286 IDA C GORULE:0000061-37 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 38 - 'part_of' is not allowed for a GO CC - cellular anatomical entity +UniProtKB A1B2F4 aztD part_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-38 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 39 - 'part_of' is not allowed for GO CC - cellular anatomical entity +UniProtKB A1B2F4 aztD NOT|part_of GO:0005634 PMID:26468286 IDA C GORULE:0000061-39 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 40 - Fail unknown GO id type +FB FBgn0011273 shi NOT|part_of GO:1234567 PMID:12432073 IDA C GORULE:0000061-40 Dynamin Protein shibire|dDyn protein taxon:7227 20180501 GO_Central +! FAILS GORULE:0000061 - test 41 - 'part_of' is not allowed for GO CC - cell plate descendent of cellular anatomical entity +UniProtKB A1B2F4 aztD part_of GO:0009504 PMID:26468286 IDA C GORULE:0000061-41 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 42 - 'part_of' is not allowed for GO CC cellular anatomical entity +UniProtKB A1B2F4 aztD part_of GO:0110165 PMID:26468286 IDA C GORULE:0000061-42 protein taxon:318586 20230427 GO_Central +! FAILS GORULE:0000061 - test 43 - 'part_of' is not allowed for GO CC virion component +UniProtKB A1B2F4 aztD part_of GO:0044423 PMID:26468286 IDA C GORULE:0000061-43 protein taxon:318586 20230427 GO_Central +"! FAILS GORULE:0000061 - test 44 - 'part_of' is not allowed for a GO CC icosahedral viral capsid, neck descendant of virion component " +UniProtKB A1B2F4 aztD part_of GO:0098030 PMID:26468286 IDA C GORULE:0000061-44 protein taxon:318586 20230427 GO_Central +! SHOULD PASS GORULE:0000061 - test 45- 'enables' is allowed for a GO MF +UniProtKB A1B2F4 aztD enables GO:0003909 PMID:26468286 IDA P GORULE:0000061-9 protein taxon:318586 20230427 GO_Central +! SHOULD PASS GORULE:0000061 - test 46 - 'is_active_in' is allowed for GO CC - cell plate descendent of cellular anatomical entity +UniProtKB A1B2F4 aztD is_active_in GO:0009504 PMID:26468286 IDA C GORULE:0000061-41 protein taxon:318586 20230427 GO_Central