From 8d7dff4acc68ec3d5233257c096051460b3ad403 Mon Sep 17 00:00:00 2001 From: pgaudet Date: Fri, 30 Aug 2024 17:10:46 +0200 Subject: [PATCH] Update gorules_test_errors.gaf --- docs/gorules_test_errors.gaf | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf index 230b3ab4..d4ee6525 100644 --- a/docs/gorules_test_errors.gaf +++ b/docs/gorules_test_errors.gaf @@ -22,7 +22,7 @@ PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S0000015 ! FAILS GORULE:0000001 - TEST 5 - Bad evidence code PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 MADEUP SGD:S000001583 C GORULE_TEST:0000001-5 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:1) ! FAILS GORULE:0000001 - TEST 6 - Bad date, but fixable -PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE_TEST:0000001-6 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 3/5/15 PomBase part_of(X:1) +PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE_TEST:0000001-6 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 3/5/15 PomBase ! FAILS GORULE:0000001 - TEST 7 - Bad date, unparsable PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE_TEST:0000001-7 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 TODAY PomBase part_of(X:1) ! FAILS GORULE:0000001 - TEST 8 - invalid taxon 0 @@ -187,6 +187,8 @@ FB FBgn0024811 Crk involved_in GO:0048010 FB:FBrf0180198|PMID:1545721X IMP P GO UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IDA P GORULE_TEST:0000027-18 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 LBL ! FAILS GORULE:0000027 - TEST 19 - 'Assigned by' is in dbxref.yaml but not in groups.yaml UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IDA P GORULE_TEST:0000027-18 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 PO +! FAILS GORULE:0000027 - TEST 20 - Bad value in extension 'X' +PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE_TEST:0000027-20 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20180912 PomBase part_of(X:1) ! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE_TEST:0000028-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P