From 4abf3f3ace8bec0b001b52339cb9c6f6dfa4d64a Mon Sep 17 00:00:00 2001 From: pgaudet Date: Wed, 27 Mar 2024 17:34:00 +0100 Subject: [PATCH 1/2] Update gorule-0000064.md --- metadata/rules/gorule-0000064.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/metadata/rules/gorule-0000064.md b/metadata/rules/gorule-0000064.md index 6be1abf1..0e205af2 100644 --- a/metadata/rules/gorule-0000064.md +++ b/metadata/rules/gorule-0000064.md @@ -8,5 +8,5 @@ status: approved contact: "go-quality@lists.stanford.edu" --- -If an annotation is an IEA to GO_REF:0000118 and the taxon is not in the GO reference species list -(i.e 143 Panther species), then filter out. +If an annotation has GO_REF:0000118 (GAF column 6, GPAD column 5) and the taxon (GAF column 13, GPI column 7) is present in the GO reference species list +(i.e 143 Panther species; https://www.pantherdb.org/panther/summaryStats.jsp), then the annotation should be filter out. From 77d659f232a3aa384b49c674d79b56a22ffa681c Mon Sep 17 00:00:00 2001 From: pgaudet Date: Wed, 27 Mar 2024 16:34:17 +0000 Subject: [PATCH 2/2] refreshing goref and rules README.md files --- metadata/rules/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/metadata/rules/README.md b/metadata/rules/README.md index 142c027b..43509be4 100644 --- a/metadata/rules/README.md +++ b/metadata/rules/README.md @@ -1079,5 +1079,5 @@ See also GO-RULE:0000038 (proposed) for a check of the values in the 'with' fiel -If an annotation is an IEA to GO_REF:0000118 and the taxon is not in the GO reference species list -(i.e 143 Panther species), then filter out. +If an annotation has GO_REF:0000118 (GAF column 6, GPAD column 5) and the taxon (GAF column 13, GPI column 7) is present in the GO reference species list +(i.e 143 Panther species; https://www.pantherdb.org/panther/summaryStats.jsp), then the annotation should be filter out.